Wall clock time and date at job start Wed Apr 1 2020 03:47:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.33698 * 126.27630 * 2 1 4 4 C 1.30612 * 108.99701 * 180.25438 * 3 2 1 5 5 O 1.33663 * 109.15314 * 359.76748 * 4 3 2 6 6 C 1.35343 * 107.68941 * 359.97438 * 5 4 3 7 7 C 1.46712 * 126.64596 * 179.97438 * 6 5 4 8 8 O 1.21692 * 120.00210 * 180.02562 * 7 6 5 9 9 N 1.34781 * 120.00120 * 0.02598 * 7 6 5 10 10 C 1.48110 * 127.04380 * 5.23093 * 9 7 6 11 11 C 1.54936 * 103.25998 * 140.77291 * 10 9 7 12 12 C 1.54577 * 102.85990 * 37.43012 * 11 10 9 13 13 H 1.08998 * 117.26988 * 116.74258 * 12 11 10 14 14 C 1.55075 * 118.28397 * 275.08978 * 12 11 10 15 15 C 1.47526 * 127.04327 * 185.23095 * 9 7 6 16 16 C 1.50706 * 117.37362 * 64.93663 * 15 9 7 17 17 O 1.21280 * 119.99830 * 217.04884 * 16 15 9 18 18 N 1.34775 * 119.99760 * 37.04381 * 16 15 9 19 19 C 1.47578 * 134.49054 * 174.99582 * 18 16 15 20 20 C 1.53950 * 86.11879 * 155.35837 * 19 18 16 21 21 C 1.50695 * 113.74196 * 137.95052 * 20 19 18 22 22 H 1.07999 * 120.00105 * 1.92914 * 21 20 19 23 23 C 1.37879 * 120.00103 * 181.65703 * 21 20 19 24 24 N 1.31519 * 119.99884 * 0.27091 * 23 21 20 25 25 Si 1.86796 * 120.00422 * 180.27721 * 23 21 20 26 26 H 1.48500 * 109.47089 * 89.99250 * 25 23 21 27 27 H 1.48497 * 109.47289 * 209.99690 * 25 23 21 28 28 H 1.48500 * 109.46770 * 329.99585 * 25 23 21 29 29 C 1.47812 * 134.45513 * 354.86481 * 18 16 15 30 30 H 1.09000 * 109.47223 * 270.13967 * 1 2 3 31 31 H 1.08996 * 109.46833 * 30.13938 * 1 2 3 32 32 H 1.09000 * 109.46952 * 150.13676 * 1 2 3 33 33 H 1.07999 * 125.42184 * 179.78728 * 4 3 2 34 34 H 1.09002 * 110.65930 * 259.21910 * 10 9 7 35 35 H 1.09002 * 110.66235 * 22.16165 * 10 9 7 36 36 H 1.08999 * 110.73864 * 155.77141 * 11 10 9 37 37 H 1.09002 * 110.73403 * 278.90822 * 11 10 9 38 38 H 1.09001 * 117.30624 * 343.82057 * 14 12 11 39 39 H 1.08997 * 117.88708 * 198.59128 * 14 12 11 40 40 H 1.09004 * 113.76918 * 41.06086 * 19 18 16 41 41 H 1.08998 * 113.87451 * 269.67210 * 19 18 16 42 42 H 1.08996 * 113.74330 * 269.15756 * 20 19 18 43 43 H 0.96999 * 120.00489 * 180.02562 * 24 23 21 44 44 H 1.09000 * 113.76891 * 90.38596 * 29 18 16 45 45 H 1.08991 * 113.83909 * 318.91474 * 29 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2981 1.0778 0.0000 4 6 3.5452 0.6899 -0.0055 5 8 3.5889 -0.6460 -0.0040 6 6 2.3137 -1.0992 0.0032 7 6 1.8827 -2.5016 0.0067 8 8 0.6966 -2.7737 0.0129 9 7 2.8005 -3.4887 0.0031 10 6 4.2707 -3.3404 0.1035 11 6 4.6859 -4.5232 1.0140 12 6 3.7372 -5.6562 0.5602 13 1 4.1928 -6.5409 0.1155 14 6 2.3223 -5.7267 1.1911 15 6 2.5463 -4.9381 -0.1015 16 6 1.9446 -5.4451 -1.3869 17 8 1.1330 -6.3460 -1.3626 18 7 2.3083 -4.8971 -2.5633 19 6 2.0083 -5.1915 -3.9780 20 6 2.3302 -3.7100 -4.2458 21 6 3.1492 -3.4824 -5.4901 22 1 3.4263 -4.3187 -6.1147 23 6 3.5401 -2.2057 -5.8341 24 7 3.2027 -1.1873 -5.0735 25 14 4.5488 -1.9226 -7.3806 26 1 3.6379 -1.6861 -8.5293 27 1 5.4241 -0.7381 -7.1908 28 1 5.3864 -3.1187 -7.6511 29 6 3.1660 -3.7584 -2.9538 30 1 -0.3634 0.0025 1.0277 31 1 -0.3633 0.8887 -0.5160 32 1 -0.3633 -0.8912 -0.5117 33 1 4.4043 1.3443 -0.0101 34 1 4.7342 -3.4301 -0.8790 35 1 4.5306 -2.3874 0.5643 36 1 5.7261 -4.7980 0.8396 37 1 4.5238 -4.2777 2.0636 38 1 2.1532 -5.1566 2.1046 39 1 1.7777 -6.6680 1.1177 40 1 0.9664 -5.4547 -4.1606 41 1 2.7097 -5.8844 -4.4427 42 1 1.4621 -3.0540 -4.1825 43 1 3.4774 -0.2890 -5.3157 44 1 4.2093 -4.0294 -3.1154 45 1 3.0467 -2.8795 -2.3203 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001270035446.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:47:20 Heat of formation + Delta-G solvation = 41.322930 kcal Electronic energy + Delta-G solvation = -32078.988989 eV Core-core repulsion = 27873.412490 eV Total energy + Delta-G solvation = -4205.576499 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -43.38999 -40.85088 -38.85575 -38.07897 -36.82471 -35.29841 -33.17557 -32.68671 -31.44039 -30.65809 -29.19557 -27.83731 -25.64789 -25.18590 -24.44673 -23.51608 -22.91686 -21.79334 -21.12918 -20.34511 -19.63368 -18.38075 -17.35600 -16.94488 -16.88033 -16.60711 -16.31347 -15.97065 -15.33117 -14.77752 -14.64832 -14.57183 -14.30389 -14.18568 -13.70093 -13.52697 -13.18664 -13.02381 -12.80210 -12.67014 -12.47230 -12.17384 -12.10708 -12.03609 -11.64680 -11.34268 -11.23343 -11.05271 -11.01834 -10.91070 -10.80957 -10.67305 -10.50546 -10.38195 -9.99033 -9.61996 -9.32573 -9.18914 -8.91949 -8.65169 -8.50038 -7.88872 -6.20547 -4.26925 0.88408 2.28115 2.47983 2.66814 3.02098 3.14895 3.20304 3.27881 3.29661 3.37582 3.69540 4.05193 4.29676 4.34686 4.39892 4.61748 4.78246 4.80381 4.92161 5.01766 5.08227 5.10019 5.37178 5.45715 5.47942 5.60045 5.62619 5.72177 5.73916 5.78954 5.92728 6.01885 6.03533 6.05727 6.13905 6.19725 6.23773 6.36656 6.39128 6.49888 6.62267 6.76727 7.31835 7.52294 7.59233 7.75967 8.01318 8.13070 8.43514 8.70316 8.76135 9.39777 10.88452 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.008311 B = 0.005526 C = 0.004052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3368.309188 B = 5065.565139 C = 6909.287226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.086 3.914 3 N -0.493 5.493 4 C 0.203 3.797 5 O -0.187 6.187 6 C -0.104 4.104 7 C 0.631 3.369 8 O -0.500 6.500 9 N -0.579 5.579 10 C 0.096 3.904 11 C -0.104 4.104 12 C -0.139 4.139 13 H 0.129 0.871 14 C -0.114 4.114 15 C 0.065 3.935 16 C 0.566 3.434 17 O -0.554 6.554 18 N -0.629 5.629 19 C 0.104 3.896 20 C 0.035 3.965 21 C -0.520 4.520 22 H 0.063 0.937 23 C 0.069 3.931 24 N -0.883 5.883 25 Si 0.894 3.106 26 H -0.279 1.279 27 H -0.286 1.286 28 H -0.272 1.272 29 C 0.111 3.889 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.095 0.905 33 H 0.254 0.746 34 H 0.085 0.915 35 H 0.094 0.906 36 H 0.093 0.907 37 H 0.079 0.921 38 H 0.103 0.897 39 H 0.120 0.880 40 H 0.062 0.938 41 H 0.076 0.924 42 H 0.061 0.939 43 H 0.263 0.737 44 H 0.072 0.928 45 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.881 0.255 14.200 15.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.038 4.038 3 N -0.222 5.222 4 C -0.022 4.022 5 O -0.074 6.074 6 C -0.159 4.159 7 C 0.420 3.580 8 O -0.375 6.375 9 N -0.313 5.313 10 C -0.026 4.026 11 C -0.142 4.142 12 C -0.158 4.158 13 H 0.147 0.853 14 C -0.152 4.152 15 C -0.024 4.024 16 C 0.353 3.647 17 O -0.433 6.433 18 N -0.361 5.361 19 C -0.018 4.018 20 C 0.016 3.984 21 C -0.558 4.558 22 H 0.081 0.919 23 C -0.135 4.135 24 N -0.520 5.520 25 Si 0.721 3.279 26 H -0.205 1.205 27 H -0.212 1.212 28 H -0.197 1.197 29 C -0.011 4.011 30 H 0.097 0.903 31 H 0.097 0.903 32 H 0.114 0.886 33 H 0.270 0.730 34 H 0.104 0.896 35 H 0.112 0.888 36 H 0.111 0.889 37 H 0.098 0.902 38 H 0.121 0.879 39 H 0.138 0.862 40 H 0.080 0.920 41 H 0.094 0.906 42 H 0.080 0.920 43 H 0.073 0.927 44 H 0.090 0.910 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 4.569 0.450 14.375 15.090 hybrid contribution 1.166 -0.070 -0.975 1.522 sum 5.734 0.380 13.399 14.580 Atomic orbital electron populations 1.20388 0.85456 1.04720 1.03274 1.21982 0.98305 0.86263 0.97264 1.70330 1.01324 1.31362 1.19177 1.28259 0.97595 0.79646 0.96724 1.84534 1.29460 1.24212 1.69152 1.22583 0.81561 0.95496 1.16295 1.15894 0.84714 0.80732 0.76704 1.90892 1.15183 1.81424 1.50051 1.48003 1.07090 1.03737 1.72484 1.22997 0.78879 0.99670 1.01020 1.22406 0.99259 0.92730 0.99823 1.24146 0.88970 0.99826 1.02884 0.85339 1.23724 0.95325 1.01611 0.94550 1.21655 1.06401 0.80003 0.94384 1.18833 0.81610 0.81557 0.82741 1.90640 1.34142 1.31910 1.86619 1.50352 1.48085 1.32818 1.04841 1.23523 0.99924 1.01109 0.77233 1.20481 0.95826 0.89495 0.92629 1.20949 1.33720 0.93180 1.07922 0.91850 1.25017 0.95764 0.95996 0.96684 1.69968 1.45073 0.99213 1.37733 0.86562 0.80126 0.77832 0.83332 1.20464 1.21179 1.19722 1.23729 0.95002 0.85406 0.96998 0.90255 0.90334 0.88606 0.72996 0.89634 0.88768 0.88890 0.90197 0.87913 0.86211 0.91951 0.90580 0.92049 0.92736 0.90971 0.92247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.19 9.87 36.00 0.36 -0.84 16 2 C 0.09 1.40 7.16 -82.46 -0.59 0.81 16 3 N -0.49 -7.42 11.26 -10.88 -0.12 -7.54 16 4 C 0.20 2.42 13.21 52.24 0.69 3.11 16 5 O -0.19 -2.61 8.05 4.43 0.04 -2.58 16 6 C -0.10 -1.74 6.98 -36.84 -0.26 -2.00 16 7 C 0.63 11.50 7.02 -12.84 -0.09 11.41 16 8 O -0.50 -10.44 15.21 5.20 0.08 -10.36 16 9 N -0.58 -9.29 1.77 -157.79 -0.28 -9.57 16 10 C 0.10 1.19 6.14 -2.13 -0.01 1.17 16 11 C -0.10 -0.99 6.88 -24.88 -0.17 -1.16 16 12 C -0.14 -1.66 7.01 -88.17 -0.62 -2.28 16 13 H 0.13 1.41 8.14 -51.93 -0.42 0.99 16 14 C -0.11 -1.52 9.92 -25.60 -0.25 -1.77 16 15 C 0.06 1.07 2.25 -131.85 -0.30 0.77 16 16 C 0.57 11.82 7.91 -10.98 -0.09 11.73 16 17 O -0.55 -12.98 17.24 5.56 0.10 -12.88 16 18 N -0.63 -13.41 3.61 -178.19 -0.64 -14.05 16 19 C 0.10 2.23 8.40 -2.97 -0.02 2.21 16 20 C 0.03 0.84 3.60 -90.84 -0.33 0.51 16 21 C -0.52 -13.23 8.77 -34.44 -0.30 -13.53 16 22 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 23 C 0.07 1.78 5.46 -17.82 -0.10 1.69 16 24 N -0.88 -23.93 13.29 55.43 0.74 -23.19 16 25 Si 0.89 19.94 29.54 -169.99 -5.02 14.91 16 26 H -0.28 -6.26 7.11 56.52 0.40 -5.85 16 27 H -0.29 -6.35 7.11 56.52 0.40 -5.95 16 28 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 29 C 0.11 2.39 6.50 -2.83 -0.02 2.37 16 30 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.10 1.59 6.47 -51.93 -0.34 1.25 16 33 H 0.25 1.55 8.06 -52.49 -0.42 1.13 16 34 H 0.09 1.14 6.91 -51.93 -0.36 0.78 16 35 H 0.09 1.05 5.80 -51.93 -0.30 0.75 16 36 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 38 H 0.10 1.24 8.14 -51.93 -0.42 0.81 16 39 H 0.12 1.62 7.87 -51.93 -0.41 1.22 16 40 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 41 H 0.08 1.53 8.09 -51.93 -0.42 1.11 16 42 H 0.06 1.67 8.14 -51.93 -0.42 1.24 16 43 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 44 H 0.07 1.50 8.08 -51.93 -0.42 1.08 16 45 H 0.06 1.33 5.98 -51.93 -0.31 1.02 16 LS Contribution 376.88 15.07 5.68 5.68 Total: -1.00 -33.62 376.88 -7.45 -41.07 By element: Atomic # 1 Polarization: 10.21 SS G_CDS: -5.91 Total: 4.30 kcal Atomic # 6 Polarization: 16.31 SS G_CDS: -2.10 Total: 14.21 kcal Atomic # 7 Polarization: -54.04 SS G_CDS: -0.31 Total: -54.35 kcal Atomic # 8 Polarization: -26.03 SS G_CDS: 0.21 Total: -25.82 kcal Atomic # 14 Polarization: 19.94 SS G_CDS: -5.02 Total: 14.91 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -33.62 -7.45 -41.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270035446.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.390 kcal (2) G-P(sol) polarization free energy of solvation -33.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.067 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds