Wall clock time and date at job start Wed Apr 1 2020 03:29:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30014 * 127.33536 * 2 1 4 4 O 1.20651 * 112.30118 * 179.97438 * 3 2 1 5 5 C 1.33492 * 113.15860 * 359.97438 * 4 3 2 6 6 C 1.37359 * 106.34004 * 0.02562 * 5 4 3 7 7 C 1.47401 * 128.56533 * 179.97438 * 6 5 4 8 8 O 1.21605 * 120.00279 * 146.17595 * 7 6 5 9 9 N 1.34781 * 119.99780 * 326.17813 * 7 6 5 10 10 C 1.48140 * 127.83889 * 3.89073 * 9 7 6 11 11 C 1.53994 * 104.82052 * 219.53560 * 10 9 7 12 12 H 1.08999 * 118.02685 * 115.98448 * 11 10 9 13 13 C 1.53001 * 118.30954 * 273.09052 * 11 10 9 14 14 C 1.53005 * 60.55664 * 91.48308 * 13 11 10 15 15 C 1.50697 * 120.26215 * 111.47799 * 14 13 11 16 16 O 1.21275 * 120.00106 * 291.79767 * 15 14 13 17 17 N 1.34779 * 120.00102 * 111.79905 * 15 14 13 18 18 C 1.47072 * 136.05502 * 359.63559 * 17 15 14 19 19 C 1.53755 * 87.88532 * 152.95711 * 18 17 15 20 20 C 1.50709 * 114.26388 * 139.79047 * 19 18 17 21 21 H 1.07999 * 119.99698 * 266.47813 * 20 19 18 22 22 C 1.37876 * 119.99899 * 86.47005 * 20 19 18 23 23 N 1.31513 * 120.00238 * 0.02562 * 22 20 19 24 24 Si 1.86795 * 119.99910 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47402 * 90.00383 * 24 22 20 26 26 H 1.48500 * 109.47180 * 210.00690 * 24 22 20 27 27 H 1.48501 * 109.47402 * 330.00227 * 24 22 20 28 28 C 1.47063 * 136.06113 * 179.97438 * 17 15 14 29 29 C 1.48145 * 127.83624 * 184.21484 * 9 7 6 30 30 H 1.09003 * 109.47139 * 270.00122 * 1 2 3 31 31 H 1.08996 * 109.47351 * 29.99820 * 1 2 3 32 32 H 1.09001 * 109.47419 * 150.00301 * 1 2 3 33 33 H 1.08000 * 126.82954 * 179.97438 * 5 4 3 34 34 H 1.08997 * 110.41285 * 338.37366 * 10 9 7 35 35 H 1.09002 * 110.40696 * 100.80459 * 10 9 7 36 36 H 1.08999 * 117.43814 * 343.83667 * 13 11 10 37 37 H 1.08999 * 117.44223 * 199.13079 * 13 11 10 38 38 H 1.08997 * 113.46170 * 267.69108 * 18 17 15 39 39 H 1.09005 * 113.46654 * 38.12610 * 18 17 15 40 40 H 1.08992 * 114.39788 * 272.66989 * 19 18 17 41 41 H 0.97000 * 119.99990 * 179.97438 * 23 22 20 42 42 H 1.09001 * 113.47013 * 321.87527 * 28 17 15 43 43 H 1.09009 * 113.46421 * 92.30937 * 28 17 15 44 44 H 1.09001 * 110.40887 * 259.19661 * 29 9 7 45 45 H 1.09005 * 110.41098 * 21.50970 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2955 1.0337 0.0000 4 8 3.4607 0.7208 0.0005 5 6 3.6494 -0.6007 0.0015 6 6 2.3991 -1.1696 0.0010 7 6 2.0400 -2.5992 0.0011 8 8 1.0431 -2.9756 0.5869 9 7 2.8167 -3.4891 -0.6480 10 6 4.0998 -3.2377 -1.3443 11 6 4.0357 -4.1067 -2.6141 12 1 4.0342 -3.6023 -3.5804 13 6 4.5034 -5.5606 -2.5227 14 6 3.0298 -5.2279 -2.2803 15 6 1.9790 -5.6717 -3.2651 16 8 1.9402 -5.1801 -4.3731 17 7 1.0824 -6.6149 -2.9146 18 6 0.8117 -7.4260 -1.7180 19 6 -0.6573 -7.4952 -2.1670 20 6 -1.3038 -8.8415 -1.9652 21 1 -1.3113 -9.5628 -2.7689 22 6 -1.8856 -9.1522 -0.7544 23 7 -1.8768 -8.2737 0.2242 24 14 -2.6864 -10.8211 -0.5040 25 1 -1.6791 -11.7805 0.0157 26 1 -3.7992 -10.6950 0.4712 27 1 -3.2176 -11.3148 -1.7999 28 6 -0.0520 -7.2904 -3.5624 29 6 2.5775 -4.9395 -0.8325 30 1 -0.3633 0.0000 1.0277 31 1 -0.3634 0.8899 -0.5138 32 1 -0.3634 -0.8900 -0.5138 33 1 4.5966 -1.1195 0.0017 34 1 4.1881 -2.1843 -1.6099 35 1 4.9381 -3.5445 -0.7189 36 1 5.1038 -5.8416 -1.6575 37 1 4.7576 -6.0660 -3.4544 38 1 1.3142 -8.3932 -1.7265 39 1 0.9566 -6.8833 -0.7839 40 1 -1.2733 -6.6653 -1.8211 41 1 -2.2865 -8.4922 1.0759 42 1 -0.6429 -6.6323 -4.1995 43 1 0.2227 -8.2220 -4.0574 44 1 3.1744 -5.5161 -0.1259 45 1 1.5189 -5.1688 -0.7104 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001270027314.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:29:16 Heat of formation + Delta-G solvation = 57.179289 kcal Electronic energy + Delta-G solvation = -30444.151561 eV Core-core repulsion = 26239.262645 eV Total energy + Delta-G solvation = -4204.888916 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -46.04205 -42.07876 -40.74440 -39.60498 -38.38228 -35.61845 -34.96326 -34.67420 -33.11523 -31.39872 -29.98453 -29.57710 -27.90290 -27.22401 -26.71325 -25.06606 -23.94372 -22.60528 -22.06487 -21.38873 -21.08939 -19.70284 -18.91749 -18.79345 -18.56764 -18.03608 -17.70075 -17.06601 -16.91311 -16.66335 -16.55903 -16.14391 -15.65837 -15.19748 -14.98510 -14.67634 -14.42691 -14.33331 -14.18570 -14.16403 -13.94880 -13.59860 -13.48017 -13.22445 -13.18963 -13.01086 -12.77026 -12.67400 -12.56779 -12.42699 -12.21830 -11.80840 -11.61161 -11.35090 -11.08768 -11.03295 -11.00124 -10.82413 -10.73013 -10.52627 -9.96373 -9.62034 -8.16966 -6.29957 0.07291 0.64603 1.34255 1.46513 1.47241 1.48853 1.58444 1.81879 1.91825 2.19497 2.40630 2.46265 2.90394 3.12453 3.23213 3.29729 3.35430 3.44618 3.62396 3.78082 3.84536 3.99938 4.17677 4.30541 4.31073 4.34098 4.41832 4.47940 4.50924 4.53018 4.58036 4.61880 4.64926 4.65433 4.76308 4.81321 4.87948 4.92182 4.98957 5.00670 5.06478 5.15262 5.55967 5.78429 6.19798 6.27533 6.79134 6.83981 6.85865 7.08610 7.14000 7.40683 8.92653 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.012443 B = 0.003062 C = 0.002671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2249.800375 B = 9141.825529 C =10478.558249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.047 3.953 3 N -0.373 5.373 4 O 0.107 5.893 5 C 0.033 3.967 6 C -0.276 4.276 7 C 0.610 3.390 8 O -0.572 6.572 9 N -0.616 5.616 10 C 0.117 3.883 11 C -0.130 4.130 12 H 0.124 0.876 13 C -0.068 4.068 14 C -0.212 4.212 15 C 0.568 3.432 16 O -0.598 6.598 17 N -0.639 5.639 18 C 0.116 3.884 19 C 0.021 3.979 20 C -0.528 4.528 21 H 0.070 0.930 22 C 0.020 3.980 23 N -0.919 5.919 24 Si 0.961 3.039 25 H -0.269 1.269 26 H -0.289 1.289 27 H -0.266 1.266 28 C 0.105 3.895 29 C 0.147 3.853 30 H 0.090 0.910 31 H 0.095 0.905 32 H 0.067 0.933 33 H 0.282 0.718 34 H 0.111 0.889 35 H 0.136 0.864 36 H 0.147 0.853 37 H 0.111 0.889 38 H 0.088 0.912 39 H 0.058 0.942 40 H 0.027 0.973 41 H 0.264 0.736 42 H 0.050 0.950 43 H 0.091 0.909 44 H 0.114 0.886 45 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.824 11.574 0.432 22.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.115 4.115 3 N -0.080 5.080 4 O 0.047 5.953 5 C -0.049 4.049 6 C -0.283 4.283 7 C 0.400 3.600 8 O -0.452 6.452 9 N -0.349 5.349 10 C -0.003 4.003 11 C -0.150 4.150 12 H 0.142 0.858 13 C -0.105 4.105 14 C -0.217 4.217 15 C 0.360 3.640 16 O -0.481 6.481 17 N -0.370 5.370 18 C -0.006 4.006 19 C 0.002 3.998 20 C -0.566 4.566 21 H 0.088 0.912 22 C -0.181 4.181 23 N -0.557 5.557 24 Si 0.786 3.214 25 H -0.195 1.195 26 H -0.215 1.215 27 H -0.190 1.190 28 C -0.017 4.017 29 C 0.024 3.976 30 H 0.109 0.891 31 H 0.113 0.887 32 H 0.086 0.914 33 H 0.297 0.703 34 H 0.129 0.871 35 H 0.154 0.846 36 H 0.165 0.835 37 H 0.129 0.871 38 H 0.106 0.894 39 H 0.077 0.923 40 H 0.046 0.954 41 H 0.073 0.927 42 H 0.068 0.932 43 H 0.109 0.891 44 H 0.132 0.868 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 19.095 13.242 0.364 23.240 hybrid contribution -1.551 -1.732 0.057 2.326 sum 17.544 11.510 0.421 20.987 Atomic orbital electron populations 1.20206 0.85086 1.03811 1.04300 1.25050 0.99486 0.86849 1.00067 1.73671 0.89877 1.23492 1.20912 1.84542 1.20558 1.23845 1.66361 1.27317 1.00420 0.82736 0.94414 1.22047 0.94925 0.93650 1.17712 1.16776 0.81542 0.83696 0.78007 1.90870 1.28356 1.80303 1.45674 1.49128 1.24104 1.08364 1.53286 1.22484 0.85167 1.01481 0.91172 1.23883 0.99959 0.90448 1.00669 0.85795 1.23313 0.87323 0.94150 1.05706 1.22521 0.92524 1.11700 0.94919 1.19389 0.80032 0.77974 0.86622 1.90610 1.74455 1.58680 1.24377 1.49898 1.30561 1.36762 1.19818 1.23455 0.97375 0.92895 0.86865 1.20237 0.91879 0.96968 0.90739 1.21187 1.37144 0.99406 0.98819 0.91204 1.25817 0.95886 1.00584 0.95766 1.70098 1.45021 1.36366 1.04224 0.85508 0.78104 0.79708 0.78055 1.19459 1.21545 1.19002 1.23244 0.84981 0.95250 0.98207 1.21733 1.01847 0.80965 0.93016 0.89112 0.88677 0.91425 0.70285 0.87122 0.84612 0.83486 0.87069 0.89371 0.92336 0.95428 0.92724 0.93173 0.89093 0.86843 0.92850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.88 10.43 71.24 0.74 -1.14 16 2 C 0.05 1.20 7.59 45.15 0.34 1.54 16 3 N -0.37 -8.61 12.01 -44.79 -0.54 -9.15 16 4 O 0.11 1.79 11.06 77.01 0.85 2.64 16 5 C 0.03 0.40 10.42 67.61 0.70 1.10 16 6 C -0.28 -6.30 6.03 -18.75 -0.11 -6.42 16 7 C 0.61 18.16 7.88 86.66 0.68 18.84 16 8 O -0.57 -23.41 17.34 -4.05 -0.07 -23.48 16 9 N -0.62 -14.68 3.32 -812.62 -2.70 -17.38 16 10 C 0.12 1.38 5.83 86.40 0.50 1.88 16 11 C -0.13 -2.27 6.76 -10.02 -0.07 -2.33 16 12 H 0.12 2.42 8.14 -2.39 -0.02 2.40 16 13 C -0.07 -1.03 9.90 30.60 0.30 -0.73 16 14 C -0.21 -5.65 2.72 -52.02 -0.14 -5.79 16 15 C 0.57 21.91 7.71 87.66 0.68 22.59 16 16 O -0.60 -26.61 17.59 -3.01 -0.05 -26.67 16 17 N -0.64 -26.23 3.61 -857.84 -3.10 -29.33 16 18 C 0.12 4.91 7.45 83.26 0.62 5.53 16 19 C 0.02 1.03 3.79 -11.12 -0.04 0.99 16 20 C -0.53 -27.17 8.83 25.60 0.23 -26.94 16 21 H 0.07 3.43 7.81 -2.91 -0.02 3.41 16 22 C 0.02 1.04 5.46 84.65 0.46 1.50 16 23 N -0.92 -52.10 13.26 21.45 0.28 -51.82 16 24 Si 0.96 41.31 29.54 68.60 2.03 43.33 16 25 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 26 H -0.29 -12.54 7.11 99.48 0.71 -11.84 16 27 H -0.27 -11.02 7.11 99.48 0.71 -10.32 16 28 C 0.11 4.52 8.17 83.17 0.68 5.20 16 29 C 0.15 4.06 5.82 86.54 0.50 4.57 16 30 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 31 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 32 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 33 H 0.28 -0.14 6.88 -2.91 -0.02 -0.16 16 34 H 0.11 0.81 5.73 -2.39 -0.01 0.79 16 35 H 0.14 0.39 8.14 -2.39 -0.02 0.37 16 36 H 0.15 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.11 1.77 8.14 -2.39 -0.02 1.75 16 38 H 0.09 3.49 8.10 -2.39 -0.02 3.47 16 39 H 0.06 2.53 5.89 -2.38 -0.01 2.51 16 40 H 0.03 1.56 8.11 -2.39 -0.02 1.54 16 41 H 0.26 14.29 8.31 -92.71 -0.77 13.52 16 42 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 43 H 0.09 3.59 8.10 -2.38 -0.02 3.57 16 44 H 0.11 2.46 8.14 -2.39 -0.02 2.44 16 45 H 0.05 2.05 5.69 -2.38 -0.01 2.03 16 Total: -1.00 -80.97 381.75 3.82 -77.15 By element: Atomic # 1 Polarization: 13.26 SS G_CDS: 1.03 Total: 14.29 kcal Atomic # 6 Polarization: 14.31 SS G_CDS: 6.08 Total: 20.40 kcal Atomic # 7 Polarization: -101.62 SS G_CDS: -6.05 Total: -107.67 kcal Atomic # 8 Polarization: -48.23 SS G_CDS: 0.73 Total: -47.50 kcal Atomic # 14 Polarization: 41.31 SS G_CDS: 2.03 Total: 43.33 kcal Total: -80.97 3.82 -77.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270027314.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.329 kcal (2) G-P(sol) polarization free energy of solvation -80.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.149 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds