Wall clock time and date at job start Wed Apr 1 2020 03:24:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35313 * 126.66215 * 2 1 4 4 C 1.42277 * 103.91896 * 180.02562 * 3 2 1 5 5 C 1.48333 * 126.93691 * 180.02562 * 4 3 2 6 6 O 1.21490 * 119.99943 * 359.97438 * 5 4 3 7 7 N 1.34779 * 119.99656 * 179.97438 * 5 4 3 8 8 C 1.47722 * 134.38974 * 180.02562 * 7 5 4 9 9 C 1.53292 * 85.85773 * 155.92142 * 8 7 5 10 10 C 1.52324 * 128.81568 * 243.37865 * 9 8 7 11 11 C 1.52317 * 128.82150 * 163.01068 * 9 8 7 12 12 H 1.08997 * 117.52077 * 225.37918 * 11 9 8 13 13 C 1.50699 * 117.51816 * 10.45838 * 11 9 8 14 14 O 1.21280 * 120.00081 * 359.97438 * 13 11 9 15 15 N 1.34781 * 120.00312 * 179.97438 * 13 11 9 16 16 C 1.47580 * 134.49134 * 179.97438 * 15 13 11 17 17 C 1.53952 * 86.11500 * 155.36347 * 16 15 13 18 18 C 1.50695 * 113.74060 * 137.95290 * 17 16 15 19 19 H 1.07995 * 120.00496 * 0.02562 * 18 17 16 20 20 C 1.37880 * 119.99572 * 180.02562 * 18 17 16 21 21 N 1.31511 * 120.00327 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 119.99951 * 180.02562 * 20 18 17 23 23 H 1.48506 * 109.47297 * 59.99744 * 22 20 18 24 24 H 1.48503 * 109.47261 * 299.99924 * 22 20 18 25 25 H 1.48500 * 109.47454 * 179.97438 * 22 20 18 26 26 C 1.47578 * 134.49101 * 0.02562 * 15 13 11 27 27 C 1.47721 * 134.39638 * 0.02562 * 7 5 4 28 28 N 1.30981 * 106.12141 * 0.25757 * 4 3 2 29 29 O 1.20900 * 111.44424 * 359.54330 * 28 4 3 30 30 H 1.09002 * 109.47457 * 90.00131 * 1 2 3 31 31 H 1.09007 * 109.47246 * 210.00089 * 1 2 3 32 32 H 1.08997 * 109.47565 * 329.99703 * 1 2 3 33 33 H 1.07997 * 128.04039 * 0.04048 * 3 2 1 34 34 H 1.09002 * 113.81654 * 41.68561 * 8 7 5 35 35 H 1.09006 * 113.80890 * 270.15448 * 8 7 5 36 36 H 1.09004 * 117.51618 * 134.66478 * 10 9 8 37 37 H 1.09007 * 117.51668 * 349.53592 * 10 9 8 38 38 H 1.08998 * 113.77108 * 41.06531 * 16 15 13 39 39 H 1.08991 * 113.87349 * 269.67144 * 16 15 13 40 40 H 1.08997 * 113.74240 * 269.15892 * 17 16 15 41 41 H 0.97006 * 119.99995 * 359.97438 * 21 20 18 42 42 H 1.08997 * 113.77175 * 90.33932 * 26 15 13 43 43 H 1.09004 * 113.76848 * 318.93948 * 26 15 13 44 44 H 1.09000 * 113.81035 * 89.84275 * 27 7 5 45 45 H 1.09000 * 113.81093 * 318.31477 * 27 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3149 1.0854 0.0000 4 6 3.6271 0.5354 -0.0006 5 6 4.9075 1.2842 -0.0003 6 8 4.9007 2.4991 0.0000 7 7 6.0784 0.6168 -0.0005 8 6 7.4990 1.0221 0.0002 9 6 7.7754 -0.3510 0.6231 10 6 8.3482 -0.6788 1.9959 11 6 9.0955 -1.1035 0.7283 12 1 9.0930 -2.1630 0.4726 13 6 10.3545 -0.3531 0.3780 14 8 10.2919 0.8063 0.0276 15 7 11.5503 -0.9704 0.4542 16 6 12.9441 -0.5604 0.1952 17 6 13.3446 -1.6791 1.1742 18 6 14.5357 -2.4837 0.7216 19 1 15.0222 -2.2490 -0.2135 20 6 15.0044 -3.5196 1.5016 21 7 14.4117 -3.8058 2.6402 22 14 16.4813 -4.5166 0.9411 23 1 17.6558 -3.6201 0.7916 24 1 16.1791 -5.1582 -0.3636 25 1 16.7835 -5.5635 1.9499 26 6 11.9914 -2.3279 0.8291 27 6 6.4536 -0.8120 -0.0014 28 7 3.4760 -0.7657 -0.0066 29 8 2.3073 -1.0750 -0.0006 30 1 -0.3634 0.0000 -1.0277 31 1 -0.3634 -0.8900 0.5139 32 1 -0.3634 0.8899 0.5138 33 1 2.0300 2.1272 0.0006 34 1 7.7177 1.8586 0.6640 35 1 7.9216 1.1462 -0.9969 36 1 7.8540 -1.4593 2.5745 37 1 8.7674 0.1433 2.5761 38 1 13.1810 0.4417 0.5526 39 1 13.2722 -0.7352 -0.8294 40 1 13.4237 -1.3485 2.2097 41 1 13.6449 -3.2878 2.9315 42 1 12.0383 -3.0220 -0.0100 43 1 11.4673 -2.7373 1.6927 44 1 6.5630 -1.2376 -0.9989 45 1 5.8449 -1.4272 0.6612 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001270026111.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:24:04 Heat of formation + Delta-G solvation = 95.157512 kcal Electronic energy + Delta-G solvation = -28895.358818 eV Core-core repulsion = 24692.116761 eV Total energy + Delta-G solvation = -4203.242057 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -45.46508 -40.86129 -39.51242 -38.41911 -37.01604 -34.65083 -34.52687 -33.69956 -32.91201 -29.37299 -28.49901 -28.23882 -26.61634 -25.50686 -25.04527 -24.31764 -23.22845 -22.93349 -20.74327 -19.72393 -18.90346 -18.25331 -18.15275 -17.76502 -17.31280 -17.07537 -16.60498 -16.04623 -15.96633 -15.31912 -14.97821 -14.46452 -14.33126 -14.12131 -14.07105 -13.85947 -13.78433 -13.65907 -13.29096 -13.21960 -12.93743 -12.59531 -12.24412 -11.94427 -11.86482 -11.73309 -11.54504 -11.08483 -10.98759 -10.94223 -10.84618 -10.72757 -10.58010 -10.20499 -10.08766 -9.86000 -9.71786 -9.48661 -8.99290 -8.67058 -8.57559 -8.03225 -6.55142 -4.28798 0.74865 1.26486 2.26265 2.55362 2.74707 2.89897 3.26048 3.36071 3.37643 3.47440 3.55853 3.69224 3.95161 4.03486 4.33826 4.40693 4.48528 4.64587 4.68487 4.71499 4.84937 4.98895 5.05411 5.07446 5.14188 5.19075 5.21448 5.28067 5.43294 5.47697 5.54845 5.58500 5.66929 5.77541 5.82137 5.85606 5.98881 6.10962 6.20525 6.35697 6.40294 6.56950 7.23814 7.30359 7.53119 7.79940 7.94004 8.23417 8.31405 8.56738 8.67505 9.44084 10.84198 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.027155 B = 0.001812 C = 0.001735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.886977 B =15447.613651 C =16136.029953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.034 4.034 3 C -0.186 4.186 4 C -0.018 4.018 5 C 0.620 3.380 6 O -0.524 6.524 7 N -0.631 5.631 8 C 0.170 3.830 9 C -0.155 4.155 10 C -0.111 4.111 11 C -0.151 4.151 12 H 0.127 0.873 13 C 0.553 3.447 14 O -0.560 6.560 15 N -0.634 5.634 16 C 0.112 3.888 17 C 0.013 3.987 18 C -0.597 4.597 19 H 0.056 0.944 20 C 0.025 3.975 21 N -0.902 5.902 22 Si 1.069 2.931 23 H -0.286 1.286 24 H -0.287 1.287 25 H -0.282 1.282 26 C 0.096 3.904 27 C 0.149 3.851 28 N -0.329 5.329 29 O 0.120 5.880 30 H 0.090 0.910 31 H 0.086 0.914 32 H 0.094 0.906 33 H 0.181 0.819 34 H 0.089 0.911 35 H 0.100 0.900 36 H 0.110 0.890 37 H 0.106 0.894 38 H 0.062 0.938 39 H 0.076 0.924 40 H 0.055 0.945 41 H 0.270 0.730 42 H 0.079 0.921 43 H 0.061 0.939 44 H 0.095 0.905 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.131 3.306 -3.856 26.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.096 4.096 3 C -0.208 4.208 4 C -0.177 4.177 5 C 0.407 3.593 6 O -0.399 6.399 7 N -0.366 5.366 8 C 0.049 3.951 9 C -0.156 4.156 10 C -0.148 4.148 11 C -0.173 4.173 12 H 0.145 0.855 13 C 0.342 3.658 14 O -0.441 6.441 15 N -0.367 5.367 16 C -0.009 4.009 17 C -0.006 4.006 18 C -0.635 4.635 19 H 0.075 0.925 20 C -0.181 4.181 21 N -0.537 5.537 22 Si 0.896 3.104 23 H -0.213 1.213 24 H -0.213 1.213 25 H -0.207 1.207 26 C -0.027 4.027 27 C 0.027 3.973 28 N -0.030 5.030 29 O 0.045 5.955 30 H 0.109 0.891 31 H 0.105 0.895 32 H 0.113 0.887 33 H 0.198 0.802 34 H 0.108 0.892 35 H 0.118 0.882 36 H 0.129 0.871 37 H 0.124 0.876 38 H 0.080 0.920 39 H 0.095 0.905 40 H 0.073 0.927 41 H 0.081 0.919 42 H 0.098 0.902 43 H 0.080 0.920 44 H 0.113 0.887 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -24.623 2.528 -3.630 25.017 hybrid contribution -1.364 1.827 -0.572 2.351 sum -25.987 4.355 -4.202 26.683 Atomic orbital electron populations 1.20385 0.83295 1.05014 1.04436 1.24518 0.96598 0.85404 1.03125 1.22443 0.89618 1.01618 1.07124 1.23435 0.96473 0.90156 1.07609 1.16372 0.80300 0.85657 0.76988 1.90813 1.86054 1.12247 1.50801 1.49760 1.05539 1.09829 1.71458 1.22586 0.75241 0.95652 1.01575 1.22497 0.93286 0.97726 1.02091 1.22829 0.99859 1.03175 0.88956 1.22134 0.90258 1.00414 1.04456 0.85480 1.19182 0.82824 0.86284 0.77528 1.90636 1.86471 1.17269 1.49692 1.50337 1.05291 1.16095 1.64988 1.23364 0.77143 0.99776 1.00628 1.20648 0.92639 0.91901 0.95405 1.21813 1.14657 1.18168 1.08866 0.92532 1.25884 1.01757 0.96525 0.93886 1.70824 1.21724 1.40472 1.20646 0.83531 0.75003 0.76169 0.75650 1.21274 1.21295 1.20719 1.23891 0.96373 0.83733 0.98689 1.22752 0.90727 0.82798 1.01029 1.74213 0.97080 1.15605 1.16087 1.84790 1.11178 1.33503 1.66042 0.89101 0.89485 0.88711 0.80193 0.89243 0.88198 0.87134 0.87561 0.91952 0.90542 0.92728 0.91945 0.90241 0.92018 0.88678 0.89002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.17 10.44 36.00 0.38 0.20 16 2 C -0.03 -0.23 7.47 -35.35 -0.26 -0.49 16 3 C -0.19 -1.68 10.92 -39.07 -0.43 -2.10 16 4 C -0.02 -0.21 7.14 -82.52 -0.59 -0.80 16 5 C 0.62 8.98 8.08 -12.10 -0.10 8.88 16 6 O -0.52 -9.02 17.68 5.37 0.10 -8.92 16 7 N -0.63 -8.48 3.61 -182.68 -0.66 -9.14 16 8 C 0.17 2.39 7.27 -3.22 -0.02 2.37 16 9 C -0.15 -1.94 3.03 -155.03 -0.47 -2.41 16 10 C -0.11 -1.34 10.24 -27.00 -0.28 -1.62 16 11 C -0.15 -2.10 5.94 -92.04 -0.55 -2.64 16 12 H 0.13 1.57 8.14 -51.93 -0.42 1.15 16 13 C 0.55 10.08 7.84 -10.98 -0.09 10.00 16 14 O -0.56 -11.55 15.86 5.56 0.09 -11.46 16 15 N -0.63 -12.29 3.61 -178.40 -0.64 -12.93 16 16 C 0.11 2.30 8.39 -2.97 -0.02 2.27 16 17 C 0.01 0.30 3.10 -90.83 -0.28 0.02 16 18 C -0.60 -15.07 8.77 -34.44 -0.30 -15.38 16 19 H 0.06 1.42 7.81 -52.49 -0.41 1.01 16 20 C 0.03 0.65 5.46 -17.82 -0.10 0.56 16 21 N -0.90 -24.83 13.65 55.43 0.76 -24.08 16 22 Si 1.07 23.13 29.90 -169.99 -5.08 18.04 16 23 H -0.29 -5.98 7.11 56.52 0.40 -5.58 16 24 H -0.29 -5.93 7.11 56.52 0.40 -5.53 16 25 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 26 C 0.10 1.89 8.12 -2.96 -0.02 1.87 16 27 C 0.15 1.66 7.93 -3.23 -0.03 1.63 16 28 N -0.33 -3.68 10.61 33.29 0.35 -3.32 16 29 O 0.12 1.09 11.18 17.24 0.19 1.28 16 30 H 0.09 0.11 8.14 -51.93 -0.42 -0.31 16 31 H 0.09 0.11 8.14 -51.93 -0.42 -0.31 16 32 H 0.09 0.10 8.14 -51.93 -0.42 -0.32 16 33 H 0.18 1.33 8.06 -52.49 -0.42 0.91 16 34 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 35 H 0.10 1.45 8.01 -51.93 -0.42 1.03 16 36 H 0.11 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.11 1.37 8.14 -51.93 -0.42 0.95 16 38 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 39 H 0.08 1.52 8.09 -51.93 -0.42 1.10 16 40 H 0.05 1.32 7.61 -51.93 -0.40 0.93 16 41 H 0.27 7.31 7.04 -40.82 -0.29 7.02 16 42 H 0.08 1.58 8.09 -51.93 -0.42 1.16 16 43 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 44 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 45 H 0.09 0.94 7.57 -51.93 -0.39 0.55 16 LS Contribution 391.29 15.07 5.90 5.90 Total: -1.00 -32.29 391.29 -8.35 -40.64 By element: Atomic # 1 Polarization: 7.83 SS G_CDS: -6.19 Total: 1.64 kcal Atomic # 6 Polarization: 5.51 SS G_CDS: -3.16 Total: 2.35 kcal Atomic # 7 Polarization: -49.28 SS G_CDS: -0.19 Total: -49.48 kcal Atomic # 8 Polarization: -19.47 SS G_CDS: 0.38 Total: -19.10 kcal Atomic # 14 Polarization: 23.13 SS G_CDS: -5.08 Total: 18.04 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -32.29 -8.35 -40.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270026111.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.795 kcal (2) G-P(sol) polarization free energy of solvation -32.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.638 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds