Wall clock time and date at job start Wed Apr 1 2020 03:28:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30011 * 127.33680 * 2 1 4 4 O 1.20655 * 112.30215 * 179.97438 * 3 2 1 5 5 C 1.33497 * 113.15592 * 359.71996 * 4 3 2 6 6 C 1.37361 * 106.34269 * 0.44866 * 5 4 3 7 7 C 1.47391 * 128.56901 * 179.85488 * 6 5 4 8 8 O 1.21605 * 120.00454 * 179.97438 * 7 6 5 9 9 N 1.34784 * 119.99684 * 359.67873 * 7 6 5 10 10 C 1.47244 * 135.90102 * 359.62951 * 9 7 6 11 11 C 1.52909 * 87.58862 * 153.78284 * 10 9 7 12 12 C 1.52091 * 129.75345 * 164.46635 * 11 10 9 13 13 C 1.52090 * 130.01462 * 246.52000 * 11 10 9 14 14 H 1.09000 * 117.51815 * 348.45151 * 13 11 10 15 15 C 1.50697 * 117.52381 * 133.56698 * 13 11 10 16 16 O 1.21275 * 120.00263 * 359.97438 * 15 13 11 17 17 N 1.34779 * 119.99829 * 180.02562 * 15 13 11 18 18 C 1.47062 * 136.05710 * 359.62469 * 17 15 13 19 19 C 1.53751 * 87.89099 * 152.96597 * 18 17 15 20 20 C 1.50702 * 114.27142 * 139.78920 * 19 18 17 21 21 H 1.07998 * 119.99796 * 266.47951 * 20 19 18 22 22 C 1.37876 * 119.99862 * 86.47747 * 20 19 18 23 23 N 1.31518 * 119.99960 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 119.99915 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.47210 * 60.00079 * 24 22 20 26 26 H 1.48496 * 109.46970 * 179.97438 * 24 22 20 27 27 H 1.48496 * 109.46989 * 299.99896 * 24 22 20 28 28 C 1.47069 * 136.05590 * 179.97438 * 17 15 13 29 29 C 1.47255 * 135.89829 * 179.97438 * 9 7 6 30 30 H 1.09010 * 109.47017 * 270.04462 * 1 2 3 31 31 H 1.09003 * 109.47078 * 30.03547 * 1 2 3 32 32 H 1.08999 * 109.47467 * 150.04119 * 1 2 3 33 33 H 1.08004 * 126.83175 * 180.32752 * 5 4 3 34 34 H 1.09002 * 113.51619 * 268.44007 * 10 9 7 35 35 H 1.09002 * 113.51498 * 39.03041 * 10 9 7 36 36 H 1.09001 * 117.52092 * 226.77258 * 12 11 10 37 37 H 1.09000 * 117.52080 * 11.93117 * 12 11 10 38 38 H 1.09006 * 113.46614 * 267.69475 * 18 17 15 39 39 H 1.08998 * 113.47023 * 38.13216 * 18 17 15 40 40 H 1.09004 * 114.39727 * 272.67802 * 19 18 17 41 41 H 0.97004 * 119.99647 * 180.02562 * 23 22 20 42 42 H 1.08998 * 113.46763 * 321.86431 * 28 17 15 43 43 H 1.08994 * 113.46352 * 92.24517 * 28 17 15 44 44 H 1.09000 * 113.51204 * 320.97563 * 29 9 7 45 45 H 1.08997 * 113.51264 * 91.49581 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2955 1.0337 0.0000 4 8 3.4608 0.7207 0.0005 5 6 3.6494 -0.6009 0.0069 6 6 2.3991 -1.1697 0.0006 7 6 2.0399 -2.5992 0.0008 8 8 0.8704 -2.9324 -0.0050 9 7 3.0079 -3.5372 0.0013 10 6 4.4803 -3.5373 -0.0048 11 6 4.4187 -4.9045 0.6770 12 6 5.5040 -5.9564 0.8469 13 6 4.8471 -5.3198 2.0760 14 1 5.4397 -4.6098 2.6528 15 6 3.8910 -6.1686 2.8739 16 8 2.8254 -6.4946 2.3955 17 7 4.2199 -6.5645 4.1195 18 6 5.3723 -6.3905 5.0163 19 6 4.4060 -6.5654 6.1993 20 6 4.9575 -7.3914 7.3328 21 1 4.7618 -8.4527 7.3725 22 6 5.7119 -6.7920 8.3190 23 7 5.9506 -5.4996 8.2703 24 14 6.3961 -7.8160 9.7236 25 1 7.2898 -8.8694 9.1787 26 1 7.1664 -6.9416 10.6440 27 1 5.2766 -8.4509 10.4643 28 6 3.5866 -7.3658 5.1777 29 6 3.0541 -5.0090 0.0021 30 1 -0.3633 0.0008 1.0278 31 1 -0.3633 0.8897 -0.5144 32 1 -0.3634 -0.8903 -0.5132 33 1 4.5966 -1.1197 0.0136 34 1 4.9111 -3.5693 -1.0056 35 1 4.9178 -2.7578 0.6190 36 1 5.2448 -6.9895 0.6156 37 1 6.5286 -5.6649 0.6156 38 1 6.1093 -7.1896 4.9361 39 1 5.8188 -5.3976 4.9617 40 1 3.9285 -5.6433 6.5308 41 1 6.4817 -5.0781 8.9640 42 1 2.5120 -7.2038 5.2606 43 1 3.8517 -8.4224 5.1394 44 1 2.2916 -5.4677 0.6316 45 1 3.0938 -5.4434 -0.9968 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001270027394.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:28:52 Heat of formation + Delta-G solvation = 107.037017 kcal Electronic energy + Delta-G solvation = -29481.319909 eV Core-core repulsion = 25278.592986 eV Total energy + Delta-G solvation = -4202.726923 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -45.19866 -41.00272 -39.46221 -38.38098 -37.00805 -34.73727 -34.69009 -32.74977 -32.50448 -29.58200 -29.13680 -28.14709 -26.49782 -25.66277 -25.04306 -24.31975 -23.31688 -21.56661 -20.69661 -20.21041 -19.21964 -18.08116 -18.01233 -17.89725 -17.00873 -16.91307 -16.59688 -16.15564 -15.89753 -15.21287 -15.04040 -14.74584 -14.47445 -14.14969 -13.96305 -13.61122 -13.47770 -13.29674 -13.20610 -13.03444 -12.69782 -12.54579 -12.32162 -12.03390 -11.59694 -11.59276 -11.40094 -11.00433 -10.99414 -10.86618 -10.81174 -10.50861 -10.39251 -10.19979 -10.09168 -10.05848 -9.65071 -9.28197 -9.09163 -8.89353 -8.63697 -7.94760 -6.23768 -4.29675 0.74956 1.51467 2.29738 2.75262 2.80072 2.97890 3.21386 3.23659 3.27373 3.30772 3.69693 3.75844 3.97051 3.99520 4.16163 4.28855 4.33197 4.55242 4.65618 4.82307 4.98537 5.02404 5.03082 5.09611 5.16667 5.25533 5.32933 5.41151 5.45940 5.48104 5.51114 5.68674 5.78794 5.91041 5.96695 5.98764 6.12434 6.18933 6.38219 6.49164 6.57620 6.73426 7.42493 7.49249 7.73849 7.84934 7.93185 8.11702 8.43266 8.66255 8.74344 9.37469 10.85902 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.013705 B = 0.002335 C = 0.002193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2042.544388 B =11988.390629 C =12766.007482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.071 3.929 3 N -0.359 5.359 4 O 0.097 5.903 5 C -0.009 4.009 6 C -0.245 4.245 7 C 0.625 3.375 8 O -0.523 6.523 9 N -0.638 5.638 10 C 0.132 3.868 11 C -0.155 4.155 12 C -0.117 4.117 13 C -0.137 4.137 14 H 0.127 0.873 15 C 0.559 3.441 16 O -0.559 6.559 17 N -0.638 5.638 18 C 0.099 3.901 19 C 0.035 3.965 20 C -0.519 4.519 21 H 0.063 0.937 22 C 0.069 3.931 23 N -0.886 5.886 24 Si 0.896 3.104 25 H -0.275 1.275 26 H -0.286 1.286 27 H -0.275 1.275 28 C 0.100 3.900 29 C 0.143 3.857 30 H 0.086 0.914 31 H 0.078 0.922 32 H 0.095 0.905 33 H 0.225 0.775 34 H 0.101 0.899 35 H 0.080 0.920 36 H 0.106 0.894 37 H 0.112 0.888 38 H 0.076 0.924 39 H 0.059 0.941 40 H 0.068 0.932 41 H 0.265 0.735 42 H 0.057 0.943 43 H 0.074 0.926 44 H 0.111 0.889 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.623 7.084 -18.744 20.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.092 4.092 3 N -0.067 5.067 4 O 0.038 5.962 5 C -0.091 4.091 6 C -0.253 4.253 7 C 0.415 3.585 8 O -0.400 6.400 9 N -0.374 5.374 10 C 0.009 3.991 11 C -0.156 4.156 12 C -0.155 4.155 13 C -0.158 4.158 14 H 0.145 0.855 15 C 0.348 3.652 16 O -0.440 6.440 17 N -0.370 5.370 18 C -0.024 4.024 19 C 0.016 3.984 20 C -0.557 4.557 21 H 0.082 0.918 22 C -0.135 4.135 23 N -0.523 5.523 24 Si 0.724 3.276 25 H -0.200 1.200 26 H -0.212 1.212 27 H -0.200 1.200 28 C -0.022 4.022 29 C 0.022 3.978 30 H 0.105 0.895 31 H 0.097 0.903 32 H 0.114 0.886 33 H 0.241 0.759 34 H 0.119 0.881 35 H 0.098 0.902 36 H 0.125 0.875 37 H 0.130 0.870 38 H 0.094 0.906 39 H 0.078 0.922 40 H 0.086 0.914 41 H 0.075 0.925 42 H 0.076 0.924 43 H 0.092 0.908 44 H 0.129 0.871 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 0.098 8.462 -19.100 20.891 hybrid contribution 0.788 -1.267 0.863 1.724 sum 0.885 7.195 -18.236 19.624 Atomic orbital electron populations 1.20296 0.84726 1.04372 1.04182 1.24888 0.99056 0.86141 0.99075 1.73684 0.89225 1.23488 1.20296 1.84578 1.21603 1.22988 1.67026 1.26659 1.00419 0.84039 0.98012 1.22270 0.92940 0.95216 1.14837 1.16150 0.83896 0.82067 0.76392 1.90814 1.17385 1.81436 1.50383 1.49208 1.06731 1.08308 1.73106 1.22725 0.80710 0.95277 1.00387 1.21881 0.97926 0.96823 0.99000 1.22801 0.96908 0.98060 0.97777 1.21998 1.01716 1.02570 0.89520 0.85501 1.18995 0.86351 0.80287 0.79586 1.90595 1.24908 1.59133 1.69354 1.49948 1.23499 1.51111 1.12457 1.23681 0.90627 1.00198 0.87860 1.20382 0.91344 0.96359 0.90314 1.20865 1.33007 0.94629 1.07157 0.91850 1.25028 0.95794 0.94911 0.97753 1.69940 1.38340 1.09510 1.34470 0.86586 0.79197 0.80042 0.81811 1.20036 1.21203 1.20016 1.23363 0.98326 0.96022 0.84448 1.22569 0.96003 0.78940 1.00269 0.89543 0.90343 0.88582 0.75907 0.88112 0.90164 0.87517 0.86977 0.90628 0.92236 0.91379 0.92533 0.92432 0.90775 0.87106 0.89217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.81 10.15 36.01 0.37 -0.44 16 2 C 0.07 0.86 7.58 -79.77 -0.60 0.26 16 3 N -0.36 -4.36 12.01 34.78 0.42 -3.94 16 4 O 0.10 0.99 11.06 18.64 0.21 1.20 16 5 C -0.01 -0.08 11.49 30.41 0.35 0.27 16 6 C -0.25 -2.90 6.46 -102.89 -0.66 -3.57 16 7 C 0.63 8.84 8.06 -12.53 -0.10 8.74 16 8 O -0.52 -9.22 16.46 5.27 0.09 -9.13 16 9 N -0.64 -7.63 3.69 -185.61 -0.68 -8.32 16 10 C 0.13 0.99 7.27 -7.48 -0.05 0.94 16 11 C -0.15 -1.61 3.15 -155.69 -0.49 -2.10 16 12 C -0.12 -1.08 10.24 -27.08 -0.28 -1.36 16 13 C -0.14 -1.78 6.02 -92.13 -0.55 -2.33 16 14 H 0.13 1.52 8.14 -51.93 -0.42 1.10 16 15 C 0.56 10.11 7.86 -10.99 -0.09 10.03 16 16 O -0.56 -11.61 15.03 5.56 0.08 -11.53 16 17 N -0.64 -12.30 3.69 -185.07 -0.68 -12.98 16 18 C 0.10 1.95 8.00 -8.38 -0.07 1.88 16 19 C 0.04 0.80 3.79 -91.13 -0.35 0.45 16 20 C -0.52 -12.81 8.83 -34.44 -0.30 -13.12 16 21 H 0.06 1.53 7.81 -52.49 -0.41 1.12 16 22 C 0.07 1.74 5.46 -17.82 -0.10 1.65 16 23 N -0.89 -23.51 13.26 55.43 0.74 -22.77 16 24 Si 0.90 19.57 29.54 -169.99 -5.02 14.55 16 25 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 26 H -0.29 -6.27 7.11 56.52 0.40 -5.87 16 27 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 28 C 0.10 2.03 8.17 -8.51 -0.07 1.96 16 29 C 0.14 1.77 8.20 -7.64 -0.06 1.70 16 30 H 0.09 0.85 8.14 -51.92 -0.42 0.43 16 31 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.10 1.06 7.10 -51.93 -0.37 0.69 16 33 H 0.22 0.94 5.53 -52.48 -0.29 0.65 16 34 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.08 0.46 6.32 -51.93 -0.33 0.13 16 36 H 0.11 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.11 0.71 8.14 -51.93 -0.42 0.28 16 38 H 0.08 1.45 8.10 -51.93 -0.42 1.03 16 39 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 40 H 0.07 1.71 8.11 -51.93 -0.42 1.29 16 41 H 0.26 6.73 8.31 -40.82 -0.34 6.39 16 42 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 43 H 0.07 1.43 8.10 -51.93 -0.42 1.01 16 44 H 0.11 1.82 5.98 -51.93 -0.31 1.51 16 45 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 385.43 15.07 5.81 5.81 Total: -1.00 -32.64 385.43 -8.03 -40.66 By element: Atomic # 1 Polarization: 7.40 SS G_CDS: -5.91 Total: 1.49 kcal Atomic # 6 Polarization: 8.02 SS G_CDS: -3.07 Total: 4.96 kcal Atomic # 7 Polarization: -47.79 SS G_CDS: -0.21 Total: -48.01 kcal Atomic # 8 Polarization: -19.84 SS G_CDS: 0.38 Total: -19.46 kcal Atomic # 14 Polarization: 19.57 SS G_CDS: -5.02 Total: 14.55 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -32.64 -8.03 -40.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270027394.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.701 kcal (2) G-P(sol) polarization free energy of solvation -32.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.664 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds