Wall clock time and date at job start Wed Apr 1 2020 03:29:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30014 * 127.33536 * 2 1 4 4 O 1.20651 * 112.30118 * 179.97438 * 3 2 1 5 5 C 1.33492 * 113.15860 * 359.97438 * 4 3 2 6 6 C 1.37359 * 106.34004 * 0.02562 * 5 4 3 7 7 C 1.47401 * 128.56533 * 179.97438 * 6 5 4 8 8 O 1.21605 * 120.00279 * 146.17595 * 7 6 5 9 9 N 1.34781 * 119.99780 * 326.17813 * 7 6 5 10 10 C 1.48140 * 127.83889 * 3.89073 * 9 7 6 11 11 C 1.53994 * 104.82052 * 219.53560 * 10 9 7 12 12 H 1.08999 * 118.02685 * 115.98448 * 11 10 9 13 13 C 1.53001 * 118.30954 * 273.09052 * 11 10 9 14 14 C 1.53005 * 60.55664 * 91.48308 * 13 11 10 15 15 C 1.50697 * 120.26215 * 111.47799 * 14 13 11 16 16 O 1.21275 * 120.00106 * 291.79767 * 15 14 13 17 17 N 1.34779 * 120.00102 * 111.79905 * 15 14 13 18 18 C 1.47072 * 136.05502 * 359.63559 * 17 15 14 19 19 C 1.53755 * 87.88532 * 152.95711 * 18 17 15 20 20 C 1.50709 * 114.26388 * 139.79047 * 19 18 17 21 21 H 1.07999 * 119.99698 * 266.47813 * 20 19 18 22 22 C 1.37876 * 119.99899 * 86.47005 * 20 19 18 23 23 N 1.31513 * 120.00238 * 0.02562 * 22 20 19 24 24 Si 1.86795 * 119.99910 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47402 * 90.00383 * 24 22 20 26 26 H 1.48500 * 109.47180 * 210.00690 * 24 22 20 27 27 H 1.48501 * 109.47402 * 330.00227 * 24 22 20 28 28 C 1.47063 * 136.06113 * 179.97438 * 17 15 14 29 29 C 1.48145 * 127.83624 * 184.21484 * 9 7 6 30 30 H 1.09003 * 109.47139 * 270.00122 * 1 2 3 31 31 H 1.08996 * 109.47351 * 29.99820 * 1 2 3 32 32 H 1.09001 * 109.47419 * 150.00301 * 1 2 3 33 33 H 1.08000 * 126.82954 * 179.97438 * 5 4 3 34 34 H 1.08997 * 110.41285 * 338.37366 * 10 9 7 35 35 H 1.09002 * 110.40696 * 100.80459 * 10 9 7 36 36 H 1.08999 * 117.43814 * 343.83667 * 13 11 10 37 37 H 1.08999 * 117.44223 * 199.13079 * 13 11 10 38 38 H 1.08997 * 113.46170 * 267.69108 * 18 17 15 39 39 H 1.09005 * 113.46654 * 38.12610 * 18 17 15 40 40 H 1.08992 * 114.39788 * 272.66989 * 19 18 17 41 41 H 0.97000 * 119.99990 * 179.97438 * 23 22 20 42 42 H 1.09001 * 113.47013 * 321.87527 * 28 17 15 43 43 H 1.09009 * 113.46421 * 92.30937 * 28 17 15 44 44 H 1.09001 * 110.40887 * 259.19661 * 29 9 7 45 45 H 1.09005 * 110.41098 * 21.50970 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2955 1.0337 0.0000 4 8 3.4607 0.7208 0.0005 5 6 3.6494 -0.6007 0.0015 6 6 2.3991 -1.1696 0.0010 7 6 2.0400 -2.5992 0.0011 8 8 1.0431 -2.9756 0.5869 9 7 2.8167 -3.4891 -0.6480 10 6 4.0998 -3.2377 -1.3443 11 6 4.0357 -4.1067 -2.6141 12 1 4.0342 -3.6023 -3.5804 13 6 4.5034 -5.5606 -2.5227 14 6 3.0298 -5.2279 -2.2803 15 6 1.9790 -5.6717 -3.2651 16 8 1.9402 -5.1801 -4.3731 17 7 1.0824 -6.6149 -2.9146 18 6 0.8117 -7.4260 -1.7180 19 6 -0.6573 -7.4952 -2.1670 20 6 -1.3038 -8.8415 -1.9652 21 1 -1.3113 -9.5628 -2.7689 22 6 -1.8856 -9.1522 -0.7544 23 7 -1.8768 -8.2737 0.2242 24 14 -2.6864 -10.8211 -0.5040 25 1 -1.6791 -11.7805 0.0157 26 1 -3.7992 -10.6950 0.4712 27 1 -3.2176 -11.3148 -1.7999 28 6 -0.0520 -7.2904 -3.5624 29 6 2.5775 -4.9395 -0.8325 30 1 -0.3633 0.0000 1.0277 31 1 -0.3634 0.8899 -0.5138 32 1 -0.3634 -0.8900 -0.5138 33 1 4.5966 -1.1195 0.0017 34 1 4.1881 -2.1843 -1.6099 35 1 4.9381 -3.5445 -0.7189 36 1 5.1038 -5.8416 -1.6575 37 1 4.7576 -6.0660 -3.4544 38 1 1.3142 -8.3932 -1.7265 39 1 0.9566 -6.8833 -0.7839 40 1 -1.2733 -6.6653 -1.8211 41 1 -2.2865 -8.4922 1.0759 42 1 -0.6429 -6.6323 -4.1995 43 1 0.2227 -8.2220 -4.0574 44 1 3.1744 -5.5161 -0.1259 45 1 1.5189 -5.1688 -0.7104 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001270027314.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:29:18 Heat of formation + Delta-G solvation = 79.668586 kcal Electronic energy + Delta-G solvation = -30443.176352 eV Core-core repulsion = 26239.262645 eV Total energy + Delta-G solvation = -4203.913707 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -45.17385 -40.96707 -39.30385 -38.32762 -36.84028 -34.71612 -33.94909 -32.71481 -32.25139 -29.89812 -29.00850 -28.42644 -26.96261 -25.43851 -25.03480 -24.10809 -22.61023 -21.75735 -21.08102 -20.14455 -19.86557 -18.39087 -17.99892 -17.62443 -17.08213 -16.73839 -16.29800 -16.06786 -15.84188 -15.28589 -14.86954 -14.65312 -14.43696 -14.05673 -13.95304 -13.48558 -13.33360 -13.31206 -13.08028 -12.74819 -12.58592 -12.48718 -12.34405 -11.92509 -11.81837 -11.55352 -11.51908 -11.35719 -11.01378 -10.83903 -10.68787 -10.56056 -10.36708 -10.13722 -9.99490 -9.96588 -9.66927 -9.25516 -9.10751 -8.90570 -8.59312 -7.94637 -6.18070 -4.24867 0.84533 1.56892 2.34776 2.75214 2.81827 2.91998 3.23123 3.27618 3.31620 3.34107 3.53568 3.78867 4.03205 4.21306 4.29810 4.32578 4.43242 4.62164 4.63821 4.77667 4.89431 5.03465 5.10395 5.10937 5.15085 5.33259 5.39525 5.43816 5.51206 5.55009 5.66475 5.78821 5.86304 5.91899 5.94861 6.02601 6.12379 6.20554 6.39891 6.52040 6.60494 6.77078 7.24580 7.53854 7.78576 7.89231 7.95496 8.15699 8.41163 8.65402 8.79166 9.42204 10.91205 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.012443 B = 0.003062 C = 0.002671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2249.800375 B = 9141.825529 C =10478.558249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.070 3.930 3 N -0.358 5.358 4 O 0.097 5.903 5 C -0.015 4.015 6 C -0.241 4.241 7 C 0.613 3.387 8 O -0.509 6.509 9 N -0.617 5.617 10 C 0.119 3.881 11 C -0.148 4.148 12 H 0.132 0.868 13 C -0.103 4.103 14 C -0.174 4.174 15 C 0.576 3.424 16 O -0.563 6.563 17 N -0.635 5.635 18 C 0.095 3.905 19 C 0.036 3.964 20 C -0.520 4.520 21 H 0.064 0.936 22 C 0.069 3.931 23 N -0.882 5.882 24 Si 0.895 3.105 25 H -0.279 1.279 26 H -0.285 1.285 27 H -0.272 1.272 28 C 0.100 3.900 29 C 0.142 3.858 30 H 0.089 0.911 31 H 0.080 0.920 32 H 0.089 0.911 33 H 0.226 0.774 34 H 0.087 0.913 35 H 0.085 0.915 36 H 0.106 0.894 37 H 0.111 0.889 38 H 0.076 0.924 39 H 0.063 0.937 40 H 0.069 0.931 41 H 0.265 0.735 42 H 0.057 0.943 43 H 0.075 0.925 44 H 0.086 0.914 45 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.586 11.746 0.397 19.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.092 4.092 3 N -0.066 5.066 4 O 0.037 5.963 5 C -0.097 4.097 6 C -0.248 4.248 7 C 0.401 3.599 8 O -0.384 6.384 9 N -0.351 5.351 10 C -0.003 4.003 11 C -0.167 4.167 12 H 0.150 0.850 13 C -0.141 4.141 14 C -0.178 4.178 15 C 0.365 3.635 16 O -0.443 6.443 17 N -0.367 5.367 18 C -0.027 4.027 19 C 0.017 3.983 20 C -0.558 4.558 21 H 0.082 0.918 22 C -0.135 4.135 23 N -0.518 5.518 24 Si 0.723 3.277 25 H -0.205 1.205 26 H -0.211 1.211 27 H -0.197 1.197 28 C -0.021 4.021 29 C 0.020 3.980 30 H 0.107 0.893 31 H 0.098 0.902 32 H 0.108 0.892 33 H 0.242 0.758 34 H 0.105 0.895 35 H 0.103 0.897 36 H 0.125 0.875 37 H 0.129 0.871 38 H 0.094 0.906 39 H 0.081 0.919 40 H 0.087 0.913 41 H 0.075 0.925 42 H 0.076 0.924 43 H 0.093 0.907 44 H 0.104 0.896 45 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 14.811 13.404 0.366 19.979 hybrid contribution -0.267 -1.850 0.178 1.877 sum 14.544 11.555 0.544 18.583 Atomic orbital electron populations 1.20258 0.84716 1.04245 1.04286 1.24865 0.99020 0.86079 0.99240 1.73668 0.89200 1.23429 1.20281 1.84561 1.21588 1.22927 1.67185 1.26464 1.00112 0.83997 0.99144 1.22255 0.93172 0.95262 1.14114 1.16394 0.82283 0.82533 0.78671 1.90908 1.25630 1.79174 1.42697 1.49044 1.22887 1.09197 1.53988 1.22027 0.86145 1.00289 0.91882 1.23669 1.03108 0.90103 0.99834 0.85017 1.23078 0.91502 0.95328 1.04166 1.22667 0.91816 1.07033 0.96317 1.18464 0.79748 0.79318 0.86011 1.90644 1.73372 1.57903 1.22411 1.49903 1.30218 1.36186 1.20422 1.23807 0.99671 0.92405 0.86860 1.20382 0.90647 0.98867 0.88399 1.20875 1.37290 0.98887 0.98710 0.91831 1.25033 0.95248 0.97171 0.96025 1.69957 1.43704 1.34369 1.03766 0.86545 0.79137 0.83881 0.78178 1.20513 1.21116 1.19717 1.23384 0.84535 0.94499 0.99705 1.21880 1.04400 0.79523 0.92152 0.89252 0.90163 0.89204 0.75768 0.89463 0.89695 0.87526 0.87103 0.90574 0.91870 0.91302 0.92541 0.92447 0.90697 0.89586 0.87693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.88 10.43 36.01 0.38 -0.51 16 2 C 0.07 0.89 7.59 -79.77 -0.61 0.28 16 3 N -0.36 -4.38 12.01 34.78 0.42 -3.96 16 4 O 0.10 0.97 11.06 18.66 0.21 1.18 16 5 C -0.02 -0.12 10.42 30.41 0.32 0.19 16 6 C -0.24 -2.90 6.03 -102.89 -0.62 -3.52 16 7 C 0.61 9.08 7.88 -12.53 -0.10 8.98 16 8 O -0.51 -9.70 17.34 5.27 0.09 -9.61 16 9 N -0.62 -7.88 3.32 -170.82 -0.57 -8.45 16 10 C 0.12 1.00 5.83 -2.62 -0.02 0.99 16 11 C -0.15 -1.56 6.76 -89.43 -0.60 -2.17 16 12 H 0.13 1.48 8.14 -51.93 -0.42 1.06 16 13 C -0.10 -1.02 9.90 -26.73 -0.26 -1.28 16 14 C -0.17 -2.46 2.72 -154.26 -0.42 -2.88 16 15 C 0.58 10.97 7.71 -10.99 -0.08 10.89 16 16 O -0.56 -12.32 17.59 5.56 0.10 -12.22 16 17 N -0.64 -12.65 3.61 -185.07 -0.67 -13.32 16 18 C 0.09 1.94 7.45 -8.37 -0.06 1.87 16 19 C 0.04 0.84 3.79 -91.13 -0.35 0.50 16 20 C -0.52 -13.07 8.83 -34.44 -0.30 -13.38 16 21 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 22 C 0.07 1.79 5.46 -17.82 -0.10 1.69 16 23 N -0.88 -24.05 13.26 55.43 0.74 -23.32 16 24 Si 0.90 19.94 29.54 -169.99 -5.02 14.92 16 25 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 26 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 27 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 28 C 0.10 2.08 8.17 -8.52 -0.07 2.01 16 29 C 0.14 2.02 5.82 -2.41 -0.01 2.00 16 30 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 31 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 33 H 0.23 0.76 6.88 -52.49 -0.36 0.40 16 34 H 0.09 0.58 5.73 -51.93 -0.30 0.28 16 35 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.11 0.78 8.14 -51.93 -0.42 0.35 16 37 H 0.11 1.11 8.14 -51.93 -0.42 0.68 16 38 H 0.08 1.51 8.10 -51.93 -0.42 1.09 16 39 H 0.06 1.29 5.89 -51.93 -0.31 0.98 16 40 H 0.07 1.79 8.11 -51.93 -0.42 1.37 16 41 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 42 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 43 H 0.07 1.47 8.10 -51.92 -0.42 1.05 16 44 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 45 H 0.10 1.89 5.69 -51.93 -0.30 1.60 16 LS Contribution 381.75 15.07 5.75 5.75 Total: -1.00 -33.38 381.75 -7.74 -41.12 By element: Atomic # 1 Polarization: 8.11 SS G_CDS: -5.87 Total: 2.23 kcal Atomic # 6 Polarization: 8.59 SS G_CDS: -2.91 Total: 5.68 kcal Atomic # 7 Polarization: -48.97 SS G_CDS: -0.08 Total: -49.05 kcal Atomic # 8 Polarization: -21.05 SS G_CDS: 0.40 Total: -20.65 kcal Atomic # 14 Polarization: 19.94 SS G_CDS: -5.02 Total: 14.92 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -33.38 -7.74 -41.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270027314.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.785 kcal (2) G-P(sol) polarization free energy of solvation -33.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.117 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds