Wall clock time and date at job start Wed Apr 1 2020 03:47:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.33689 * 126.27201 * 2 1 4 4 C 1.30618 * 108.99416 * 179.97438 * 3 2 1 5 5 O 1.33674 * 109.15289 * 359.73320 * 4 3 2 6 6 C 1.35341 * 107.68100 * 0.43115 * 5 4 3 7 7 C 1.46725 * 126.64164 * 179.83942 * 6 5 4 8 8 O 1.21688 * 119.99847 * 179.69006 * 7 6 5 9 9 N 1.34777 * 120.00121 * 359.68894 * 7 6 5 10 10 C 1.47714 * 134.39704 * 179.97438 * 9 7 6 11 11 C 1.53289 * 85.85768 * 155.92781 * 10 9 7 12 12 C 1.52325 * 128.81811 * 243.37930 * 11 10 9 13 13 C 1.52330 * 128.81660 * 163.01666 * 11 10 9 14 14 H 1.08991 * 117.51848 * 10.40942 * 13 11 10 15 15 C 1.50702 * 117.51365 * 225.33244 * 13 11 10 16 16 O 1.21283 * 119.99892 * 0.02562 * 15 13 11 17 17 N 1.34772 * 120.00146 * 180.02562 * 15 13 11 18 18 C 1.47581 * 134.49721 * 180.02562 * 17 15 13 19 19 C 1.53940 * 86.12007 * 155.35572 * 18 17 15 20 20 C 1.50703 * 113.74172 * 137.95170 * 19 18 17 21 21 H 1.07994 * 119.99603 * 0.02562 * 20 19 18 22 22 C 1.37875 * 119.99838 * 180.02562 * 20 19 18 23 23 N 1.31513 * 120.00380 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 119.99848 * 180.02562 * 22 20 19 25 25 H 1.48506 * 109.47297 * 359.97438 * 24 22 20 26 26 H 1.48503 * 109.47261 * 239.99776 * 24 22 20 27 27 H 1.48500 * 109.47454 * 119.99769 * 24 22 20 28 28 C 1.47588 * 134.49111 * 359.97438 * 17 15 13 29 29 C 1.47718 * 134.39134 * 0.02923 * 9 7 6 30 30 H 1.08999 * 109.47616 * 270.04269 * 1 2 3 31 31 H 1.09009 * 109.46940 * 30.04260 * 1 2 3 32 32 H 1.08999 * 109.47236 * 150.03309 * 1 2 3 33 33 H 1.08000 * 125.42556 * 179.97438 * 4 3 2 34 34 H 1.09008 * 113.81061 * 41.69588 * 10 9 7 35 35 H 1.08995 * 113.81633 * 270.16338 * 10 9 7 36 36 H 1.08998 * 117.51782 * 134.66294 * 12 11 10 37 37 H 1.09002 * 117.51429 * 349.54342 * 12 11 10 38 38 H 1.09005 * 113.76454 * 41.05367 * 18 17 15 39 39 H 1.09002 * 113.87038 * 269.67365 * 18 17 15 40 40 H 1.08998 * 113.74376 * 269.15523 * 19 18 17 41 41 H 0.97001 * 119.99667 * 0.02562 * 23 22 20 42 42 H 1.09000 * 113.76662 * 90.33888 * 28 17 15 43 43 H 1.09003 * 113.76968 * 318.94602 * 28 17 15 44 44 H 1.09006 * 113.81130 * 89.83732 * 29 9 7 45 45 H 1.08999 * 113.81337 * 318.31070 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2980 1.0778 0.0000 4 6 3.5452 0.6899 0.0006 5 8 3.5890 -0.6461 0.0068 6 6 2.3136 -1.0992 0.0005 7 6 1.8826 -2.5017 0.0007 8 8 0.6965 -2.7737 0.0003 9 7 2.8003 -3.4888 0.0013 10 6 2.7310 -4.9643 0.0020 11 6 4.1306 -4.9195 -0.6215 12 6 4.5804 -5.4033 -1.9941 13 6 5.1654 -6.0325 -0.7263 14 1 4.8458 -7.0428 -0.4711 15 6 6.5909 -5.6931 -0.3746 16 8 6.8775 -4.5681 -0.0236 17 7 7.5473 -6.6396 -0.4502 18 6 8.9998 -6.6655 -0.1900 19 6 8.8241 -8.1760 0.0495 20 6 9.9151 -9.0180 -0.5604 21 1 10.7206 -8.5469 -1.1041 22 6 9.8847 -10.3897 -0.4244 23 7 8.9041 -10.9633 0.2380 24 14 11.2374 -11.4333 -1.1798 25 1 12.2164 -10.5531 -1.8669 26 1 10.6449 -12.3759 -2.1626 27 1 11.9259 -12.2006 -0.1110 28 6 7.5626 -8.0669 -0.8255 29 6 4.2770 -3.5268 0.0024 30 1 -0.3634 0.0008 1.0276 31 1 -0.3633 0.8897 -0.5145 32 1 -0.3634 -0.8903 -0.5133 33 1 4.4044 1.3443 0.0003 34 1 1.9666 -5.3693 -0.6611 35 1 2.7075 -5.4033 0.9994 36 1 5.2267 -4.7441 -2.5736 37 1 3.8758 -6.0000 -2.5735 38 1 9.2966 -6.1111 0.7003 39 1 9.6085 -6.4268 -1.0622 40 1 8.6182 -8.4347 1.0881 41 1 8.2019 -10.4213 0.6306 42 1 7.7469 -8.2404 -1.8857 43 1 6.7122 -8.6310 -0.4424 44 1 4.7163 -3.5355 1.0000 45 1 4.7366 -2.7937 -0.6604 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001270035715.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:47:09 Heat of formation + Delta-G solvation = 56.735603 kcal Electronic energy + Delta-G solvation = -29279.999797 eV Core-core repulsion = 25075.091641 eV Total energy + Delta-G solvation = -4204.908156 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -43.76893 -40.88814 -39.54510 -38.47682 -37.08267 -35.67448 -34.60765 -32.94662 -31.99149 -29.57476 -28.98059 -27.25033 -26.57932 -25.56092 -25.07464 -23.89262 -23.29954 -21.97780 -20.81999 -20.26410 -19.15707 -18.25133 -17.93931 -17.27926 -17.25989 -16.90423 -16.72923 -16.19393 -15.96068 -15.19719 -15.04916 -14.94683 -14.48236 -14.03016 -13.88009 -13.70940 -13.57262 -13.39529 -13.33545 -13.22425 -12.62498 -12.52613 -12.31727 -11.99700 -11.77437 -11.58600 -11.45716 -11.29414 -11.07852 -11.06179 -10.92226 -10.73524 -10.61241 -10.24571 -10.11147 -9.76407 -9.54702 -9.39536 -8.96461 -8.70248 -8.60252 -8.07655 -6.58150 -4.31996 0.48323 2.03283 2.06804 2.49743 2.69203 2.80768 3.20458 3.34810 3.36315 3.50273 3.60640 3.67934 3.93581 4.16779 4.29813 4.37209 4.38207 4.60299 4.90348 4.95135 4.99690 5.11360 5.12974 5.16552 5.24764 5.33275 5.34658 5.43471 5.50410 5.54614 5.57123 5.62519 5.67783 5.73218 5.82630 5.94753 5.95645 6.05630 6.16213 6.31949 6.35422 6.52749 7.13387 7.20153 7.25535 7.65742 7.90496 8.21543 8.26373 8.51702 8.64503 9.40991 10.81324 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.029398 B = 0.001935 C = 0.001852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.224474 B =14465.967657 C =15115.709319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.078 3.922 3 N -0.495 5.495 4 C 0.203 3.797 5 O -0.185 6.185 6 C -0.109 4.109 7 C 0.632 3.368 8 O -0.519 6.519 9 N -0.636 5.636 10 C 0.155 3.845 11 C -0.155 4.155 12 C -0.111 4.111 13 C -0.151 4.151 14 H 0.128 0.872 15 C 0.553 3.447 16 O -0.562 6.562 17 N -0.633 5.633 18 C 0.113 3.887 19 C 0.012 3.988 20 C -0.596 4.596 21 H 0.057 0.943 22 C 0.025 3.975 23 N -0.904 5.904 24 Si 1.074 2.926 25 H -0.288 1.288 26 H -0.286 1.286 27 H -0.286 1.286 28 C 0.097 3.903 29 C 0.163 3.837 30 H 0.082 0.918 31 H 0.077 0.923 32 H 0.095 0.905 33 H 0.257 0.743 34 H 0.091 0.909 35 H 0.097 0.903 36 H 0.105 0.895 37 H 0.111 0.889 38 H 0.062 0.938 39 H 0.077 0.923 40 H 0.055 0.945 41 H 0.270 0.730 42 H 0.080 0.920 43 H 0.060 0.940 44 H 0.100 0.900 45 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.497 16.220 -2.303 20.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.046 4.046 3 N -0.224 5.224 4 C -0.022 4.022 5 O -0.070 6.070 6 C -0.164 4.164 7 C 0.421 3.579 8 O -0.398 6.398 9 N -0.370 5.370 10 C 0.033 3.967 11 C -0.156 4.156 12 C -0.148 4.148 13 C -0.173 4.173 14 H 0.146 0.854 15 C 0.342 3.658 16 O -0.442 6.442 17 N -0.366 5.366 18 C -0.009 4.009 19 C -0.007 4.007 20 C -0.634 4.634 21 H 0.076 0.924 22 C -0.181 4.181 23 N -0.538 5.538 24 Si 0.902 3.098 25 H -0.214 1.214 26 H -0.212 1.212 27 H -0.212 1.212 28 C -0.026 4.026 29 C 0.041 3.959 30 H 0.100 0.900 31 H 0.096 0.904 32 H 0.113 0.887 33 H 0.273 0.727 34 H 0.109 0.891 35 H 0.115 0.885 36 H 0.123 0.877 37 H 0.129 0.871 38 H 0.081 0.919 39 H 0.095 0.905 40 H 0.073 0.927 41 H 0.081 0.919 42 H 0.099 0.901 43 H 0.079 0.921 44 H 0.118 0.882 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -12.871 15.979 -2.287 20.645 hybrid contribution -0.022 1.006 0.215 1.029 sum -12.893 16.985 -2.072 21.425 Atomic orbital electron populations 1.20396 0.85260 1.04386 1.03756 1.22074 0.98410 0.86286 0.97830 1.70369 1.01344 1.31347 1.19389 1.28389 0.97612 0.79554 0.96632 1.84581 1.29486 1.24285 1.68682 1.22796 0.81558 0.95856 1.16235 1.15802 0.84498 0.80674 0.76958 1.90860 1.15139 1.81702 1.52059 1.49802 1.08551 1.06929 1.71689 1.22685 0.94272 0.78644 1.01082 1.22486 0.95180 0.95932 1.02016 1.22824 1.01541 1.01471 0.88958 1.22138 0.92060 0.98832 1.04277 0.85402 1.19166 0.85214 0.83621 0.77776 1.90625 1.82916 1.20847 1.49846 1.50342 1.09312 1.12183 1.64773 1.23363 0.78878 0.98889 0.99731 1.20653 0.93263 0.90629 0.96154 1.21864 1.09866 0.93443 1.38256 0.92426 1.25889 1.00640 0.96198 0.95376 1.70768 1.11594 1.39477 1.31971 0.83459 0.74804 0.75291 0.76250 1.21359 1.21239 1.21207 1.23883 1.00597 0.77019 1.01093 1.22657 0.77682 0.93921 1.01622 0.89969 0.90398 0.88674 0.72747 0.89097 0.88457 0.87702 0.87063 0.91947 0.90528 0.92748 0.91892 0.90145 0.92119 0.88189 0.89319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.77 9.87 36.01 0.36 -0.41 16 2 C 0.08 0.90 7.16 -82.47 -0.59 0.31 16 3 N -0.50 -5.39 11.26 -10.88 -0.12 -5.52 16 4 C 0.20 1.70 13.21 52.25 0.69 2.39 16 5 O -0.18 -2.01 9.37 4.41 0.04 -1.97 16 6 C -0.11 -1.34 7.11 -36.84 -0.26 -1.60 16 7 C 0.63 8.37 8.02 -12.83 -0.10 8.27 16 8 O -0.52 -7.70 15.52 5.20 0.08 -7.62 16 9 N -0.64 -7.68 3.61 -183.30 -0.66 -8.34 16 10 C 0.15 1.58 8.85 -3.23 -0.03 1.55 16 11 C -0.15 -1.76 3.04 -155.01 -0.47 -2.23 16 12 C -0.11 -1.19 10.24 -27.00 -0.28 -1.46 16 13 C -0.15 -1.95 5.94 -92.03 -0.55 -2.50 16 14 H 0.13 1.51 8.14 -51.93 -0.42 1.08 16 15 C 0.55 9.51 7.84 -10.99 -0.09 9.43 16 16 O -0.56 -10.84 15.86 5.55 0.09 -10.75 16 17 N -0.63 -11.73 3.61 -178.43 -0.64 -12.37 16 18 C 0.11 2.22 8.39 -2.98 -0.02 2.19 16 19 C 0.01 0.27 3.09 -90.86 -0.28 -0.01 16 20 C -0.60 -14.76 8.77 -34.44 -0.30 -15.06 16 21 H 0.06 1.43 7.81 -52.49 -0.41 1.02 16 22 C 0.02 0.63 5.46 -17.82 -0.10 0.53 16 23 N -0.90 -24.54 13.65 55.43 0.76 -23.78 16 24 Si 1.07 22.91 29.90 -169.99 -5.08 17.83 16 25 H -0.29 -5.85 7.11 56.52 0.40 -5.45 16 26 H -0.29 -6.02 7.11 56.52 0.40 -5.62 16 27 H -0.29 -6.07 7.11 56.52 0.40 -5.67 16 28 C 0.10 1.85 8.12 -2.99 -0.02 1.82 16 29 C 0.16 1.98 6.37 -3.22 -0.02 1.96 16 30 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 31 H 0.08 0.63 8.14 -51.92 -0.42 0.20 16 32 H 0.09 0.97 6.47 -51.93 -0.34 0.64 16 33 H 0.26 0.77 8.06 -52.49 -0.42 0.34 16 34 H 0.09 0.83 8.14 -51.92 -0.42 0.41 16 35 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.10 1.18 8.14 -51.93 -0.42 0.76 16 37 H 0.11 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 39 H 0.08 1.47 8.09 -51.93 -0.42 1.05 16 40 H 0.05 1.29 7.61 -51.93 -0.40 0.89 16 41 H 0.27 7.21 7.04 -40.82 -0.29 6.92 16 42 H 0.08 1.55 8.09 -51.93 -0.42 1.13 16 43 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 44 H 0.10 1.29 8.01 -51.93 -0.42 0.87 16 45 H 0.09 1.11 7.59 -51.93 -0.39 0.71 16 LS Contribution 387.62 15.07 5.84 5.84 Total: -1.00 -31.60 387.62 -7.87 -39.47 By element: Atomic # 1 Polarization: 8.12 SS G_CDS: -6.10 Total: 2.01 kcal Atomic # 6 Polarization: 7.25 SS G_CDS: -2.07 Total: 5.18 kcal Atomic # 7 Polarization: -49.34 SS G_CDS: -0.67 Total: -50.01 kcal Atomic # 8 Polarization: -20.54 SS G_CDS: 0.21 Total: -20.33 kcal Atomic # 14 Polarization: 22.91 SS G_CDS: -5.08 Total: 17.83 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -31.60 -7.87 -39.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270035715.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.207 kcal (2) G-P(sol) polarization free energy of solvation -31.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.472 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds