Wall clock time and date at job start Wed Apr 1 2020 03:47:04
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50699 * 1
3 3 N 1.33687 * 126.27149 * 2 1
4 4 C 1.30621 * 108.99646 * 180.26370 * 3 2 1
5 5 O 1.33669 * 109.15072 * 0.02562 * 4 3 2
6 6 C 1.35337 * 107.68623 * 359.97438 * 5 4 3
7 7 C 1.46721 * 126.64471 * 180.02562 * 6 5 4
8 8 O 1.21685 * 119.99858 * 179.97438 * 7 6 5
9 9 N 1.34771 * 120.00140 * 359.95165 * 7 6 5
10 10 C 1.47256 * 135.89935 * 359.63876 * 9 7 6
11 11 C 1.52903 * 87.58677 * 153.77584 * 10 9 7
12 12 C 1.52094 * 129.75025 * 164.46587 * 11 10 9
13 13 C 1.52091 * 130.01589 * 246.51441 * 11 10 9
14 14 H 1.09000 * 117.52132 * 348.45792 * 13 11 10
15 15 C 1.50698 * 117.52213 * 133.57092 * 13 11 10
16 16 O 1.21273 * 120.00218 * 359.97438 * 15 13 11
17 17 N 1.34780 * 119.99636 * 180.02562 * 15 13 11
18 18 C 1.47072 * 136.05777 * 359.62431 * 17 15 13
19 19 C 1.53763 * 87.88521 * 152.96339 * 18 17 15
20 20 C 1.50699 * 114.26222 * 139.79110 * 19 18 17
21 21 H 1.07997 * 120.00069 * 266.47643 * 20 19 18
22 22 C 1.37873 * 119.99771 * 86.47983 * 20 19 18
23 23 N 1.31512 * 120.00350 * 359.97438 * 22 20 19
24 24 Si 1.86800 * 120.00009 * 179.97438 * 22 20 19
25 25 H 1.48504 * 109.47487 * 59.99762 * 24 22 20
26 26 H 1.48504 * 109.47703 * 179.97438 * 24 22 20
27 27 H 1.48510 * 109.47154 * 300.00058 * 24 22 20
28 28 C 1.47069 * 136.05540 * 179.97438 * 17 15 13
29 29 C 1.47251 * 135.90402 * 179.97438 * 9 7 6
30 30 H 1.08998 * 109.47496 * 269.68458 * 1 2 3
31 31 H 1.08996 * 109.47248 * 29.68567 * 1 2 3
32 32 H 1.08998 * 109.47226 * 149.68502 * 1 2 3
33 33 H 1.07998 * 125.42636 * 180.02562 * 4 3 2
34 34 H 1.08996 * 113.51530 * 268.43971 * 10 9 7
35 35 H 1.09005 * 113.51182 * 39.02040 * 10 9 7
36 36 H 1.09006 * 117.52573 * 226.77577 * 12 11 10
37 37 H 1.09001 * 117.52175 * 11.93343 * 12 11 10
38 38 H 1.08997 * 113.47015 * 267.69460 * 18 17 15
39 39 H 1.09004 * 113.46420 * 38.13867 * 18 17 15
40 40 H 1.08994 * 114.40019 * 272.67798 * 19 18 17
41 41 H 0.97002 * 120.00442 * 180.02562 * 23 22 20
42 42 H 1.08993 * 113.47016 * 321.86534 * 28 17 15
43 43 H 1.08997 * 113.46802 * 92.24959 * 28 17 15
44 44 H 1.08991 * 113.51616 * 320.98605 * 29 9 7
45 45 H 1.08999 * 113.51073 * 91.50198 * 29 9 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 7 2.2979 1.0778 0.0000
4 6 3.5452 0.6899 -0.0057
5 8 3.5889 -0.6460 -0.0100
6 6 2.3137 -1.0992 -0.0063
7 6 1.8827 -2.5017 -0.0085
8 8 0.6966 -2.7737 -0.0041
9 7 2.8003 -3.4886 -0.0157
10 6 4.2709 -3.5653 -0.0293
11 6 4.1415 -4.9296 0.6488
12 6 5.1715 -6.0370 0.8101
13 6 4.5546 -5.3711 2.0444
14 1 5.1862 -4.6948 2.6203
15 6 3.5596 -6.1716 2.8446
16 8 2.4761 -6.4401 2.3707
17 7 3.8736 -6.5881 4.0874
18 6 5.0381 -6.4772 4.9788
19 6 4.0696 -6.6053 6.1662
20 6 4.5831 -7.4625 7.2943
21 1 4.3326 -8.5124 7.3320
22 6 5.3724 -6.9064 8.2785
23 7 5.6778 -5.6280 8.2325
24 14 6.0083 -7.9687 9.6772
25 1 6.8428 -9.0663 9.1255
26 1 6.8278 -7.1386 10.5963
27 1 4.8603 -8.5461 10.4217
28 6 3.2048 -7.3588 5.1464
29 6 2.7700 -4.9608 -0.0195
30 1 -0.3634 -0.0057 1.0276
31 1 -0.3633 0.8927 -0.5089
32 1 -0.3633 -0.8871 -0.5187
33 1 4.4043 1.3444 -0.0067
34 1 4.6944 -3.6164 -1.0323
35 1 4.7514 -2.8115 0.5946
36 1 4.8579 -7.0546 0.5770
37 1 6.2087 -5.7984 0.5745
38 1 5.7320 -7.3132 4.8925
39 1 5.5353 -5.5086 4.9249
40 1 3.6424 -5.6608 6.5028
41 1 6.2335 -5.2368 8.9246
42 1 2.1405 -7.1414 5.2353
43 1 3.4144 -8.4276 5.1037
44 1 1.9879 -5.3813 0.6125
45 1 2.7822 -5.3935 -1.0198
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001270035714.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:47:04
Heat of formation + Delta-G solvation = 45.759982 kcal
Electronic energy + Delta-G solvation = -29563.726157 eV
Core-core repulsion = 25358.342062 eV
Total energy + Delta-G solvation = -4205.384094 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 345.152 amu
Computer time = 0.99 seconds
Orbital eigenvalues (eV)
-44.52469 -41.97830 -40.88326 -39.64313 -38.49876 -36.46973 -35.65333 -34.65068
-32.78739 -31.17546 -30.16233 -28.22285 -27.31508 -27.19917 -26.70908 -24.72615
-24.47784 -22.76394 -22.06545 -21.33633 -20.29195 -19.35325 -18.83761 -18.72756
-18.11010 -18.05289 -17.66337 -17.14389 -16.80050 -16.63948 -16.53163 -16.12652
-15.75288 -15.46191 -14.98212 -14.79320 -14.56428 -14.33926 -14.26539 -14.12847
-14.03043 -13.42738 -13.29756 -13.27596 -13.23978 -13.14578 -12.72876 -12.62293
-12.23080 -12.20068 -12.13570 -11.91438 -11.67560 -11.49355 -11.36945 -11.11833
-11.03851 -10.65473 -10.50090 -10.26371 -9.81990 -9.55565 -8.17025 -6.28424
-0.32237 1.20976 1.33465 1.46761 1.48931 1.50384 1.57419 1.75875
1.84214 1.90746 2.45711 2.73817 3.00009 3.08284 3.13475 3.25740
3.40774 3.58958 3.67106 3.85272 4.13195 4.21142 4.26227 4.32069
4.36282 4.39627 4.44244 4.49828 4.55473 4.59036 4.67393 4.68251
4.74779 4.75083 4.78301 4.84857 4.91621 4.94569 4.95419 5.00555
5.12263 5.23330 5.58237 5.80299 6.22095 6.35282 6.45416 6.73577
6.79894 6.91188 7.16256 7.41728 8.92802
Molecular weight = 345.15amu
Principal moments of inertia in cm(-1)
A = 0.013970 B = 0.002355 C = 0.002218
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2003.866111 B =11888.571240 C =12620.010785
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.081 4.081
2 C 0.072 3.928
3 N -0.524 5.524
4 C 0.231 3.769
5 O -0.187 6.187
6 C -0.131 4.131
7 C 0.627 3.373
8 O -0.555 6.555
9 N -0.643 5.643
10 C 0.155 3.845
11 C -0.152 4.152
12 C -0.078 4.078
13 C -0.167 4.167
14 H 0.136 0.864
15 C 0.551 3.449
16 O -0.592 6.592
17 N -0.642 5.642
18 C 0.119 3.881
19 C 0.021 3.979
20 C -0.529 4.529
21 H 0.067 0.933
22 C 0.022 3.978
23 N -0.919 5.919
24 Si 0.958 3.042
25 H -0.265 1.265
26 H -0.287 1.287
27 H -0.274 1.274
28 C 0.104 3.896
29 C 0.135 3.865
30 H 0.082 0.918
31 H 0.094 0.906
32 H 0.081 0.919
33 H 0.312 0.688
34 H 0.137 0.863
35 H 0.093 0.907
36 H 0.105 0.895
37 H 0.154 0.846
38 H 0.086 0.914
39 H 0.061 0.939
40 H 0.033 0.967
41 H 0.265 0.735
42 H 0.048 0.952
43 H 0.087 0.913
44 H 0.066 0.934
45 H 0.120 0.880
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.966 8.951 -20.283 22.719
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.138 4.138
2 C -0.051 4.051
3 N -0.253 5.253
4 C 0.007 3.993
5 O -0.074 6.074
6 C -0.186 4.186
7 C 0.417 3.583
8 O -0.436 6.436
9 N -0.375 5.375
10 C 0.035 3.965
11 C -0.154 4.154
12 C -0.115 4.115
13 C -0.188 4.188
14 H 0.153 0.847
15 C 0.343 3.657
16 O -0.474 6.474
17 N -0.375 5.375
18 C -0.004 4.004
19 C 0.002 3.998
20 C -0.567 4.567
21 H 0.085 0.915
22 C -0.178 4.178
23 N -0.557 5.557
24 Si 0.784 3.216
25 H -0.189 1.189
26 H -0.213 1.213
27 H -0.199 1.199
28 C -0.018 4.018
29 C 0.014 3.986
30 H 0.100 0.900
31 H 0.113 0.887
32 H 0.100 0.900
33 H 0.327 0.673
34 H 0.155 0.845
35 H 0.111 0.889
36 H 0.124 0.876
37 H 0.172 0.828
38 H 0.104 0.896
39 H 0.080 0.920
40 H 0.052 0.948
41 H 0.074 0.926
42 H 0.067 0.933
43 H 0.105 0.895
44 H 0.085 0.915
45 H 0.138 0.862
Dipole moment (debyes) X Y Z Total
from point charges 3.534 9.634 -20.638 23.049
hybrid contribution 0.131 -0.925 1.292 1.594
sum 3.665 8.709 -19.346 21.530
Atomic orbital electron populations
1.20390 0.85069 1.04448 1.03892 1.22320 0.99082 0.86752 0.96974
1.70396 1.02610 1.31121 1.21159 1.29671 0.98227 0.78989 0.92419
1.84509 1.28214 1.25334 1.69301 1.22417 0.82584 0.94953 1.18626
1.15942 0.84174 0.81409 0.76791 1.90841 1.16741 1.82343 1.53657
1.49446 1.09573 1.07580 1.70933 1.22825 0.78238 0.93117 1.02362
1.21906 0.97615 0.98843 0.97021 1.23005 0.99207 0.96558 0.92777
1.21991 1.01963 1.04308 0.90490 0.84660 1.19919 0.87295 0.79344
0.79141 1.90589 1.25955 1.60875 1.70005 1.49974 1.21098 1.53115
1.13291 1.23366 0.89871 1.00791 0.86323 1.20262 0.92756 0.95504
0.91310 1.21169 1.31491 0.95857 1.08171 0.91502 1.25757 0.96111
0.95979 1.00001 1.70049 1.37508 1.12693 1.35415 0.85604 0.78387
0.78771 0.78858 1.18936 1.21269 1.19938 1.23222 0.97296 0.96848
0.84464 1.22693 0.96344 0.78241 1.01370 0.89963 0.88691 0.89998
0.67299 0.84526 0.88921 0.87634 0.82779 0.89568 0.92030 0.94837
0.92614 0.93342 0.89525 0.91526 0.86249
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.08 -1.84 9.87 71.24 0.70 -1.14 16
2 C 0.07 1.80 7.16 41.83 0.30 2.10 16
3 N -0.52 -11.03 11.26 -303.12 -3.41 -14.44 16
4 C 0.23 3.04 13.21 130.42 1.72 4.77 16
5 O -0.19 -3.46 9.47 -7.06 -0.07 -3.52 16
6 C -0.13 -3.36 7.13 24.05 0.17 -3.19 16
7 C 0.63 19.27 8.04 86.46 0.69 19.96 16
8 O -0.55 -20.70 15.57 -4.30 -0.07 -20.77 16
9 N -0.64 -16.77 3.69 -860.19 -3.17 -19.94 16
10 C 0.16 2.55 7.86 83.74 0.66 3.21 16
11 C -0.15 -3.19 3.15 -52.94 -0.17 -3.36 16
12 C -0.08 -1.28 10.24 30.37 0.31 -0.97 16
13 C -0.17 -4.37 6.02 -11.77 -0.07 -4.44 16
14 H 0.14 3.29 8.14 -2.39 -0.02 3.27 16
15 C 0.55 20.72 7.86 87.66 0.69 21.41 16
16 O -0.59 -25.92 15.03 -3.01 -0.05 -25.96 16
17 N -0.64 -25.55 3.69 -857.69 -3.16 -28.71 16
18 C 0.12 4.77 8.00 83.28 0.67 5.43 16
19 C 0.02 0.99 3.79 -11.12 -0.04 0.95 16
20 C -0.53 -26.53 8.83 25.60 0.23 -26.30 16
21 H 0.07 3.23 7.81 -2.91 -0.02 3.21 16
22 C 0.02 1.12 5.46 84.65 0.46 1.58 16
23 N -0.92 -49.68 13.26 21.45 0.28 -49.40 16
24 Si 0.96 40.15 29.54 68.60 2.03 42.18 16
25 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16
26 H -0.29 -11.96 7.11 99.48 0.71 -11.26 16
27 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16
28 C 0.10 4.38 8.17 83.18 0.68 5.06 16
29 C 0.13 3.49 8.20 83.64 0.69 4.17 16
30 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16
31 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16
32 H 0.08 2.08 6.48 -2.39 -0.02 2.06 16
33 H 0.31 -0.13 8.06 -2.91 -0.02 -0.15 16
34 H 0.14 1.24 8.14 -2.39 -0.02 1.22 16
35 H 0.09 1.41 7.56 -2.38 -0.02 1.39 16
36 H 0.11 1.84 8.14 -2.38 -0.02 1.82 16
37 H 0.15 1.31 8.14 -2.39 -0.02 1.29 16
38 H 0.09 3.28 8.10 -2.39 -0.02 3.26 16
39 H 0.06 2.42 8.14 -2.38 -0.02 2.40 16
40 H 0.03 1.79 8.11 -2.39 -0.02 1.77 16
41 H 0.26 13.66 8.31 -92.71 -0.77 12.89 16
42 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16
43 H 0.09 3.40 8.10 -2.39 -0.02 3.38 16
44 H 0.07 2.37 5.98 -2.39 -0.01 2.36 16
45 H 0.12 2.34 8.14 -2.39 -0.02 2.32 16
Total: -1.00 -76.09 387.60 1.10 -74.99
By element:
Atomic # 1 Polarization: 15.31 SS G_CDS: 1.02 Total: 16.33 kcal
Atomic # 6 Polarization: 21.55 SS G_CDS: 7.69 Total: 29.24 kcal
Atomic # 7 Polarization: -103.03 SS G_CDS: -9.46 Total: -112.49 kcal
Atomic # 8 Polarization: -50.08 SS G_CDS: -0.18 Total: -50.26 kcal
Atomic # 14 Polarization: 40.15 SS G_CDS: 2.03 Total: 42.18 kcal
Total: -76.09 1.10 -74.99 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001270035714.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 120.751 kcal
(2) G-P(sol) polarization free energy of solvation -76.088 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.663 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.096 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.991 kcal
(6) G-S(sol) free energy of system = (1) + (5) 45.760 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.00 seconds