Wall clock time and date at job start Wed Apr 1 2020 03:24:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.35311 * 126.66196 * 2 1 4 4 C 1.42272 * 103.92432 * 180.12923 * 3 2 1 5 5 C 1.48327 * 126.94200 * 179.90587 * 4 3 2 6 6 O 1.21491 * 120.00401 * 359.71373 * 5 4 3 7 7 N 1.34780 * 120.00037 * 179.71118 * 5 4 3 8 8 C 1.46491 * 120.00145 * 180.02562 * 7 5 4 9 9 C 1.54415 * 129.01464 * 179.97438 * 8 7 5 10 10 C 1.54417 * 78.89586 * 179.35585 * 9 8 7 11 11 C 1.50701 * 129.01699 * 180.65057 * 10 9 8 12 12 O 1.21285 * 119.99865 * 359.97438 * 11 10 9 13 13 N 1.34771 * 119.99961 * 180.02562 * 11 10 9 14 14 C 1.47068 * 136.06142 * 359.62066 * 13 11 10 15 15 C 1.53756 * 87.88872 * 152.96904 * 14 13 11 16 16 C 1.50695 * 114.08534 * 139.78290 * 15 14 13 17 17 H 1.08008 * 119.99827 * 266.55494 * 16 15 14 18 18 C 1.37876 * 120.00197 * 86.56260 * 16 15 14 19 19 N 1.31513 * 119.99889 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 120.00001 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47223 * 89.99934 * 20 18 16 22 22 H 1.48501 * 109.47093 * 209.99399 * 20 18 16 23 23 H 1.48497 * 109.47400 * 330.00029 * 20 18 16 24 24 C 1.47069 * 136.05341 * 179.97438 * 13 11 10 25 25 C 1.54894 * 84.49242 * 318.13560 * 10 9 8 26 26 C 1.54886 * 84.49253 * 41.86436 * 10 9 8 27 27 N 1.30989 * 106.11745 * 359.64928 * 4 3 2 28 28 O 1.20909 * 111.44184 * 0.22389 * 27 4 3 29 29 H 1.09007 * 109.46903 * 180.28898 * 1 2 3 30 30 H 1.08995 * 109.47334 * 300.28265 * 1 2 3 31 31 H 1.08998 * 109.47493 * 60.29229 * 1 2 3 32 32 H 1.08002 * 128.04121 * 0.02562 * 3 2 1 33 33 H 0.97001 * 120.00042 * 359.97438 * 7 5 4 34 34 H 1.09005 * 114.93375 * 66.86683 * 9 8 7 35 35 H 1.08999 * 114.98952 * 291.84284 * 9 8 7 36 36 H 1.08995 * 113.46594 * 267.70041 * 14 13 11 37 37 H 1.09004 * 113.46428 * 38.13679 * 14 13 11 38 38 H 1.09003 * 114.39397 * 272.67752 * 15 14 13 39 39 H 0.97006 * 119.99716 * 179.97438 * 19 18 16 40 40 H 1.08993 * 113.46987 * 321.85804 * 24 13 11 41 41 H 1.09007 * 113.46850 * 92.30264 * 24 13 11 42 42 H 1.09001 * 114.97827 * 154.16911 * 25 10 9 43 43 H 1.08997 * 114.97911 * 289.34528 * 25 10 9 44 44 H 1.09001 * 114.97663 * 70.66214 * 26 10 9 45 45 H 1.09004 * 114.97829 * 205.82989 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3150 1.0854 0.0000 4 6 3.6271 0.5355 -0.0031 5 6 4.9075 1.2843 -0.0064 6 8 4.9008 2.4992 -0.0118 7 7 6.0785 0.6170 -0.0032 8 6 7.3430 1.3565 -0.0059 9 6 8.7878 0.8116 -0.0026 10 6 9.0443 2.3341 -0.0264 11 6 10.3564 3.0749 -0.0553 12 8 11.4008 2.4583 -0.0620 13 7 10.3692 4.4224 -0.0727 14 6 9.3588 5.4911 -0.0781 15 6 10.3980 6.3990 0.6001 16 6 10.4044 7.8160 0.0874 17 1 11.0779 8.0995 -0.7080 18 6 9.5508 8.7507 0.6338 19 7 8.7305 8.4055 1.6021 20 14 9.5593 10.5075 -0.0012 21 1 8.5865 10.6356 -1.1159 22 1 9.1789 11.4325 1.0965 23 1 10.9192 10.8509 -0.4892 24 6 11.3997 5.4712 -0.1009 25 6 7.8838 2.3628 -1.0519 26 6 7.8909 2.3937 1.0057 27 7 3.4761 -0.7656 0.0031 28 8 2.3073 -1.0749 0.0049 29 1 -0.3633 -1.0277 0.0052 30 1 -0.3634 0.5182 0.8874 31 1 -0.3634 0.5093 -0.8926 32 1 2.0300 2.1272 0.0004 33 1 6.0839 -0.3530 0.0015 34 1 9.0812 0.2820 -0.9091 35 1 9.0884 0.3093 0.9168 36 1 9.0816 5.8212 -1.0792 37 1 8.4943 5.2742 0.5493 38 1 10.4128 6.3318 1.6880 39 1 8.1301 9.0633 1.9867 40 1 12.2736 5.2376 0.5071 41 1 11.6609 5.7962 -1.1081 42 1 7.3409 3.3064 -1.1064 43 1 8.1191 1.9327 -2.0254 44 1 8.1330 1.9932 1.9901 45 1 7.3483 3.3386 1.0354 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001270026003.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:24:36 Heat of formation + Delta-G solvation = 112.872744 kcal Electronic energy + Delta-G solvation = -29299.028725 eV Core-core repulsion = 25096.554858 eV Total energy + Delta-G solvation = -4202.473867 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -46.20684 -43.47647 -40.91505 -40.34454 -38.61476 -35.46507 -35.09330 -34.66476 -34.09529 -31.19906 -28.72760 -27.83828 -27.10197 -26.92511 -26.77274 -26.61206 -24.95575 -23.83982 -22.24954 -21.35398 -20.47137 -19.32854 -18.96386 -18.77866 -18.64267 -18.06837 -17.93363 -17.36359 -16.65342 -16.26020 -16.15242 -16.11821 -15.54686 -15.41180 -15.22242 -14.97079 -14.83609 -14.48164 -14.20956 -13.96718 -13.73862 -13.36242 -13.31747 -13.29122 -13.05180 -12.82930 -12.78536 -12.55113 -12.46502 -12.33404 -12.21725 -11.85749 -11.65721 -11.64385 -11.50750 -11.33945 -11.08186 -10.84587 -10.54953 -10.44044 -10.38391 -9.64545 -8.17747 -6.29354 -0.08180 0.60379 1.31884 1.33478 1.46591 1.48266 1.58113 1.84364 1.88223 2.00104 2.44988 2.66609 2.97592 3.11698 3.12699 3.17108 3.20375 3.32789 3.38187 3.56153 3.88467 4.07428 4.21020 4.29665 4.34164 4.35291 4.43054 4.48725 4.55712 4.65925 4.67956 4.68242 4.71859 4.77889 4.79802 4.80372 4.82329 4.84608 4.96508 5.02284 5.22635 5.25084 5.56755 5.79414 6.07817 6.20750 6.74701 6.77483 6.79831 6.93294 7.06923 7.40858 8.92293 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.011717 B = 0.002446 C = 0.002066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2389.045659 B =11444.997904 C =13551.144955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.007 4.007 3 C -0.205 4.205 4 C -0.043 4.043 5 C 0.600 3.400 6 O -0.540 6.540 7 N -0.649 5.649 8 C 0.108 3.892 9 C -0.057 4.057 10 C -0.163 4.163 11 C 0.596 3.404 12 O -0.583 6.583 13 N -0.637 5.637 14 C 0.116 3.884 15 C 0.024 3.976 16 C -0.527 4.527 17 H 0.070 0.930 18 C 0.019 3.981 19 N -0.919 5.919 20 Si 0.960 3.040 21 H -0.274 1.274 22 H -0.287 1.287 23 H -0.264 1.264 24 C 0.108 3.892 25 C -0.098 4.098 26 C -0.101 4.101 27 N -0.343 5.343 28 O 0.128 5.872 29 H 0.103 0.897 30 H 0.110 0.890 31 H 0.110 0.890 32 H 0.188 0.812 33 H 0.426 0.574 34 H 0.104 0.896 35 H 0.100 0.900 36 H 0.079 0.921 37 H 0.051 0.949 38 H 0.040 0.960 39 H 0.264 0.736 40 H 0.063 0.937 41 H 0.089 0.911 42 H 0.069 0.931 43 H 0.095 0.905 44 H 0.088 0.912 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.030 -19.773 -4.056 27.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.070 4.070 3 C -0.228 4.228 4 C -0.201 4.201 5 C 0.385 3.615 6 O -0.415 6.415 7 N -0.300 5.300 8 C 0.019 3.981 9 C -0.096 4.096 10 C -0.167 4.167 11 C 0.386 3.614 12 O -0.465 6.465 13 N -0.369 5.369 14 C -0.007 4.007 15 C 0.005 3.995 16 C -0.565 4.565 17 H 0.088 0.912 18 C -0.181 4.181 19 N -0.557 5.557 20 Si 0.785 3.215 21 H -0.200 1.200 22 H -0.213 1.213 23 H -0.188 1.188 24 C -0.014 4.014 25 C -0.137 4.137 26 C -0.140 4.140 27 N -0.043 5.043 28 O 0.050 5.950 29 H 0.122 0.878 30 H 0.128 0.872 31 H 0.129 0.871 32 H 0.206 0.794 33 H 0.266 0.734 34 H 0.123 0.877 35 H 0.119 0.881 36 H 0.097 0.903 37 H 0.069 0.931 38 H 0.058 0.942 39 H 0.073 0.927 40 H 0.081 0.919 41 H 0.107 0.893 42 H 0.087 0.913 43 H 0.113 0.887 44 H 0.107 0.893 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -16.725 -20.390 -3.937 26.664 hybrid contribution -0.218 1.591 -0.008 1.606 sum -16.943 -18.800 -3.945 25.613 Atomic orbital electron populations 1.20695 0.79765 1.06663 1.06063 1.25214 0.98041 0.83750 1.00024 1.22677 0.89053 1.02892 1.08156 1.23260 0.96309 0.90768 1.09713 1.17184 0.82126 0.86190 0.76000 1.90859 1.86961 1.13979 1.49686 1.44278 1.01781 1.10463 1.73463 1.22534 0.84305 0.94045 0.97213 1.23892 0.88657 0.92060 1.04947 1.23089 0.92034 0.99606 1.01943 1.18270 0.88077 0.79718 0.75381 1.90626 1.34531 1.67390 1.53938 1.49890 1.13930 1.03114 1.69952 1.23410 0.93469 0.83348 1.00448 1.20275 0.91260 0.92783 0.95218 1.21206 1.21455 0.93938 1.19886 0.91212 1.25810 0.94811 1.02896 0.94624 1.70076 1.23293 1.36143 1.26218 0.85523 0.78826 0.79283 0.77849 1.20007 1.21260 1.18797 1.23281 0.92972 0.83935 1.01198 1.24454 0.92445 0.99452 0.97373 1.24454 0.92831 0.99226 0.97511 1.74151 0.98479 1.14908 1.16805 1.84749 1.10765 1.34115 1.65334 0.87811 0.87183 0.87119 0.79436 0.73438 0.87728 0.88132 0.90308 0.93053 0.94206 0.92692 0.91889 0.89296 0.91265 0.88678 0.89307 0.91540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.11 10.45 71.24 0.74 0.63 16 2 C -0.01 -0.08 7.47 25.01 0.19 0.10 16 3 C -0.20 -3.51 10.92 22.60 0.25 -3.26 16 4 C -0.04 -0.95 7.19 42.96 0.31 -0.64 16 5 C 0.60 16.19 7.85 86.93 0.68 16.87 16 6 O -0.54 -18.68 16.83 -3.69 -0.06 -18.74 16 7 N -0.65 -14.82 5.71 -477.14 -2.72 -17.55 16 8 C 0.11 2.78 3.87 -7.14 -0.03 2.75 16 9 C -0.06 -1.37 7.80 30.61 0.24 -1.14 16 10 C -0.16 -5.26 3.26 -63.67 -0.21 -5.46 16 11 C 0.60 24.11 8.19 87.66 0.72 24.83 16 12 O -0.58 -26.33 17.87 -3.05 -0.05 -26.38 16 13 N -0.64 -26.91 3.69 -857.77 -3.16 -30.08 16 14 C 0.12 5.15 7.99 83.27 0.67 5.81 16 15 C 0.02 1.16 3.80 -11.13 -0.04 1.12 16 16 C -0.53 -27.17 8.82 25.60 0.23 -26.95 16 17 H 0.07 3.44 7.81 -2.91 -0.02 3.42 16 18 C 0.02 1.00 5.46 84.65 0.46 1.46 16 19 N -0.92 -51.81 13.26 21.45 0.28 -51.53 16 20 Si 0.96 41.61 29.54 68.60 2.03 43.64 16 21 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 22 H -0.29 -12.40 7.11 99.48 0.71 -11.69 16 23 H -0.26 -10.98 7.11 99.48 0.71 -10.27 16 24 C 0.11 4.58 8.17 83.17 0.68 5.26 16 25 C -0.10 -2.88 7.75 29.66 0.23 -2.65 16 26 C -0.10 -3.14 7.74 29.65 0.23 -2.91 16 27 N -0.34 -6.73 11.84 -49.50 -0.59 -7.31 16 28 O 0.13 1.95 11.18 71.93 0.80 2.75 16 29 H 0.10 -0.14 8.14 -2.38 -0.02 -0.16 16 30 H 0.11 -0.07 8.14 -2.39 -0.02 -0.09 16 31 H 0.11 -0.09 8.14 -2.39 -0.02 -0.11 16 32 H 0.19 2.88 8.06 -2.91 -0.02 2.86 16 33 H 0.43 7.41 8.59 -92.71 -0.80 6.62 16 34 H 0.10 2.13 7.97 -2.38 -0.02 2.12 16 35 H 0.10 2.14 7.97 -2.39 -0.02 2.12 16 36 H 0.08 3.42 8.10 -2.39 -0.02 3.40 16 37 H 0.05 2.36 7.77 -2.38 -0.02 2.34 16 38 H 0.04 2.16 8.11 -2.39 -0.02 2.14 16 39 H 0.26 14.20 8.31 -92.70 -0.77 13.42 16 40 H 0.06 2.60 8.14 -2.39 -0.02 2.58 16 41 H 0.09 3.52 8.10 -2.38 -0.02 3.50 16 42 H 0.07 2.34 7.84 -2.39 -0.02 2.32 16 43 H 0.09 2.42 7.97 -2.39 -0.02 2.41 16 44 H 0.09 2.53 7.97 -2.39 -0.02 2.51 16 45 H 0.07 2.41 7.47 -2.38 -0.02 2.39 16 Total: -1.00 -70.57 392.55 2.11 -68.46 By element: Atomic # 1 Polarization: 20.66 SS G_CDS: 0.24 Total: 20.90 kcal Atomic # 6 Polarization: 10.50 SS G_CDS: 5.34 Total: 15.84 kcal Atomic # 7 Polarization: -100.28 SS G_CDS: -6.19 Total: -106.47 kcal Atomic # 8 Polarization: -43.05 SS G_CDS: 0.69 Total: -42.37 kcal Atomic # 14 Polarization: 41.61 SS G_CDS: 2.03 Total: 43.64 kcal Total: -70.57 2.11 -68.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270026003.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 181.334 kcal (2) G-P(sol) polarization free energy of solvation -70.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.461 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds