Wall clock time and date at job start Wed Apr 1 2020 03:24:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35313 * 126.66215 * 2 1 4 4 C 1.42277 * 103.91896 * 180.02562 * 3 2 1 5 5 C 1.48333 * 126.93691 * 180.02562 * 4 3 2 6 6 O 1.21490 * 119.99943 * 359.97438 * 5 4 3 7 7 N 1.34779 * 119.99656 * 179.97438 * 5 4 3 8 8 C 1.47722 * 134.38974 * 180.02562 * 7 5 4 9 9 C 1.53292 * 85.85773 * 155.92142 * 8 7 5 10 10 C 1.52324 * 128.81568 * 243.37865 * 9 8 7 11 11 C 1.52317 * 128.82150 * 163.01068 * 9 8 7 12 12 H 1.08997 * 117.52077 * 225.37918 * 11 9 8 13 13 C 1.50699 * 117.51816 * 10.45838 * 11 9 8 14 14 O 1.21280 * 120.00081 * 359.97438 * 13 11 9 15 15 N 1.34781 * 120.00312 * 179.97438 * 13 11 9 16 16 C 1.47580 * 134.49134 * 179.97438 * 15 13 11 17 17 C 1.53952 * 86.11500 * 155.36347 * 16 15 13 18 18 C 1.50695 * 113.74060 * 137.95290 * 17 16 15 19 19 H 1.07995 * 120.00496 * 0.02562 * 18 17 16 20 20 C 1.37880 * 119.99572 * 180.02562 * 18 17 16 21 21 N 1.31511 * 120.00327 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 119.99951 * 180.02562 * 20 18 17 23 23 H 1.48506 * 109.47297 * 59.99744 * 22 20 18 24 24 H 1.48503 * 109.47261 * 299.99924 * 22 20 18 25 25 H 1.48500 * 109.47454 * 179.97438 * 22 20 18 26 26 C 1.47578 * 134.49101 * 0.02562 * 15 13 11 27 27 C 1.47721 * 134.39638 * 0.02562 * 7 5 4 28 28 N 1.30981 * 106.12141 * 0.25757 * 4 3 2 29 29 O 1.20900 * 111.44424 * 359.54330 * 28 4 3 30 30 H 1.09002 * 109.47457 * 90.00131 * 1 2 3 31 31 H 1.09007 * 109.47246 * 210.00089 * 1 2 3 32 32 H 1.08997 * 109.47565 * 329.99703 * 1 2 3 33 33 H 1.07997 * 128.04039 * 0.04048 * 3 2 1 34 34 H 1.09002 * 113.81654 * 41.68561 * 8 7 5 35 35 H 1.09006 * 113.80890 * 270.15448 * 8 7 5 36 36 H 1.09004 * 117.51618 * 134.66478 * 10 9 8 37 37 H 1.09007 * 117.51668 * 349.53592 * 10 9 8 38 38 H 1.08998 * 113.77108 * 41.06531 * 16 15 13 39 39 H 1.08991 * 113.87349 * 269.67144 * 16 15 13 40 40 H 1.08997 * 113.74240 * 269.15892 * 17 16 15 41 41 H 0.97006 * 119.99995 * 359.97438 * 21 20 18 42 42 H 1.08997 * 113.77175 * 90.33932 * 26 15 13 43 43 H 1.09004 * 113.76848 * 318.93948 * 26 15 13 44 44 H 1.09000 * 113.81035 * 89.84275 * 27 7 5 45 45 H 1.09000 * 113.81093 * 318.31477 * 27 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3149 1.0854 0.0000 4 6 3.6271 0.5354 -0.0006 5 6 4.9075 1.2842 -0.0003 6 8 4.9007 2.4991 0.0000 7 7 6.0784 0.6168 -0.0005 8 6 7.4990 1.0221 0.0002 9 6 7.7754 -0.3510 0.6231 10 6 8.3482 -0.6788 1.9959 11 6 9.0955 -1.1035 0.7283 12 1 9.0930 -2.1630 0.4726 13 6 10.3545 -0.3531 0.3780 14 8 10.2919 0.8063 0.0276 15 7 11.5503 -0.9704 0.4542 16 6 12.9441 -0.5604 0.1952 17 6 13.3446 -1.6791 1.1742 18 6 14.5357 -2.4837 0.7216 19 1 15.0222 -2.2490 -0.2135 20 6 15.0044 -3.5196 1.5016 21 7 14.4117 -3.8058 2.6402 22 14 16.4813 -4.5166 0.9411 23 1 17.6558 -3.6201 0.7916 24 1 16.1791 -5.1582 -0.3636 25 1 16.7835 -5.5635 1.9499 26 6 11.9914 -2.3279 0.8291 27 6 6.4536 -0.8120 -0.0014 28 7 3.4760 -0.7657 -0.0066 29 8 2.3073 -1.0750 -0.0006 30 1 -0.3634 0.0000 -1.0277 31 1 -0.3634 -0.8900 0.5139 32 1 -0.3634 0.8899 0.5138 33 1 2.0300 2.1272 0.0006 34 1 7.7177 1.8586 0.6640 35 1 7.9216 1.1462 -0.9969 36 1 7.8540 -1.4593 2.5745 37 1 8.7674 0.1433 2.5761 38 1 13.1810 0.4417 0.5526 39 1 13.2722 -0.7352 -0.8294 40 1 13.4237 -1.3485 2.2097 41 1 13.6449 -3.2878 2.9315 42 1 12.0383 -3.0220 -0.0100 43 1 11.4673 -2.7373 1.6927 44 1 6.5630 -1.2376 -0.9989 45 1 5.8449 -1.4272 0.6612 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001270026111.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:24:03 Heat of formation + Delta-G solvation = 75.674756 kcal Electronic energy + Delta-G solvation = -28896.203653 eV Core-core repulsion = 24692.116761 eV Total energy + Delta-G solvation = -4204.086892 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -46.20701 -42.00221 -40.95447 -39.68904 -38.51535 -35.78974 -35.22150 -34.84121 -34.33560 -30.95794 -29.56331 -28.73017 -27.63840 -27.11660 -26.84072 -25.18020 -24.61990 -23.68885 -22.31081 -20.84618 -19.94000 -19.51723 -19.09101 -18.97395 -18.53514 -18.05755 -18.04536 -17.19177 -17.12983 -16.74964 -16.47415 -15.63129 -15.60302 -15.25783 -15.13747 -15.03810 -14.67061 -14.48062 -14.27041 -14.06157 -13.95979 -13.63741 -13.48448 -13.36715 -13.28937 -13.18128 -12.79976 -12.48491 -12.44326 -12.16644 -11.98595 -11.90104 -11.66858 -11.64941 -11.46599 -11.16957 -11.07224 -10.54873 -10.45045 -10.43740 -10.07354 -9.65497 -8.59567 -6.33151 -0.06460 0.59986 1.20417 1.45184 1.62361 1.67463 1.80606 1.87035 1.88032 1.99455 2.53480 2.61931 2.66957 2.88827 3.18827 3.22811 3.35071 3.54084 3.70915 3.85420 3.92513 4.02295 4.10086 4.19729 4.26573 4.28070 4.32211 4.35100 4.42820 4.51747 4.53627 4.58678 4.66583 4.68526 4.72537 4.76610 4.76766 4.79894 4.81904 4.84731 4.99289 5.23986 5.40659 6.01984 6.20759 6.26305 6.57782 6.60134 6.79930 6.96438 7.07722 7.46076 8.81025 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.027155 B = 0.001812 C = 0.001735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.886977 B =15447.613651 C =16136.029953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.009 4.009 3 C -0.203 4.203 4 C -0.044 4.044 5 C 0.615 3.385 6 O -0.564 6.564 7 N -0.633 5.633 8 C 0.162 3.838 9 C -0.147 4.147 10 C -0.099 4.099 11 C -0.156 4.156 12 H 0.151 0.849 13 C 0.548 3.452 14 O -0.588 6.588 15 N -0.636 5.636 16 C 0.115 3.885 17 C -0.001 4.001 18 C -0.605 4.605 19 H 0.054 0.946 20 C -0.019 4.019 21 N -0.929 5.929 22 Si 1.112 2.888 23 H -0.276 1.276 24 H -0.269 1.269 25 H -0.288 1.288 26 C 0.115 3.885 27 C 0.162 3.838 28 N -0.340 5.340 29 O 0.127 5.873 30 H 0.109 0.891 31 H 0.103 0.897 32 H 0.112 0.888 33 H 0.190 0.810 34 H 0.072 0.928 35 H 0.091 0.909 36 H 0.143 0.857 37 H 0.095 0.905 38 H 0.060 0.940 39 H 0.082 0.918 40 H 0.032 0.968 41 H 0.261 0.739 42 H 0.083 0.917 43 H 0.073 0.927 44 H 0.110 0.890 45 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.494 1.566 -4.297 28.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.072 4.072 3 C -0.226 4.226 4 C -0.202 4.202 5 C 0.403 3.597 6 O -0.443 6.443 7 N -0.367 5.367 8 C 0.040 3.960 9 C -0.149 4.149 10 C -0.136 4.136 11 C -0.177 4.177 12 H 0.168 0.832 13 C 0.339 3.661 14 O -0.470 6.470 15 N -0.369 5.369 16 C -0.007 4.007 17 C -0.020 4.020 18 C -0.643 4.643 19 H 0.073 0.927 20 C -0.219 4.219 21 N -0.565 5.565 22 Si 0.934 3.066 23 H -0.201 1.201 24 H -0.194 1.194 25 H -0.213 1.213 26 C -0.008 4.008 27 C 0.040 3.960 28 N -0.040 5.040 29 O 0.049 5.951 30 H 0.127 0.873 31 H 0.122 0.878 32 H 0.130 0.870 33 H 0.208 0.792 34 H 0.090 0.910 35 H 0.109 0.891 36 H 0.161 0.839 37 H 0.113 0.887 38 H 0.079 0.921 39 H 0.100 0.900 40 H 0.050 0.950 41 H 0.071 0.929 42 H 0.101 0.899 43 H 0.091 0.909 44 H 0.128 0.872 45 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -26.986 0.779 -4.082 27.304 hybrid contribution -0.703 2.460 -0.448 2.598 sum -27.690 3.239 -4.530 28.244 Atomic orbital electron populations 1.20690 0.79673 1.06683 1.06034 1.25243 0.98077 0.83786 1.00080 1.22672 0.88782 1.02862 1.08321 1.23278 0.96226 0.90857 1.09792 1.16770 0.81249 0.85479 0.76184 1.90772 1.86794 1.13949 1.52734 1.49852 1.05008 1.10965 1.70861 1.22516 0.76237 0.96247 1.00974 1.22480 0.93291 0.96529 1.02581 1.22995 0.98618 1.03458 0.88531 1.22095 0.88303 1.01002 1.06299 0.83177 1.19915 0.83546 0.86120 0.76485 1.90629 1.86917 1.18708 1.50783 1.50302 1.05377 1.15817 1.65430 1.23233 0.78252 0.98982 1.00256 1.20605 0.93620 0.93168 0.94594 1.22106 1.15391 1.18151 1.08635 0.92744 1.27094 1.03641 0.97667 0.93536 1.70925 1.22368 1.41322 1.21857 0.82966 0.72708 0.75091 0.75794 1.20145 1.19447 1.21343 1.23586 0.94400 0.83729 0.99068 1.22856 0.89456 0.81628 1.02026 1.74185 0.98217 1.15058 1.16572 1.84759 1.10838 1.34192 1.65303 0.87302 0.87828 0.86983 0.79248 0.90996 0.89100 0.83863 0.88668 0.92129 0.90031 0.94999 0.92866 0.89902 0.90896 0.87200 0.87438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.07 10.44 71.24 0.74 0.68 16 2 C -0.01 -0.10 7.47 25.01 0.19 0.09 16 3 C -0.20 -3.44 10.92 22.60 0.25 -3.20 16 4 C -0.04 -1.04 7.14 42.96 0.31 -0.73 16 5 C 0.61 18.14 8.08 86.93 0.70 18.84 16 6 O -0.56 -20.26 17.68 -3.68 -0.07 -20.33 16 7 N -0.63 -17.00 3.61 -850.16 -3.07 -20.07 16 8 C 0.16 4.66 7.27 86.24 0.63 5.28 16 9 C -0.15 -3.53 3.03 -52.40 -0.16 -3.69 16 10 C -0.10 -2.20 10.24 30.42 0.31 -1.89 16 11 C -0.16 -4.05 5.94 -11.72 -0.07 -4.12 16 12 H 0.15 3.26 8.14 -2.39 -0.02 3.24 16 13 C 0.55 19.75 7.84 87.66 0.69 20.44 16 14 O -0.59 -24.55 15.86 -3.03 -0.05 -24.60 16 15 N -0.64 -24.39 3.61 -836.73 -3.02 -27.41 16 16 C 0.11 4.72 8.39 86.48 0.73 5.45 16 17 C 0.00 -0.03 3.10 -10.87 -0.03 -0.06 16 18 C -0.60 -30.54 8.77 25.60 0.22 -30.32 16 19 H 0.05 2.71 7.81 -2.91 -0.02 2.69 16 20 C -0.02 -1.00 5.46 84.66 0.46 -0.54 16 21 N -0.93 -51.38 13.65 21.45 0.29 -51.08 16 22 Si 1.11 45.97 29.90 68.60 2.05 48.03 16 23 H -0.28 -10.84 7.11 99.48 0.71 -10.13 16 24 H -0.27 -10.31 7.11 99.48 0.71 -9.60 16 25 H -0.29 -12.11 7.11 99.48 0.71 -11.40 16 26 C 0.11 4.45 8.12 86.49 0.70 5.15 16 27 C 0.16 3.30 7.93 86.24 0.68 3.99 16 28 N -0.34 -7.11 10.61 -49.51 -0.53 -7.63 16 29 O 0.13 2.01 11.18 71.86 0.80 2.82 16 30 H 0.11 -0.17 8.14 -2.39 -0.02 -0.19 16 31 H 0.10 -0.16 8.14 -2.38 -0.02 -0.18 16 32 H 0.11 -0.20 8.14 -2.39 -0.02 -0.22 16 33 H 0.19 2.67 8.06 -2.91 -0.02 2.65 16 34 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 35 H 0.09 2.75 8.01 -2.38 -0.02 2.73 16 36 H 0.14 2.30 8.14 -2.39 -0.02 2.28 16 37 H 0.09 2.37 8.14 -2.38 -0.02 2.35 16 38 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 39 H 0.08 3.25 8.09 -2.39 -0.02 3.23 16 40 H 0.03 1.59 7.61 -2.39 -0.02 1.58 16 41 H 0.26 14.38 7.04 -92.70 -0.65 13.73 16 42 H 0.08 3.18 8.09 -2.39 -0.02 3.16 16 43 H 0.07 2.67 8.14 -2.38 -0.02 2.65 16 44 H 0.11 1.96 8.14 -2.39 -0.02 1.94 16 45 H 0.11 1.91 7.57 -2.39 -0.02 1.90 16 Total: -1.00 -71.71 391.29 3.90 -67.80 By element: Atomic # 1 Polarization: 15.98 SS G_CDS: 1.13 Total: 17.11 kcal Atomic # 6 Polarization: 9.02 SS G_CDS: 6.35 Total: 15.37 kcal Atomic # 7 Polarization: -99.87 SS G_CDS: -6.32 Total: -106.19 kcal Atomic # 8 Polarization: -42.80 SS G_CDS: 0.69 Total: -42.11 kcal Atomic # 14 Polarization: 45.97 SS G_CDS: 2.05 Total: 48.03 kcal Total: -71.71 3.90 -67.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270026111.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.476 kcal (2) G-P(sol) polarization free energy of solvation -71.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.801 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds