Wall clock time and date at job start Wed Apr 1 2020 03:47:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 N 1.33688 * 126.27346 * 2 1 4 4 C 1.30622 * 108.99485 * 179.97438 * 3 2 1 5 5 O 1.33665 * 109.15243 * 359.73002 * 4 3 2 6 6 C 1.35342 * 107.68509 * 0.43310 * 5 4 3 7 7 C 1.46725 * 126.64417 * 179.84018 * 6 5 4 8 8 O 1.21685 * 120.00204 * 179.68770 * 7 6 5 9 9 N 1.34778 * 120.00047 * 359.69098 * 7 6 5 10 10 C 1.49869 * 127.93327 * 3.87464 * 9 7 6 11 11 C 1.54942 * 103.40284 * 219.94060 * 10 9 7 12 12 C 1.54573 * 102.85799 * 322.44811 * 11 10 9 13 13 H 1.09009 * 118.12429 * 242.39164 * 12 11 10 14 14 C 1.52938 * 118.20383 * 85.42827 * 12 11 10 15 15 C 1.47527 * 127.04527 * 184.70250 * 9 7 6 16 16 C 1.50698 * 117.36447 * 295.05725 * 15 9 7 17 17 O 1.21287 * 119.99532 * 172.87102 * 16 15 9 18 18 N 1.34771 * 120.00676 * 352.86776 * 16 15 9 19 19 C 1.47582 * 134.49871 * 174.70225 * 18 16 15 20 20 C 1.53940 * 86.11940 * 155.36615 * 19 18 16 21 21 C 1.50701 * 113.74365 * 137.95478 * 20 19 18 22 22 H 1.08001 * 119.99460 * 0.02562 * 21 20 19 23 23 C 1.37879 * 119.99895 * 180.02562 * 21 20 19 24 24 N 1.31508 * 120.00139 * 0.02562 * 23 21 20 25 25 Si 1.86797 * 119.99627 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.47609 * 59.99797 * 25 23 21 27 27 H 1.48501 * 109.46994 * 299.99576 * 25 23 21 28 28 H 1.48496 * 109.47135 * 180.02562 * 25 23 21 29 29 C 1.47587 * 134.48907 * 354.71434 * 18 16 15 30 30 H 1.09000 * 109.47154 * 270.04376 * 1 2 3 31 31 H 1.09002 * 109.46514 * 30.04303 * 1 2 3 32 32 H 1.08998 * 109.46876 * 150.04079 * 1 2 3 33 33 H 1.07999 * 125.42367 * 179.97438 * 4 3 2 34 34 H 1.09003 * 110.69878 * 101.39733 * 10 9 7 35 35 H 1.09008 * 110.62942 * 338.44660 * 10 9 7 36 36 H 1.08999 * 110.73577 * 204.10473 * 11 10 9 37 37 H 1.08999 * 110.89024 * 80.86337 * 11 10 9 38 38 H 1.08996 * 117.45727 * 160.77062 * 14 12 11 39 39 H 1.09000 * 117.44740 * 15.99320 * 14 12 11 40 40 H 1.09003 * 113.76391 * 41.06219 * 19 18 16 41 41 H 1.09004 * 113.77052 * 269.67057 * 19 18 16 42 42 H 1.09005 * 113.74112 * 269.15796 * 20 19 18 43 43 H 0.96998 * 120.00130 * 0.02562 * 24 23 21 44 44 H 1.08993 * 113.77007 * 90.33392 * 29 18 16 45 45 H 1.09000 * 113.76675 * 318.93330 * 29 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2980 1.0778 0.0000 4 6 3.5453 0.6898 0.0006 5 8 3.5890 -0.6461 0.0069 6 6 2.3137 -1.0992 0.0006 7 6 1.8827 -2.5017 0.0009 8 8 0.6966 -2.7738 0.0005 9 7 2.8004 -3.4888 0.0015 10 6 4.2914 -3.3604 0.0820 11 6 4.7986 -4.4356 -0.9117 12 6 3.7992 -5.5961 -0.7026 13 1 4.1851 -6.5463 -0.3331 14 6 2.4870 -5.5702 -1.4877 15 6 2.5462 -4.9388 -0.0947 16 6 1.7962 -5.5873 1.0402 17 8 1.4479 -6.7459 0.9531 18 7 1.5126 -4.8802 2.1519 19 6 0.7357 -5.1477 3.3778 20 6 1.6261 -4.0859 4.0483 21 6 0.8732 -3.1484 4.9567 22 1 -0.1931 -3.2615 5.0854 23 6 1.5457 -2.1462 5.6234 24 7 2.8440 -2.0081 5.4662 25 14 0.6124 -0.9845 6.7499 26 1 -0.0384 -1.7628 7.8343 27 1 -0.4236 -0.2629 5.9681 28 1 1.5572 -0.0039 7.3422 29 6 1.8540 -3.5270 2.6321 30 1 -0.3633 0.0008 1.0277 31 1 -0.3632 0.8896 -0.5145 32 1 -0.3633 -0.8903 -0.5132 33 1 4.4044 1.3443 0.0003 34 1 4.6425 -3.5737 1.0917 35 1 4.6088 -2.3661 -0.2322 36 1 5.8116 -4.7482 -0.6582 37 1 4.7548 -4.0686 -1.9371 38 1 1.9445 -6.5099 -1.5909 39 1 2.4262 -4.8967 -2.3425 40 1 0.8752 -6.1529 3.7757 41 1 -0.3130 -4.8593 3.3051 42 1 2.5247 -4.4950 4.5103 43 1 3.3285 -2.6111 4.8810 44 1 1.1339 -2.7627 2.3404 45 1 2.8863 -3.2383 2.4345 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001270035449.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:47:23 Heat of formation + Delta-G solvation = 15.733252 kcal Electronic energy + Delta-G solvation = -32329.386284 eV Core-core repulsion = 28122.700133 eV Total energy + Delta-G solvation = -4206.686151 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -44.53272 -42.24891 -40.46344 -39.72760 -38.49070 -36.46343 -34.95395 -34.31625 -32.61655 -31.85985 -30.74311 -29.04477 -27.25888 -26.99728 -25.70312 -24.57922 -24.25502 -23.19782 -22.36216 -21.63948 -21.44757 -19.86003 -19.23195 -18.71125 -18.16054 -17.94649 -17.60146 -17.22585 -16.83344 -16.65755 -15.88314 -15.77492 -15.63838 -15.54739 -15.37525 -14.95178 -14.49390 -14.36327 -14.32460 -13.95628 -13.89481 -13.78074 -13.51541 -13.34384 -13.25527 -13.04025 -12.90352 -12.53235 -12.25147 -12.19793 -12.06824 -11.96621 -11.92980 -11.64087 -11.55138 -11.33754 -11.05782 -10.66555 -10.60399 -10.21447 -9.81177 -9.74795 -8.68961 -6.41063 -0.31718 1.08584 1.21176 1.34795 1.53765 1.59739 1.71945 1.75506 1.79336 1.87094 2.46184 2.54156 3.07918 3.09160 3.14339 3.26775 3.37169 3.57375 3.60505 3.77112 3.94264 4.03565 4.11627 4.16398 4.29093 4.29540 4.31125 4.34847 4.40010 4.49003 4.55138 4.57075 4.58624 4.63887 4.68546 4.73942 4.83778 4.91878 4.98030 5.05491 5.16464 5.25457 5.26233 5.91708 6.07344 6.10700 6.44038 6.49837 6.66613 6.69481 6.96716 7.37141 8.70797 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.008548 B = 0.005855 C = 0.004164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3274.863142 B = 4780.883228 C = 6723.365277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.076 3.924 3 N -0.522 5.522 4 C 0.230 3.770 5 O -0.187 6.187 6 C -0.132 4.132 7 C 0.626 3.374 8 O -0.539 6.539 9 N -0.583 5.583 10 C 0.091 3.909 11 C -0.090 4.090 12 C -0.094 4.094 13 H 0.140 0.860 14 C -0.102 4.102 15 C 0.012 3.988 16 C 0.560 3.440 17 O -0.587 6.587 18 N -0.628 5.628 19 C 0.116 3.884 20 C 0.005 3.995 21 C -0.606 4.606 22 H 0.051 0.949 23 C -0.016 4.016 24 N -0.921 5.921 25 Si 1.108 2.892 26 H -0.269 1.269 27 H -0.275 1.275 28 H -0.281 1.281 29 C 0.135 3.865 30 H 0.074 0.926 31 H 0.097 0.903 32 H 0.083 0.917 33 H 0.313 0.687 34 H 0.071 0.929 35 H 0.113 0.887 36 H 0.127 0.873 37 H 0.104 0.896 38 H 0.114 0.886 39 H 0.121 0.879 40 H 0.070 0.930 41 H 0.072 0.928 42 H 0.037 0.963 43 H 0.258 0.742 44 H 0.055 0.945 45 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.562 3.160 -16.176 18.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.047 4.047 3 N -0.250 5.250 4 C 0.005 3.995 5 O -0.074 6.074 6 C -0.187 4.187 7 C 0.416 3.584 8 O -0.418 6.418 9 N -0.317 5.317 10 C -0.029 4.029 11 C -0.127 4.127 12 C -0.113 4.113 13 H 0.158 0.842 14 C -0.140 4.140 15 C -0.078 4.078 16 C 0.351 3.649 17 O -0.469 6.469 18 N -0.360 5.360 19 C -0.006 4.006 20 C -0.014 4.014 21 C -0.644 4.644 22 H 0.069 0.931 23 C -0.217 4.217 24 N -0.557 5.557 25 Si 0.930 3.070 26 H -0.194 1.194 27 H -0.201 1.201 28 H -0.206 1.206 29 C 0.012 3.988 30 H 0.092 0.908 31 H 0.116 0.884 32 H 0.101 0.899 33 H 0.327 0.673 34 H 0.090 0.910 35 H 0.131 0.869 36 H 0.145 0.855 37 H 0.122 0.878 38 H 0.132 0.868 39 H 0.140 0.860 40 H 0.089 0.911 41 H 0.091 0.909 42 H 0.055 0.945 43 H 0.068 0.932 44 H 0.074 0.926 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 7.778 4.286 -15.345 17.730 hybrid contribution -0.353 -2.007 -0.547 2.110 sum 7.425 2.279 -15.892 17.689 Atomic orbital electron populations 1.20374 0.85344 1.04522 1.03523 1.22257 0.98949 0.86886 0.96655 1.70372 1.02569 1.31074 1.21032 1.29676 0.98258 0.79199 0.92321 1.84513 1.28074 1.25215 1.69569 1.22372 0.82616 0.94963 1.18762 1.16089 0.84557 0.81573 0.76202 1.90872 1.16701 1.82161 1.52051 1.48538 1.08524 1.02980 1.71619 1.23519 0.75668 1.02717 1.00952 1.22497 0.99120 0.90728 1.00353 1.24082 0.87497 1.00569 0.99164 0.84192 1.23524 0.97834 1.02045 0.90633 1.21589 1.09113 0.81203 0.95883 1.19622 0.79033 0.85188 0.81072 1.90613 1.57391 1.17859 1.81062 1.50138 1.50807 1.17429 1.17619 1.23224 0.96270 0.99724 0.81402 1.20604 0.95290 0.93570 0.91934 1.22060 0.95765 1.16807 1.29731 0.93089 1.27111 0.96567 0.99275 0.98702 1.70921 1.08294 1.38733 1.37733 0.83039 0.74360 0.74637 0.75011 1.19443 1.20078 1.20590 1.23333 0.97871 0.83574 0.94066 0.90756 0.88442 0.89861 0.67284 0.91041 0.86938 0.85469 0.87766 0.86814 0.86045 0.91128 0.90945 0.94510 0.93219 0.92646 0.92651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.41 9.87 71.24 0.70 -1.71 16 2 C 0.08 2.40 7.16 41.84 0.30 2.69 16 3 N -0.52 -14.22 11.26 -303.11 -3.41 -17.63 16 4 C 0.23 4.38 13.21 130.42 1.72 6.11 16 5 O -0.19 -4.49 7.99 -7.07 -0.06 -4.55 16 6 C -0.13 -4.19 7.02 24.05 0.17 -4.02 16 7 C 0.63 22.32 5.31 86.46 0.46 22.78 16 8 O -0.54 -22.74 14.14 -4.30 -0.06 -22.80 16 9 N -0.58 -17.88 1.80 -766.74 -1.38 -19.27 16 10 C 0.09 1.99 6.56 86.39 0.57 2.55 16 11 C -0.09 -1.27 6.86 31.79 0.22 -1.05 16 12 C -0.09 -1.96 6.92 -9.94 -0.07 -2.03 16 13 H 0.14 2.73 8.14 -2.38 -0.02 2.71 16 14 C -0.10 -2.46 9.82 30.60 0.30 -2.16 16 15 C 0.01 0.37 2.46 3.02 0.01 0.38 16 16 C 0.56 23.73 7.89 87.66 0.69 24.42 16 17 O -0.59 -27.21 17.33 -3.05 -0.05 -27.27 16 18 N -0.63 -28.48 3.61 -836.78 -3.02 -31.49 16 19 C 0.12 5.41 8.39 86.48 0.73 6.14 16 20 C 0.01 0.27 3.09 -10.88 -0.03 0.24 16 21 C -0.61 -33.19 8.77 25.60 0.22 -32.96 16 22 H 0.05 2.79 7.81 -2.91 -0.02 2.77 16 23 C -0.02 -0.89 5.46 84.66 0.46 -0.43 16 24 N -0.92 -52.84 13.65 21.45 0.29 -52.55 16 25 Si 1.11 48.65 29.90 68.60 2.05 50.70 16 26 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 27 H -0.28 -11.54 7.11 99.48 0.71 -10.83 16 28 H -0.28 -12.23 7.11 99.48 0.71 -11.53 16 29 C 0.13 6.30 5.39 86.48 0.47 6.76 16 30 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 31 H 0.10 2.38 8.14 -2.39 -0.02 2.37 16 32 H 0.08 2.64 6.47 -2.39 -0.02 2.63 16 33 H 0.31 1.59 8.06 -2.91 -0.02 1.57 16 34 H 0.07 1.74 7.66 -2.39 -0.02 1.72 16 35 H 0.11 2.09 5.50 -2.38 -0.01 2.08 16 36 H 0.13 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 38 H 0.11 2.88 7.91 -2.39 -0.02 2.86 16 39 H 0.12 2.46 8.14 -2.39 -0.02 2.44 16 40 H 0.07 3.13 8.14 -2.39 -0.02 3.11 16 41 H 0.07 3.40 8.09 -2.38 -0.02 3.39 16 42 H 0.04 1.97 7.61 -2.38 -0.02 1.95 16 43 H 0.26 14.85 7.04 -92.71 -0.65 14.19 16 44 H 0.06 2.86 6.55 -2.39 -0.02 2.84 16 45 H 0.06 2.51 6.63 -2.39 -0.02 2.49 16 Total: -1.00 -78.65 371.51 2.43 -76.22 By element: Atomic # 1 Polarization: 19.78 SS G_CDS: 1.15 Total: 20.93 kcal Atomic # 6 Polarization: 20.79 SS G_CDS: 6.91 Total: 27.70 kcal Atomic # 7 Polarization: -113.41 SS G_CDS: -7.52 Total: -120.94 kcal Atomic # 8 Polarization: -54.44 SS G_CDS: -0.17 Total: -54.61 kcal Atomic # 14 Polarization: 48.65 SS G_CDS: 2.05 Total: 50.70 kcal Total: -78.65 2.43 -76.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270035449.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.953 kcal (2) G-P(sol) polarization free energy of solvation -78.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.220 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds