Wall clock time and date at job start Wed Apr 1 2020 03:47:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 N 1.33688 * 126.27346 * 2 1 4 4 C 1.30622 * 108.99485 * 179.97438 * 3 2 1 5 5 O 1.33665 * 109.15243 * 359.73002 * 4 3 2 6 6 C 1.35342 * 107.68509 * 0.43310 * 5 4 3 7 7 C 1.46725 * 126.64417 * 179.84018 * 6 5 4 8 8 O 1.21685 * 120.00204 * 179.68770 * 7 6 5 9 9 N 1.34778 * 120.00047 * 359.69098 * 7 6 5 10 10 C 1.49869 * 127.93327 * 3.87464 * 9 7 6 11 11 C 1.54942 * 103.40284 * 219.94060 * 10 9 7 12 12 C 1.54573 * 102.85799 * 322.44811 * 11 10 9 13 13 H 1.09009 * 118.12429 * 242.39164 * 12 11 10 14 14 C 1.52938 * 118.20383 * 85.42827 * 12 11 10 15 15 C 1.47527 * 127.04527 * 184.70250 * 9 7 6 16 16 C 1.50698 * 117.36447 * 295.05725 * 15 9 7 17 17 O 1.21287 * 119.99532 * 172.87102 * 16 15 9 18 18 N 1.34771 * 120.00676 * 352.86776 * 16 15 9 19 19 C 1.47582 * 134.49871 * 174.70225 * 18 16 15 20 20 C 1.53940 * 86.11940 * 155.36615 * 19 18 16 21 21 C 1.50701 * 113.74365 * 137.95478 * 20 19 18 22 22 H 1.08001 * 119.99460 * 0.02562 * 21 20 19 23 23 C 1.37879 * 119.99895 * 180.02562 * 21 20 19 24 24 N 1.31508 * 120.00139 * 0.02562 * 23 21 20 25 25 Si 1.86797 * 119.99627 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.47609 * 59.99797 * 25 23 21 27 27 H 1.48501 * 109.46994 * 299.99576 * 25 23 21 28 28 H 1.48496 * 109.47135 * 180.02562 * 25 23 21 29 29 C 1.47587 * 134.48907 * 354.71434 * 18 16 15 30 30 H 1.09000 * 109.47154 * 270.04376 * 1 2 3 31 31 H 1.09002 * 109.46514 * 30.04303 * 1 2 3 32 32 H 1.08998 * 109.46876 * 150.04079 * 1 2 3 33 33 H 1.07999 * 125.42367 * 179.97438 * 4 3 2 34 34 H 1.09003 * 110.69878 * 101.39733 * 10 9 7 35 35 H 1.09008 * 110.62942 * 338.44660 * 10 9 7 36 36 H 1.08999 * 110.73577 * 204.10473 * 11 10 9 37 37 H 1.08999 * 110.89024 * 80.86337 * 11 10 9 38 38 H 1.08996 * 117.45727 * 160.77062 * 14 12 11 39 39 H 1.09000 * 117.44740 * 15.99320 * 14 12 11 40 40 H 1.09003 * 113.76391 * 41.06219 * 19 18 16 41 41 H 1.09004 * 113.77052 * 269.67057 * 19 18 16 42 42 H 1.09005 * 113.74112 * 269.15796 * 20 19 18 43 43 H 0.96998 * 120.00130 * 0.02562 * 24 23 21 44 44 H 1.08993 * 113.77007 * 90.33392 * 29 18 16 45 45 H 1.09000 * 113.76675 * 318.93330 * 29 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2980 1.0778 0.0000 4 6 3.5453 0.6898 0.0006 5 8 3.5890 -0.6461 0.0069 6 6 2.3137 -1.0992 0.0006 7 6 1.8827 -2.5017 0.0009 8 8 0.6966 -2.7738 0.0005 9 7 2.8004 -3.4888 0.0015 10 6 4.2914 -3.3604 0.0820 11 6 4.7986 -4.4356 -0.9117 12 6 3.7992 -5.5961 -0.7026 13 1 4.1851 -6.5463 -0.3331 14 6 2.4870 -5.5702 -1.4877 15 6 2.5462 -4.9388 -0.0947 16 6 1.7962 -5.5873 1.0402 17 8 1.4479 -6.7459 0.9531 18 7 1.5126 -4.8802 2.1519 19 6 0.7357 -5.1477 3.3778 20 6 1.6261 -4.0859 4.0483 21 6 0.8732 -3.1484 4.9567 22 1 -0.1931 -3.2615 5.0854 23 6 1.5457 -2.1462 5.6234 24 7 2.8440 -2.0081 5.4662 25 14 0.6124 -0.9845 6.7499 26 1 -0.0384 -1.7628 7.8343 27 1 -0.4236 -0.2629 5.9681 28 1 1.5572 -0.0039 7.3422 29 6 1.8540 -3.5270 2.6321 30 1 -0.3633 0.0008 1.0277 31 1 -0.3632 0.8896 -0.5145 32 1 -0.3633 -0.8903 -0.5132 33 1 4.4044 1.3443 0.0003 34 1 4.6425 -3.5737 1.0917 35 1 4.6088 -2.3661 -0.2322 36 1 5.8116 -4.7482 -0.6582 37 1 4.7548 -4.0686 -1.9371 38 1 1.9445 -6.5099 -1.5909 39 1 2.4262 -4.8967 -2.3425 40 1 0.8752 -6.1529 3.7757 41 1 -0.3130 -4.8593 3.3051 42 1 2.5247 -4.4950 4.5103 43 1 3.3285 -2.6111 4.8810 44 1 1.1339 -2.7627 2.3404 45 1 2.8863 -3.2383 2.4345 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001270035449.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:47:24 Heat of formation + Delta-G solvation = 40.160909 kcal Electronic energy + Delta-G solvation = -32328.327021 eV Core-core repulsion = 28122.700133 eV Total energy + Delta-G solvation = -4205.626888 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -43.48951 -40.96376 -38.83870 -38.37044 -36.85643 -35.39412 -33.22760 -32.82883 -31.52231 -30.77582 -29.04474 -27.87756 -25.43344 -25.15836 -24.43558 -23.54448 -23.01552 -21.88273 -21.16028 -20.43413 -19.96496 -18.50768 -17.51684 -17.13925 -16.89841 -16.75232 -16.35632 -15.98960 -15.37511 -14.84911 -14.72873 -14.53746 -14.33383 -13.89940 -13.75893 -13.61380 -13.43278 -13.21734 -12.88314 -12.82387 -12.57539 -12.19384 -12.15851 -11.98549 -11.62955 -11.47227 -11.27557 -11.12836 -11.00575 -10.89614 -10.76669 -10.68081 -10.55878 -10.18116 -10.04734 -9.68706 -9.56425 -9.06087 -8.80238 -8.56830 -8.45245 -7.93626 -6.52037 -4.23926 0.79158 2.23282 2.39056 2.58536 2.82740 3.06059 3.34744 3.38933 3.39782 3.57539 3.68990 3.96170 4.26418 4.33654 4.43152 4.51601 4.70023 4.77579 4.85624 4.93188 5.00927 5.17752 5.26587 5.35296 5.39196 5.53796 5.56472 5.62524 5.69398 5.75108 5.85514 5.86940 5.96805 5.98866 6.02674 6.05768 6.21013 6.25374 6.32155 6.40966 6.47028 6.62978 7.24010 7.27826 7.50130 7.94538 7.98705 8.27802 8.36447 8.61342 8.71599 9.48094 10.87006 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.008548 B = 0.005855 C = 0.004164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3274.863142 B = 4780.883228 C = 6723.365277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.087 3.913 3 N -0.491 5.491 4 C 0.201 3.799 5 O -0.190 6.190 6 C -0.109 4.109 7 C 0.634 3.366 8 O -0.496 6.496 9 N -0.586 5.586 10 C 0.098 3.902 11 C -0.105 4.105 12 C -0.129 4.129 13 H 0.131 0.869 14 C -0.115 4.115 15 C 0.056 3.944 16 C 0.569 3.431 17 O -0.561 6.561 18 N -0.622 5.622 19 C 0.115 3.885 20 C 0.013 3.987 21 C -0.592 4.592 22 H 0.056 0.944 23 C 0.026 3.974 24 N -0.903 5.903 25 Si 1.066 2.934 26 H -0.285 1.285 27 H -0.286 1.286 28 H -0.282 1.282 29 C 0.104 3.896 30 H 0.088 0.912 31 H 0.076 0.924 32 H 0.093 0.907 33 H 0.255 0.745 34 H 0.084 0.916 35 H 0.097 0.903 36 H 0.094 0.906 37 H 0.081 0.919 38 H 0.120 0.880 39 H 0.102 0.898 40 H 0.063 0.937 41 H 0.077 0.923 42 H 0.053 0.947 43 H 0.267 0.733 44 H 0.078 0.922 45 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.309 2.152 -14.773 16.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.036 4.036 3 N -0.221 5.221 4 C -0.025 4.025 5 O -0.077 6.077 6 C -0.163 4.163 7 C 0.422 3.578 8 O -0.372 6.372 9 N -0.320 5.320 10 C -0.023 4.023 11 C -0.143 4.143 12 C -0.148 4.148 13 H 0.149 0.851 14 C -0.153 4.153 15 C -0.033 4.033 16 C 0.356 3.644 17 O -0.441 6.441 18 N -0.353 5.353 19 C -0.007 4.007 20 C -0.006 4.006 21 C -0.630 4.630 22 H 0.075 0.925 23 C -0.180 4.180 24 N -0.538 5.538 25 Si 0.894 3.106 26 H -0.212 1.212 27 H -0.212 1.212 28 H -0.207 1.207 29 C -0.018 4.018 30 H 0.106 0.894 31 H 0.095 0.905 32 H 0.112 0.888 33 H 0.271 0.729 34 H 0.102 0.898 35 H 0.115 0.885 36 H 0.112 0.888 37 H 0.099 0.901 38 H 0.138 0.862 39 H 0.121 0.879 40 H 0.081 0.919 41 H 0.095 0.905 42 H 0.071 0.929 43 H 0.078 0.922 44 H 0.096 0.904 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 5.495 3.301 -13.919 15.324 hybrid contribution 0.300 -1.675 -0.962 1.955 sum 5.795 1.626 -14.881 16.052 Atomic orbital electron populations 1.20431 0.85289 1.04029 1.04335 1.22034 0.98407 0.86205 0.96972 1.70348 1.01301 1.31346 1.19059 1.28320 0.97665 0.79642 0.96831 1.84521 1.29531 1.24242 1.69362 1.22664 0.81501 0.95598 1.16564 1.15812 0.84709 0.80635 0.76610 1.90914 1.15002 1.81294 1.49970 1.48435 1.07227 1.03684 1.72700 1.23271 0.77800 1.00650 1.00541 1.22408 0.98670 0.93284 0.99928 1.23772 0.88343 0.99874 1.02813 0.85073 1.23424 0.97262 1.02553 0.92085 1.21587 1.05320 0.80422 0.95957 1.18759 0.79471 0.85431 0.80706 1.90648 1.56225 1.16712 1.80506 1.50139 1.50451 1.17798 1.16958 1.23364 0.96697 0.99914 0.80720 1.20662 0.95684 0.92984 0.91299 1.21802 0.95796 1.16246 1.29182 0.92529 1.25854 0.96437 0.97945 0.97717 1.70821 1.07599 1.38350 1.36995 0.83574 0.75067 0.76006 0.75987 1.21174 1.21227 1.20690 1.23879 0.98519 0.83817 0.95623 0.89362 0.90531 0.88809 0.72891 0.89786 0.88481 0.88771 0.90076 0.86225 0.87937 0.91887 0.90479 0.92924 0.92209 0.90433 0.93013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.21 9.87 36.01 0.36 -0.85 16 2 C 0.09 1.38 7.16 -82.46 -0.59 0.79 16 3 N -0.49 -7.08 11.26 -10.88 -0.12 -7.21 16 4 C 0.20 2.22 13.21 52.25 0.69 2.91 16 5 O -0.19 -2.49 7.99 4.43 0.04 -2.45 16 6 C -0.11 -1.73 7.02 -36.84 -0.26 -1.99 16 7 C 0.63 11.11 5.31 -12.83 -0.07 11.05 16 8 O -0.50 -9.99 14.14 5.20 0.07 -9.91 16 9 N -0.59 -9.16 1.80 -156.33 -0.28 -9.44 16 10 C 0.10 1.18 6.56 -1.14 -0.01 1.18 16 11 C -0.10 -0.96 6.86 -24.88 -0.17 -1.13 16 12 C -0.13 -1.53 6.92 -89.30 -0.62 -2.15 16 13 H 0.13 1.48 8.14 -51.92 -0.42 1.06 16 14 C -0.11 -1.49 9.82 -26.73 -0.26 -1.75 16 15 C 0.06 0.92 2.46 -131.86 -0.33 0.59 16 16 C 0.57 11.83 7.89 -10.99 -0.09 11.75 16 17 O -0.56 -12.78 17.33 5.55 0.10 -12.68 16 18 N -0.62 -13.64 3.61 -178.42 -0.64 -14.28 16 19 C 0.11 2.57 8.39 -2.98 -0.02 2.55 16 20 C 0.01 0.32 3.09 -90.85 -0.28 0.04 16 21 C -0.59 -15.81 8.77 -34.44 -0.30 -16.12 16 22 H 0.06 1.51 7.81 -52.49 -0.41 1.10 16 23 C 0.03 0.70 5.46 -17.82 -0.10 0.60 16 24 N -0.90 -25.60 13.65 55.43 0.76 -24.85 16 25 Si 1.07 24.20 29.90 -169.99 -5.08 19.12 16 26 H -0.29 -6.21 7.11 56.52 0.40 -5.80 16 27 H -0.29 -6.27 7.11 56.52 0.40 -5.87 16 28 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 29 C 0.10 2.35 5.39 -2.97 -0.02 2.34 16 30 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 31 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 32 H 0.09 1.40 6.47 -51.93 -0.34 1.06 16 33 H 0.26 1.32 8.06 -52.49 -0.42 0.90 16 34 H 0.08 1.09 7.66 -51.93 -0.40 0.69 16 35 H 0.10 1.04 5.50 -51.92 -0.29 0.76 16 36 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 37 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.12 1.58 7.91 -51.93 -0.41 1.17 16 39 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 40 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 41 H 0.08 1.73 8.09 -51.93 -0.42 1.31 16 42 H 0.05 1.35 7.61 -51.93 -0.40 0.96 16 43 H 0.27 7.52 7.04 -40.82 -0.29 7.23 16 44 H 0.08 1.90 6.55 -51.93 -0.34 1.56 16 45 H 0.05 1.14 6.63 -51.93 -0.34 0.79 16 LS Contribution 371.51 15.07 5.60 5.60 Total: -1.00 -34.44 371.51 -7.44 -41.88 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: -5.80 Total: 4.44 kcal Atomic # 6 Polarization: 11.86 SS G_CDS: -2.06 Total: 9.80 kcal Atomic # 7 Polarization: -55.49 SS G_CDS: -0.29 Total: -55.78 kcal Atomic # 8 Polarization: -25.25 SS G_CDS: 0.21 Total: -25.05 kcal Atomic # 14 Polarization: 24.20 SS G_CDS: -5.08 Total: 19.12 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -34.44 -7.44 -41.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270035449.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.042 kcal (2) G-P(sol) polarization free energy of solvation -34.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.882 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds