Wall clock time and date at job start Wed Apr 1 2020 03:28:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30011 * 127.33680 * 2 1 4 4 O 1.20655 * 112.30215 * 179.97438 * 3 2 1 5 5 C 1.33497 * 113.15592 * 359.71996 * 4 3 2 6 6 C 1.37361 * 106.34269 * 0.44866 * 5 4 3 7 7 C 1.47391 * 128.56901 * 179.85488 * 6 5 4 8 8 O 1.21605 * 120.00454 * 179.97438 * 7 6 5 9 9 N 1.34784 * 119.99684 * 359.67873 * 7 6 5 10 10 C 1.47244 * 135.90102 * 359.62951 * 9 7 6 11 11 C 1.52909 * 87.58862 * 153.78284 * 10 9 7 12 12 C 1.52091 * 129.75345 * 164.46635 * 11 10 9 13 13 C 1.52090 * 130.01462 * 246.52000 * 11 10 9 14 14 H 1.09000 * 117.51815 * 348.45151 * 13 11 10 15 15 C 1.50697 * 117.52381 * 133.56698 * 13 11 10 16 16 O 1.21275 * 120.00263 * 359.97438 * 15 13 11 17 17 N 1.34779 * 119.99829 * 180.02562 * 15 13 11 18 18 C 1.47062 * 136.05710 * 359.62469 * 17 15 13 19 19 C 1.53751 * 87.89099 * 152.96597 * 18 17 15 20 20 C 1.50702 * 114.27142 * 139.78920 * 19 18 17 21 21 H 1.07998 * 119.99796 * 266.47951 * 20 19 18 22 22 C 1.37876 * 119.99862 * 86.47747 * 20 19 18 23 23 N 1.31518 * 119.99960 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 119.99915 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.47210 * 60.00079 * 24 22 20 26 26 H 1.48496 * 109.46970 * 179.97438 * 24 22 20 27 27 H 1.48496 * 109.46989 * 299.99896 * 24 22 20 28 28 C 1.47069 * 136.05590 * 179.97438 * 17 15 13 29 29 C 1.47255 * 135.89829 * 179.97438 * 9 7 6 30 30 H 1.09010 * 109.47017 * 270.04462 * 1 2 3 31 31 H 1.09003 * 109.47078 * 30.03547 * 1 2 3 32 32 H 1.08999 * 109.47467 * 150.04119 * 1 2 3 33 33 H 1.08004 * 126.83175 * 180.32752 * 5 4 3 34 34 H 1.09002 * 113.51619 * 268.44007 * 10 9 7 35 35 H 1.09002 * 113.51498 * 39.03041 * 10 9 7 36 36 H 1.09001 * 117.52092 * 226.77258 * 12 11 10 37 37 H 1.09000 * 117.52080 * 11.93117 * 12 11 10 38 38 H 1.09006 * 113.46614 * 267.69475 * 18 17 15 39 39 H 1.08998 * 113.47023 * 38.13216 * 18 17 15 40 40 H 1.09004 * 114.39727 * 272.67802 * 19 18 17 41 41 H 0.97004 * 119.99647 * 180.02562 * 23 22 20 42 42 H 1.08998 * 113.46763 * 321.86431 * 28 17 15 43 43 H 1.08994 * 113.46352 * 92.24517 * 28 17 15 44 44 H 1.09000 * 113.51204 * 320.97563 * 29 9 7 45 45 H 1.08997 * 113.51264 * 91.49581 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2955 1.0337 0.0000 4 8 3.4608 0.7207 0.0005 5 6 3.6494 -0.6009 0.0069 6 6 2.3991 -1.1697 0.0006 7 6 2.0399 -2.5992 0.0008 8 8 0.8704 -2.9324 -0.0050 9 7 3.0079 -3.5372 0.0013 10 6 4.4803 -3.5373 -0.0048 11 6 4.4187 -4.9045 0.6770 12 6 5.5040 -5.9564 0.8469 13 6 4.8471 -5.3198 2.0760 14 1 5.4397 -4.6098 2.6528 15 6 3.8910 -6.1686 2.8739 16 8 2.8254 -6.4946 2.3955 17 7 4.2199 -6.5645 4.1195 18 6 5.3723 -6.3905 5.0163 19 6 4.4060 -6.5654 6.1993 20 6 4.9575 -7.3914 7.3328 21 1 4.7618 -8.4527 7.3725 22 6 5.7119 -6.7920 8.3190 23 7 5.9506 -5.4996 8.2703 24 14 6.3961 -7.8160 9.7236 25 1 7.2898 -8.8694 9.1787 26 1 7.1664 -6.9416 10.6440 27 1 5.2766 -8.4509 10.4643 28 6 3.5866 -7.3658 5.1777 29 6 3.0541 -5.0090 0.0021 30 1 -0.3633 0.0008 1.0278 31 1 -0.3633 0.8897 -0.5144 32 1 -0.3634 -0.8903 -0.5132 33 1 4.5966 -1.1197 0.0136 34 1 4.9111 -3.5693 -1.0056 35 1 4.9178 -2.7578 0.6190 36 1 5.2448 -6.9895 0.6156 37 1 6.5286 -5.6649 0.6156 38 1 6.1093 -7.1896 4.9361 39 1 5.8188 -5.3976 4.9617 40 1 3.9285 -5.6433 6.5308 41 1 6.4817 -5.0781 8.9640 42 1 2.5120 -7.2038 5.2606 43 1 3.8517 -8.4224 5.1394 44 1 2.2916 -5.4677 0.6316 45 1 3.0938 -5.4434 -0.9968 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001270027394.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:28:51 Heat of formation + Delta-G solvation = 85.637282 kcal Electronic energy + Delta-G solvation = -29482.247871 eV Core-core repulsion = 25278.592986 eV Total energy + Delta-G solvation = -4203.654885 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -46.04401 -41.96786 -40.87306 -39.55747 -38.43821 -35.70398 -35.57038 -34.64138 -33.35356 -31.12113 -30.08590 -29.08096 -27.38072 -27.22073 -26.69379 -25.21842 -24.50379 -22.37267 -22.04437 -21.27608 -20.29033 -19.35341 -18.86027 -18.77502 -18.69731 -18.05108 -17.79197 -17.15336 -16.86746 -16.63660 -16.46616 -16.11364 -15.80979 -15.21262 -14.95846 -14.68547 -14.56644 -14.30341 -14.20501 -14.15139 -14.03191 -13.50259 -13.38447 -13.26407 -13.19407 -13.12480 -12.71900 -12.61666 -12.43177 -12.18690 -11.95393 -11.63910 -11.45653 -11.35165 -11.08586 -11.05497 -10.99996 -10.88357 -10.63127 -10.48237 -9.85568 -9.53733 -8.16428 -6.27548 -0.02334 0.63481 1.43785 1.49252 1.50098 1.52394 1.57837 1.92812 1.99553 2.10682 2.46318 2.77557 2.89878 3.04806 3.14368 3.20062 3.33868 3.53962 3.71291 3.75549 3.88891 4.18462 4.23451 4.28384 4.35392 4.38315 4.45078 4.51875 4.52453 4.53914 4.58802 4.68354 4.69123 4.74511 4.81199 4.82837 4.89640 4.95697 4.97935 5.03808 5.07489 5.15763 5.59282 5.81205 6.23082 6.54203 6.80560 6.88817 6.94360 7.11690 7.19032 7.42525 8.93309 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.013705 B = 0.002335 C = 0.002193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2042.544388 B =11988.390629 C =12766.007482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.052 3.948 3 N -0.376 5.376 4 O 0.102 5.898 5 C 0.031 3.969 6 C -0.277 4.277 7 C 0.617 3.383 8 O -0.580 6.580 9 N -0.644 5.644 10 C 0.142 3.858 11 C -0.149 4.149 12 C -0.080 4.080 13 C -0.168 4.168 14 H 0.141 0.859 15 C 0.549 3.451 16 O -0.594 6.594 17 N -0.642 5.642 18 C 0.120 3.880 19 C 0.021 3.979 20 C -0.529 4.529 21 H 0.066 0.934 22 C 0.023 3.977 23 N -0.918 5.918 24 Si 0.957 3.043 25 H -0.265 1.265 26 H -0.287 1.287 27 H -0.275 1.275 28 C 0.103 3.897 29 C 0.131 3.869 30 H 0.085 0.915 31 H 0.095 0.905 32 H 0.082 0.918 33 H 0.273 0.727 34 H 0.149 0.851 35 H 0.109 0.891 36 H 0.099 0.901 37 H 0.158 0.842 38 H 0.085 0.915 39 H 0.064 0.936 40 H 0.034 0.966 41 H 0.265 0.735 42 H 0.046 0.954 43 H 0.085 0.915 44 H 0.059 0.941 45 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.309 7.319 -20.367 22.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.110 4.110 3 N -0.084 5.084 4 O 0.043 5.957 5 C -0.051 4.051 6 C -0.284 4.284 7 C 0.409 3.591 8 O -0.461 6.461 9 N -0.377 5.377 10 C 0.022 3.978 11 C -0.151 4.151 12 C -0.118 4.118 13 C -0.188 4.188 14 H 0.159 0.841 15 C 0.341 3.659 16 O -0.477 6.477 17 N -0.375 5.375 18 C -0.002 4.002 19 C 0.001 3.999 20 C -0.567 4.567 21 H 0.084 0.916 22 C -0.178 4.178 23 N -0.556 5.556 24 Si 0.783 3.217 25 H -0.189 1.189 26 H -0.213 1.213 27 H -0.200 1.200 28 C -0.020 4.020 29 C 0.010 3.990 30 H 0.103 0.897 31 H 0.113 0.887 32 H 0.101 0.899 33 H 0.288 0.712 34 H 0.167 0.833 35 H 0.127 0.873 36 H 0.118 0.882 37 H 0.176 0.824 38 H 0.103 0.897 39 H 0.082 0.918 40 H 0.052 0.948 41 H 0.074 0.926 42 H 0.065 0.935 43 H 0.103 0.897 44 H 0.078 0.922 45 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 3.831 8.692 -20.738 22.810 hybrid contribution -0.427 -1.402 1.352 1.994 sum 3.403 7.290 -19.386 20.989 Atomic orbital electron populations 1.20279 0.84483 1.04511 1.04153 1.25185 0.99809 0.86665 0.99385 1.73685 0.89840 1.23729 1.21132 1.84556 1.20796 1.23844 1.66480 1.27387 1.00758 0.82950 0.93972 1.22137 0.94482 0.93991 1.17836 1.16508 0.83618 0.83201 0.75817 1.90773 1.19723 1.82401 1.53179 1.49350 1.08827 1.07734 1.71825 1.23128 0.77736 0.93932 1.03011 1.21889 0.97190 0.99335 0.96652 1.23007 0.98506 0.97365 0.92922 1.22013 1.02530 1.03749 0.90526 0.84130 1.20039 0.86765 0.79990 0.79111 1.90599 1.26702 1.60476 1.69920 1.49981 1.23040 1.51352 1.13116 1.23343 0.90049 1.00752 0.86090 1.20262 0.93049 0.95218 0.91333 1.21168 1.32690 0.94946 1.07915 0.91610 1.25741 0.96212 0.95829 0.99997 1.70048 1.39297 1.10893 1.35337 0.85619 0.78502 0.78679 0.78920 1.18936 1.21258 1.20032 1.23217 0.97523 0.96548 0.84674 1.22661 0.95910 0.79401 1.01065 0.89666 0.88652 0.89901 0.71174 0.83340 0.87325 0.88210 0.82433 0.89654 0.91758 0.94816 0.92613 0.93503 0.89666 0.92237 0.86614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.67 10.15 71.24 0.72 -0.95 16 2 C 0.05 1.25 7.58 45.16 0.34 1.60 16 3 N -0.38 -8.69 12.01 -44.78 -0.54 -9.23 16 4 O 0.10 1.81 11.06 76.96 0.85 2.66 16 5 C 0.03 0.42 11.49 67.61 0.78 1.19 16 6 C -0.28 -6.23 6.46 -18.74 -0.12 -6.35 16 7 C 0.62 17.47 8.06 86.65 0.70 18.17 16 8 O -0.58 -21.76 16.46 -4.05 -0.07 -21.83 16 9 N -0.64 -14.24 3.69 -859.41 -3.17 -17.41 16 10 C 0.14 1.39 7.27 83.74 0.61 2.00 16 11 C -0.15 -2.60 3.15 -52.94 -0.17 -2.77 16 12 C -0.08 -1.11 10.24 30.37 0.31 -0.80 16 13 C -0.17 -3.93 6.02 -11.77 -0.07 -4.00 16 14 H 0.14 2.91 8.14 -2.39 -0.02 2.89 16 15 C 0.55 19.88 7.86 87.66 0.69 20.57 16 16 O -0.59 -25.59 15.03 -3.01 -0.05 -25.63 16 17 N -0.64 -24.90 3.69 -857.83 -3.16 -28.06 16 18 C 0.12 4.68 8.00 83.27 0.67 5.35 16 19 C 0.02 0.96 3.79 -11.12 -0.04 0.92 16 20 C -0.53 -26.32 8.83 25.60 0.23 -26.10 16 21 H 0.07 3.16 7.81 -2.91 -0.02 3.14 16 22 C 0.02 1.15 5.46 84.65 0.46 1.61 16 23 N -0.92 -49.11 13.26 21.45 0.28 -48.83 16 24 Si 0.96 39.87 29.54 68.60 2.03 41.89 16 25 H -0.26 -10.51 7.11 99.48 0.71 -9.80 16 26 H -0.29 -11.89 7.11 99.48 0.71 -11.18 16 27 H -0.27 -11.36 7.11 99.48 0.71 -10.66 16 28 C 0.10 4.28 8.17 83.17 0.68 4.96 16 29 C 0.13 3.11 8.20 83.64 0.69 3.80 16 30 H 0.08 1.81 8.14 -2.38 -0.02 1.79 16 31 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.08 2.01 7.10 -2.39 -0.02 1.99 16 33 H 0.27 0.53 5.53 -2.91 -0.02 0.51 16 34 H 0.15 0.21 8.14 -2.39 -0.02 0.19 16 35 H 0.11 0.50 6.32 -2.39 -0.02 0.48 16 36 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 37 H 0.16 0.85 8.14 -2.39 -0.02 0.83 16 38 H 0.09 3.17 8.10 -2.38 -0.02 3.15 16 39 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 40 H 0.03 1.78 8.11 -2.38 -0.02 1.76 16 41 H 0.26 13.53 8.31 -92.70 -0.77 12.76 16 42 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 43 H 0.09 3.32 8.10 -2.39 -0.02 3.30 16 44 H 0.06 2.07 5.98 -2.39 -0.01 2.05 16 45 H 0.12 2.08 8.14 -2.39 -0.02 2.06 16 Total: -1.00 -78.05 385.43 3.68 -74.37 By element: Atomic # 1 Polarization: 11.83 SS G_CDS: 1.03 Total: 12.86 kcal Atomic # 6 Polarization: 12.74 SS G_CDS: 6.47 Total: 19.20 kcal Atomic # 7 Polarization: -96.94 SS G_CDS: -6.59 Total: -103.53 kcal Atomic # 8 Polarization: -45.54 SS G_CDS: 0.74 Total: -44.80 kcal Atomic # 14 Polarization: 39.87 SS G_CDS: 2.03 Total: 41.89 kcal Total: -78.05 3.68 -74.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270027394.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.004 kcal (2) G-P(sol) polarization free energy of solvation -78.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.367 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds