Wall clock time and date at job start Wed Apr 1 2020 03:47:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.33698 * 126.27630 * 2 1 4 4 C 1.30612 * 108.99701 * 180.25438 * 3 2 1 5 5 O 1.33663 * 109.15314 * 359.76748 * 4 3 2 6 6 C 1.35343 * 107.68941 * 359.97438 * 5 4 3 7 7 C 1.46712 * 126.64596 * 179.97438 * 6 5 4 8 8 O 1.21692 * 120.00210 * 180.02562 * 7 6 5 9 9 N 1.34781 * 120.00120 * 0.02598 * 7 6 5 10 10 C 1.48110 * 127.04380 * 5.23093 * 9 7 6 11 11 C 1.54936 * 103.25998 * 140.77291 * 10 9 7 12 12 C 1.54577 * 102.85990 * 37.43012 * 11 10 9 13 13 H 1.08998 * 117.26988 * 116.74258 * 12 11 10 14 14 C 1.55075 * 118.28397 * 275.08978 * 12 11 10 15 15 C 1.47526 * 127.04327 * 185.23095 * 9 7 6 16 16 C 1.50706 * 117.37362 * 64.93663 * 15 9 7 17 17 O 1.21280 * 119.99830 * 217.04884 * 16 15 9 18 18 N 1.34775 * 119.99760 * 37.04381 * 16 15 9 19 19 C 1.47578 * 134.49054 * 174.99582 * 18 16 15 20 20 C 1.53950 * 86.11879 * 155.35837 * 19 18 16 21 21 C 1.50695 * 113.74196 * 137.95052 * 20 19 18 22 22 H 1.07999 * 120.00105 * 1.92914 * 21 20 19 23 23 C 1.37879 * 120.00103 * 181.65703 * 21 20 19 24 24 N 1.31519 * 119.99884 * 0.27091 * 23 21 20 25 25 Si 1.86796 * 120.00422 * 180.27721 * 23 21 20 26 26 H 1.48500 * 109.47089 * 89.99250 * 25 23 21 27 27 H 1.48497 * 109.47289 * 209.99690 * 25 23 21 28 28 H 1.48500 * 109.46770 * 329.99585 * 25 23 21 29 29 C 1.47812 * 134.45513 * 354.86481 * 18 16 15 30 30 H 1.09000 * 109.47223 * 270.13967 * 1 2 3 31 31 H 1.08996 * 109.46833 * 30.13938 * 1 2 3 32 32 H 1.09000 * 109.46952 * 150.13676 * 1 2 3 33 33 H 1.07999 * 125.42184 * 179.78728 * 4 3 2 34 34 H 1.09002 * 110.65930 * 259.21910 * 10 9 7 35 35 H 1.09002 * 110.66235 * 22.16165 * 10 9 7 36 36 H 1.08999 * 110.73864 * 155.77141 * 11 10 9 37 37 H 1.09002 * 110.73403 * 278.90822 * 11 10 9 38 38 H 1.09001 * 117.30624 * 343.82057 * 14 12 11 39 39 H 1.08997 * 117.88708 * 198.59128 * 14 12 11 40 40 H 1.09004 * 113.76918 * 41.06086 * 19 18 16 41 41 H 1.08998 * 113.87451 * 269.67210 * 19 18 16 42 42 H 1.08996 * 113.74330 * 269.15756 * 20 19 18 43 43 H 0.96999 * 120.00489 * 180.02562 * 24 23 21 44 44 H 1.09000 * 113.76891 * 90.38596 * 29 18 16 45 45 H 1.08991 * 113.83909 * 318.91474 * 29 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2981 1.0778 0.0000 4 6 3.5452 0.6899 -0.0055 5 8 3.5889 -0.6460 -0.0040 6 6 2.3137 -1.0992 0.0032 7 6 1.8827 -2.5016 0.0067 8 8 0.6966 -2.7737 0.0129 9 7 2.8005 -3.4887 0.0031 10 6 4.2707 -3.3404 0.1035 11 6 4.6859 -4.5232 1.0140 12 6 3.7372 -5.6562 0.5602 13 1 4.1928 -6.5409 0.1155 14 6 2.3223 -5.7267 1.1911 15 6 2.5463 -4.9381 -0.1015 16 6 1.9446 -5.4451 -1.3869 17 8 1.1330 -6.3460 -1.3626 18 7 2.3083 -4.8971 -2.5633 19 6 2.0083 -5.1915 -3.9780 20 6 2.3302 -3.7100 -4.2458 21 6 3.1492 -3.4824 -5.4901 22 1 3.4263 -4.3187 -6.1147 23 6 3.5401 -2.2057 -5.8341 24 7 3.2027 -1.1873 -5.0735 25 14 4.5488 -1.9226 -7.3806 26 1 3.6379 -1.6861 -8.5293 27 1 5.4241 -0.7381 -7.1908 28 1 5.3864 -3.1187 -7.6511 29 6 3.1660 -3.7584 -2.9538 30 1 -0.3634 0.0025 1.0277 31 1 -0.3633 0.8887 -0.5160 32 1 -0.3633 -0.8912 -0.5117 33 1 4.4043 1.3443 -0.0101 34 1 4.7342 -3.4301 -0.8790 35 1 4.5306 -2.3874 0.5643 36 1 5.7261 -4.7980 0.8396 37 1 4.5238 -4.2777 2.0636 38 1 2.1532 -5.1566 2.1046 39 1 1.7777 -6.6680 1.1177 40 1 0.9664 -5.4547 -4.1606 41 1 2.7097 -5.8844 -4.4427 42 1 1.4621 -3.0540 -4.1825 43 1 3.4774 -0.2890 -5.3157 44 1 4.2093 -4.0294 -3.1154 45 1 3.0467 -2.8795 -2.3203 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001270035446.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:47:19 Heat of formation + Delta-G solvation = 17.632316 kcal Electronic energy + Delta-G solvation = -32080.016291 eV Core-core repulsion = 27873.412490 eV Total energy + Delta-G solvation = -4206.603801 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -44.49790 -42.12900 -40.45849 -39.45760 -38.48746 -36.42830 -34.68963 -34.33420 -32.58509 -31.76777 -30.88382 -29.03924 -27.42514 -27.00057 -25.65708 -24.57155 -24.16444 -23.12179 -22.28970 -21.44229 -21.28729 -19.75476 -18.92626 -18.56902 -18.14701 -17.96583 -17.54273 -17.21927 -16.80777 -16.59795 -16.20491 -15.78779 -15.67012 -15.40479 -15.13606 -14.74487 -14.40923 -14.30794 -14.15878 -13.97900 -13.80126 -13.69511 -13.41893 -13.32192 -13.22428 -12.99898 -12.82297 -12.69147 -12.27060 -12.22287 -12.17194 -11.99187 -11.93933 -11.56888 -11.39808 -11.22564 -11.18475 -10.76083 -10.58839 -10.19487 -9.79755 -9.62974 -8.18587 -6.31848 -0.29009 1.03089 1.35809 1.39278 1.44653 1.47291 1.56478 1.77243 1.87435 1.89192 2.41543 2.45881 3.10506 3.11345 3.22548 3.35111 3.40644 3.61818 3.64432 3.78638 4.10404 4.16784 4.21915 4.30530 4.33742 4.36072 4.41283 4.49117 4.56102 4.57752 4.59321 4.68425 4.72051 4.73952 4.79612 4.86969 4.93387 4.98285 4.98640 5.10861 5.22002 5.27604 5.50936 5.74776 6.11038 6.15409 6.46655 6.71658 6.74092 6.76253 7.03874 7.38388 8.90534 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.008311 B = 0.005526 C = 0.004052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3368.309188 B = 5065.565139 C = 6909.287226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.074 3.926 3 N -0.522 5.522 4 C 0.230 3.770 5 O -0.185 6.185 6 C -0.129 4.129 7 C 0.621 3.379 8 O -0.546 6.546 9 N -0.574 5.574 10 C 0.089 3.911 11 C -0.090 4.090 12 C -0.099 4.099 13 H 0.144 0.856 14 C -0.107 4.107 15 C 0.019 3.981 16 C 0.558 3.442 17 O -0.589 6.589 18 N -0.633 5.633 19 C 0.108 3.892 20 C 0.023 3.977 21 C -0.530 4.530 22 H 0.069 0.931 23 C 0.024 3.976 24 N -0.915 5.915 25 Si 0.960 3.040 26 H -0.281 1.281 27 H -0.282 1.282 28 H -0.261 1.261 29 C 0.136 3.864 30 H 0.097 0.903 31 H 0.087 0.913 32 H 0.069 0.931 33 H 0.311 0.689 34 H 0.075 0.925 35 H 0.108 0.892 36 H 0.128 0.872 37 H 0.100 0.900 38 H 0.117 0.883 39 H 0.113 0.887 40 H 0.055 0.945 41 H 0.096 0.904 42 H 0.017 0.983 43 H 0.263 0.737 44 H 0.085 0.915 45 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.469 0.388 15.179 17.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.050 4.050 3 N -0.251 5.251 4 C 0.005 3.995 5 O -0.071 6.071 6 C -0.184 4.184 7 C 0.411 3.589 8 O -0.425 6.425 9 N -0.307 5.307 10 C -0.032 4.032 11 C -0.128 4.128 12 C -0.118 4.118 13 H 0.162 0.838 14 C -0.145 4.145 15 C -0.070 4.070 16 C 0.347 3.653 17 O -0.470 6.470 18 N -0.366 5.366 19 C -0.014 4.014 20 C 0.004 3.996 21 C -0.568 4.568 22 H 0.087 0.913 23 C -0.177 4.177 24 N -0.553 5.553 25 Si 0.785 3.215 26 H -0.207 1.207 27 H -0.208 1.208 28 H -0.185 1.185 29 C 0.014 3.986 30 H 0.115 0.885 31 H 0.106 0.894 32 H 0.088 0.912 33 H 0.325 0.675 34 H 0.093 0.907 35 H 0.126 0.874 36 H 0.146 0.854 37 H 0.119 0.881 38 H 0.135 0.865 39 H 0.131 0.869 40 H 0.073 0.927 41 H 0.114 0.886 42 H 0.035 0.965 43 H 0.072 0.928 44 H 0.103 0.897 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 8.195 0.568 15.364 17.422 hybrid contribution 0.024 -0.064 -1.300 1.302 sum 8.219 0.504 14.064 16.298 Atomic orbital electron populations 1.20349 0.85312 1.03734 1.04166 1.22257 0.98977 0.86901 0.96822 1.70353 1.02531 1.31082 1.21089 1.29599 0.98232 0.79241 0.92407 1.84526 1.28072 1.25160 1.69391 1.22313 0.82640 0.94919 1.18566 1.16207 0.84604 0.81761 0.76356 1.90849 1.16989 1.82326 1.52358 1.48095 1.08354 1.03102 1.71113 1.23251 0.76551 1.01902 1.01457 1.22505 1.00240 0.89876 1.00132 1.24466 0.88028 1.00018 0.99257 0.83815 1.23807 0.96735 1.00667 0.93337 1.21669 1.11009 0.80957 0.93403 1.19640 0.80889 0.80960 0.83798 1.90601 1.35520 1.33607 1.87311 1.50361 1.48217 1.32872 1.05101 1.23440 1.00064 0.99786 0.78103 1.20356 0.94882 0.90351 0.94005 1.21210 1.33616 0.93623 1.08386 0.91261 1.25769 0.96757 0.95674 0.99505 1.70100 1.46220 0.99536 1.39419 0.85532 0.78589 0.78056 0.79342 1.20745 1.20769 1.18509 1.23377 0.95042 0.85135 0.95010 0.88462 0.89441 0.91237 0.67491 0.90657 0.87370 0.85353 0.88132 0.86470 0.86857 0.92685 0.88615 0.96483 0.92788 0.89670 0.93401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.44 9.87 71.24 0.70 -1.73 16 2 C 0.07 2.46 7.16 41.83 0.30 2.76 16 3 N -0.52 -15.19 11.26 -303.13 -3.41 -18.61 16 4 C 0.23 4.91 13.21 130.42 1.72 6.63 16 5 O -0.18 -4.87 8.05 -7.07 -0.06 -4.93 16 6 C -0.13 -4.36 6.98 24.04 0.17 -4.19 16 7 C 0.62 23.41 7.02 86.46 0.61 24.01 16 8 O -0.55 -24.33 15.21 -4.32 -0.07 -24.39 16 9 N -0.57 -18.22 1.77 -771.34 -1.37 -19.59 16 10 C 0.09 1.99 6.14 86.73 0.53 2.52 16 11 C -0.09 -1.31 6.88 31.79 0.22 -1.09 16 12 C -0.10 -2.06 7.01 -9.21 -0.06 -2.12 16 13 H 0.14 2.61 8.14 -2.39 -0.02 2.59 16 14 C -0.11 -2.72 9.92 31.33 0.31 -2.41 16 15 C 0.02 0.61 2.25 3.02 0.01 0.62 16 16 C 0.56 23.80 7.91 87.66 0.69 24.49 16 17 O -0.59 -28.45 17.24 -3.03 -0.05 -28.51 16 18 N -0.63 -27.66 3.61 -836.07 -3.02 -30.68 16 19 C 0.11 4.77 8.40 86.49 0.73 5.50 16 20 C 0.02 1.17 3.60 -10.88 -0.04 1.13 16 21 C -0.53 -27.19 8.77 25.60 0.22 -26.96 16 22 H 0.07 3.40 7.81 -2.91 -0.02 3.38 16 23 C 0.02 1.21 5.46 84.65 0.46 1.68 16 24 N -0.92 -50.26 13.29 21.45 0.28 -49.97 16 25 Si 0.96 40.44 29.54 68.60 2.03 42.47 16 26 H -0.28 -11.92 7.11 99.48 0.71 -11.22 16 27 H -0.28 -11.64 7.11 99.48 0.71 -10.94 16 28 H -0.26 -10.45 7.11 99.48 0.71 -9.74 16 29 C 0.14 5.98 6.50 86.44 0.56 6.54 16 30 H 0.10 2.57 8.14 -2.39 -0.02 2.55 16 31 H 0.09 2.46 8.14 -2.39 -0.02 2.44 16 32 H 0.07 2.52 6.47 -2.39 -0.02 2.51 16 33 H 0.31 2.34 8.06 -2.91 -0.02 2.32 16 34 H 0.08 1.85 6.91 -2.39 -0.02 1.84 16 35 H 0.11 2.11 5.80 -2.39 -0.01 2.10 16 36 H 0.13 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 38 H 0.12 2.61 8.14 -2.39 -0.02 2.59 16 39 H 0.11 3.01 7.87 -2.39 -0.02 3.00 16 40 H 0.05 2.47 8.14 -2.38 -0.02 2.45 16 41 H 0.10 3.84 8.09 -2.39 -0.02 3.82 16 42 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 43 H 0.26 13.77 8.31 -92.71 -0.77 13.00 16 44 H 0.09 3.50 8.08 -2.39 -0.02 3.48 16 45 H 0.05 2.20 5.98 -2.39 -0.01 2.19 16 Total: -1.00 -77.83 376.88 2.50 -75.33 By element: Atomic # 1 Polarization: 20.49 SS G_CDS: 1.03 Total: 21.53 kcal Atomic # 6 Polarization: 30.22 SS G_CDS: 7.13 Total: 37.35 kcal Atomic # 7 Polarization: -111.34 SS G_CDS: -7.52 Total: -118.86 kcal Atomic # 8 Polarization: -57.65 SS G_CDS: -0.17 Total: -57.82 kcal Atomic # 14 Polarization: 40.44 SS G_CDS: 2.03 Total: 42.47 kcal Total: -77.83 2.50 -75.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270035446.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.963 kcal (2) G-P(sol) polarization free energy of solvation -77.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.331 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds