Wall clock time and date at job start Wed Apr 1 2020 03:47:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.33689 * 126.27201 * 2 1 4 4 C 1.30618 * 108.99416 * 179.97438 * 3 2 1 5 5 O 1.33674 * 109.15289 * 359.73320 * 4 3 2 6 6 C 1.35341 * 107.68100 * 0.43115 * 5 4 3 7 7 C 1.46725 * 126.64164 * 179.83942 * 6 5 4 8 8 O 1.21688 * 119.99847 * 179.69006 * 7 6 5 9 9 N 1.34777 * 120.00121 * 359.68894 * 7 6 5 10 10 C 1.47714 * 134.39704 * 179.97438 * 9 7 6 11 11 C 1.53289 * 85.85768 * 155.92781 * 10 9 7 12 12 C 1.52325 * 128.81811 * 243.37930 * 11 10 9 13 13 C 1.52330 * 128.81660 * 163.01666 * 11 10 9 14 14 H 1.08991 * 117.51848 * 10.40942 * 13 11 10 15 15 C 1.50702 * 117.51365 * 225.33244 * 13 11 10 16 16 O 1.21283 * 119.99892 * 0.02562 * 15 13 11 17 17 N 1.34772 * 120.00146 * 180.02562 * 15 13 11 18 18 C 1.47581 * 134.49721 * 180.02562 * 17 15 13 19 19 C 1.53940 * 86.12007 * 155.35572 * 18 17 15 20 20 C 1.50703 * 113.74172 * 137.95170 * 19 18 17 21 21 H 1.07994 * 119.99603 * 0.02562 * 20 19 18 22 22 C 1.37875 * 119.99838 * 180.02562 * 20 19 18 23 23 N 1.31513 * 120.00380 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 119.99848 * 180.02562 * 22 20 19 25 25 H 1.48506 * 109.47297 * 359.97438 * 24 22 20 26 26 H 1.48503 * 109.47261 * 239.99776 * 24 22 20 27 27 H 1.48500 * 109.47454 * 119.99769 * 24 22 20 28 28 C 1.47588 * 134.49111 * 359.97438 * 17 15 13 29 29 C 1.47718 * 134.39134 * 0.02923 * 9 7 6 30 30 H 1.08999 * 109.47616 * 270.04269 * 1 2 3 31 31 H 1.09009 * 109.46940 * 30.04260 * 1 2 3 32 32 H 1.08999 * 109.47236 * 150.03309 * 1 2 3 33 33 H 1.08000 * 125.42556 * 179.97438 * 4 3 2 34 34 H 1.09008 * 113.81061 * 41.69588 * 10 9 7 35 35 H 1.08995 * 113.81633 * 270.16338 * 10 9 7 36 36 H 1.08998 * 117.51782 * 134.66294 * 12 11 10 37 37 H 1.09002 * 117.51429 * 349.54342 * 12 11 10 38 38 H 1.09005 * 113.76454 * 41.05367 * 18 17 15 39 39 H 1.09002 * 113.87038 * 269.67365 * 18 17 15 40 40 H 1.08998 * 113.74376 * 269.15523 * 19 18 17 41 41 H 0.97001 * 119.99667 * 0.02562 * 23 22 20 42 42 H 1.09000 * 113.76662 * 90.33888 * 28 17 15 43 43 H 1.09003 * 113.76968 * 318.94602 * 28 17 15 44 44 H 1.09006 * 113.81130 * 89.83732 * 29 9 7 45 45 H 1.08999 * 113.81337 * 318.31070 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2980 1.0778 0.0000 4 6 3.5452 0.6899 0.0006 5 8 3.5890 -0.6461 0.0068 6 6 2.3136 -1.0992 0.0005 7 6 1.8826 -2.5017 0.0007 8 8 0.6965 -2.7737 0.0003 9 7 2.8003 -3.4888 0.0013 10 6 2.7310 -4.9643 0.0020 11 6 4.1306 -4.9195 -0.6215 12 6 4.5804 -5.4033 -1.9941 13 6 5.1654 -6.0325 -0.7263 14 1 4.8458 -7.0428 -0.4711 15 6 6.5909 -5.6931 -0.3746 16 8 6.8775 -4.5681 -0.0236 17 7 7.5473 -6.6396 -0.4502 18 6 8.9998 -6.6655 -0.1900 19 6 8.8241 -8.1760 0.0495 20 6 9.9151 -9.0180 -0.5604 21 1 10.7206 -8.5469 -1.1041 22 6 9.8847 -10.3897 -0.4244 23 7 8.9041 -10.9633 0.2380 24 14 11.2374 -11.4333 -1.1798 25 1 12.2164 -10.5531 -1.8669 26 1 10.6449 -12.3759 -2.1626 27 1 11.9259 -12.2006 -0.1110 28 6 7.5626 -8.0669 -0.8255 29 6 4.2770 -3.5268 0.0024 30 1 -0.3634 0.0008 1.0276 31 1 -0.3633 0.8897 -0.5145 32 1 -0.3634 -0.8903 -0.5133 33 1 4.4044 1.3443 0.0003 34 1 1.9666 -5.3693 -0.6611 35 1 2.7075 -5.4033 0.9994 36 1 5.2267 -4.7441 -2.5736 37 1 3.8758 -6.0000 -2.5735 38 1 9.2966 -6.1111 0.7003 39 1 9.6085 -6.4268 -1.0622 40 1 8.6182 -8.4347 1.0881 41 1 8.2019 -10.4213 0.6306 42 1 7.7469 -8.2404 -1.8857 43 1 6.7122 -8.6310 -0.4424 44 1 4.7163 -3.5355 1.0000 45 1 4.7366 -2.7937 -0.6604 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001270035715.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:47:08 Heat of formation + Delta-G solvation = 35.380740 kcal Electronic energy + Delta-G solvation = -29280.925813 eV Core-core repulsion = 25075.091641 eV Total energy + Delta-G solvation = -4205.834172 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -44.55330 -41.91314 -40.88666 -39.62183 -38.47155 -36.49337 -35.61782 -34.83059 -32.79136 -30.95297 -30.06435 -28.12345 -27.46920 -27.09755 -26.81415 -24.67439 -24.59353 -22.80223 -22.23569 -21.31895 -20.21015 -19.49355 -19.01725 -18.82948 -18.11729 -18.09066 -17.72530 -17.21106 -16.93473 -16.59683 -16.37612 -15.92634 -15.63506 -15.54282 -14.99380 -14.93410 -14.61487 -14.37510 -14.30791 -14.06249 -14.00545 -13.60796 -13.46031 -13.28339 -13.26859 -13.11312 -12.78936 -12.46628 -12.25339 -12.18316 -11.95740 -11.87704 -11.84235 -11.55367 -11.43566 -11.08401 -11.02945 -10.54600 -10.43140 -10.28113 -9.85030 -9.61809 -8.59085 -6.32494 -0.34535 1.18792 1.29311 1.44536 1.62384 1.68133 1.68548 1.79654 1.85052 1.91827 2.60899 2.64532 2.92317 3.05337 3.19400 3.26599 3.35405 3.57413 3.58579 3.76342 4.04097 4.11728 4.21627 4.29235 4.32060 4.36440 4.39024 4.45119 4.46257 4.54015 4.58630 4.62621 4.64401 4.72103 4.72867 4.77365 4.77854 4.79315 4.85149 4.93961 5.03015 5.22647 5.42502 6.02962 6.22354 6.25678 6.39979 6.61528 6.71670 6.82986 7.11617 7.46574 8.81729 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.029398 B = 0.001935 C = 0.001852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.224474 B =14465.967657 C =15115.709319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.075 3.925 3 N -0.521 5.521 4 C 0.225 3.775 5 O -0.195 6.195 6 C -0.138 4.138 7 C 0.628 3.372 8 O -0.543 6.543 9 N -0.637 5.637 10 C 0.157 3.843 11 C -0.149 4.149 12 C -0.094 4.094 13 C -0.161 4.161 14 H 0.143 0.857 15 C 0.550 3.450 16 O -0.585 6.585 17 N -0.636 5.636 18 C 0.117 3.883 19 C -0.003 4.003 20 C -0.602 4.602 21 H 0.054 0.946 22 C -0.021 4.021 23 N -0.931 5.931 24 Si 1.116 2.884 25 H -0.273 1.273 26 H -0.280 1.280 27 H -0.286 1.286 28 C 0.115 3.885 29 C 0.163 3.837 30 H 0.089 0.911 31 H 0.091 0.909 32 H 0.085 0.915 33 H 0.305 0.695 34 H 0.107 0.893 35 H 0.109 0.891 36 H 0.100 0.900 37 H 0.141 0.859 38 H 0.062 0.938 39 H 0.081 0.919 40 H 0.032 0.968 41 H 0.262 0.738 42 H 0.082 0.918 43 H 0.071 0.929 44 H 0.089 0.911 45 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.791 16.861 -3.414 21.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.048 4.048 3 N -0.251 5.251 4 C 0.001 3.999 5 O -0.081 6.081 6 C -0.193 4.193 7 C 0.418 3.582 8 O -0.424 6.424 9 N -0.370 5.370 10 C 0.036 3.964 11 C -0.151 4.151 12 C -0.131 4.131 13 C -0.182 4.182 14 H 0.161 0.839 15 C 0.341 3.659 16 O -0.467 6.467 17 N -0.369 5.369 18 C -0.005 4.005 19 C -0.022 4.022 20 C -0.640 4.640 21 H 0.072 0.928 22 C -0.221 4.221 23 N -0.567 5.567 24 Si 0.939 3.061 25 H -0.197 1.197 26 H -0.206 1.206 27 H -0.212 1.212 28 C -0.007 4.007 29 C 0.042 3.958 30 H 0.108 0.892 31 H 0.110 0.890 32 H 0.104 0.896 33 H 0.320 0.680 34 H 0.125 0.875 35 H 0.127 0.873 36 H 0.118 0.882 37 H 0.159 0.841 38 H 0.080 0.920 39 H 0.099 0.901 40 H 0.050 0.950 41 H 0.072 0.928 42 H 0.100 0.900 43 H 0.089 0.911 44 H 0.107 0.893 45 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -13.175 16.637 -3.401 21.493 hybrid contribution 0.136 0.981 0.610 1.163 sum -13.039 17.618 -2.791 22.095 Atomic orbital electron populations 1.20421 0.84367 1.04549 1.04251 1.22421 0.99278 0.86427 0.96700 1.70411 1.02330 1.31276 1.21034 1.29567 0.98326 0.79029 0.92954 1.84581 1.28962 1.25440 1.69129 1.22672 0.82256 0.95699 1.18687 1.15949 0.84341 0.81250 0.76634 1.90833 1.15906 1.82255 1.53368 1.49842 1.08286 1.07654 1.71227 1.22842 0.93813 0.77692 1.02017 1.22506 0.95215 0.94729 1.02617 1.22991 1.01037 1.00659 0.88371 1.22071 0.89406 1.00077 1.06695 0.83896 1.19871 0.86491 0.82879 0.76668 1.90613 1.83619 1.21768 1.50686 1.50284 1.08991 1.12248 1.65354 1.23208 0.80228 0.97175 0.99928 1.20615 0.94374 0.91897 0.95296 1.22148 1.10335 0.93865 1.37630 0.92767 1.27076 1.01798 0.97849 0.95359 1.70869 1.12481 1.39568 1.33802 0.82910 0.73010 0.74396 0.75790 1.19742 1.20624 1.21189 1.23549 0.99291 0.77506 1.00398 1.22561 0.77765 0.94463 1.01038 0.89238 0.89013 0.89617 0.68029 0.87532 0.87346 0.88167 0.84067 0.91972 0.90082 0.95026 0.92780 0.89995 0.91076 0.89272 0.89872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.47 9.87 71.24 0.70 -0.76 16 2 C 0.08 1.71 7.16 41.83 0.30 2.00 16 3 N -0.52 -10.63 11.26 -303.11 -3.41 -14.04 16 4 C 0.23 3.32 13.21 130.42 1.72 5.04 16 5 O -0.19 -4.04 9.37 -7.15 -0.07 -4.11 16 6 C -0.14 -3.35 7.11 24.05 0.17 -3.17 16 7 C 0.63 16.48 8.02 86.46 0.69 17.17 16 8 O -0.54 -16.06 15.52 -4.31 -0.07 -16.12 16 9 N -0.64 -14.83 3.61 -852.05 -3.08 -17.91 16 10 C 0.16 2.92 8.85 86.24 0.76 3.68 16 11 C -0.15 -3.12 3.04 -52.39 -0.16 -3.27 16 12 C -0.09 -1.76 10.24 30.42 0.31 -1.45 16 13 C -0.16 -3.83 5.94 -11.71 -0.07 -3.90 16 14 H 0.14 3.00 8.14 -2.39 -0.02 2.98 16 15 C 0.55 18.34 7.84 87.66 0.69 19.03 16 16 O -0.58 -22.25 15.86 -3.04 -0.05 -22.30 16 17 N -0.64 -23.08 3.61 -836.83 -3.02 -26.10 16 18 C 0.12 4.58 8.39 86.48 0.73 5.30 16 19 C 0.00 -0.11 3.09 -10.89 -0.03 -0.15 16 20 C -0.60 -29.79 8.77 25.60 0.22 -29.57 16 21 H 0.05 2.67 7.81 -2.91 -0.02 2.64 16 22 C -0.02 -1.07 5.46 84.65 0.46 -0.61 16 23 N -0.93 -50.88 13.65 21.45 0.29 -50.59 16 24 Si 1.12 45.59 29.90 68.60 2.05 47.65 16 25 H -0.27 -10.34 7.11 99.48 0.71 -9.63 16 26 H -0.28 -11.14 7.11 99.48 0.71 -10.43 16 27 H -0.29 -11.60 7.11 99.48 0.71 -10.89 16 28 C 0.12 4.32 8.12 86.47 0.70 5.03 16 29 C 0.16 3.86 6.37 86.24 0.55 4.41 16 30 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 31 H 0.09 1.39 8.14 -2.38 -0.02 1.37 16 32 H 0.09 1.76 6.47 -2.39 -0.02 1.75 16 33 H 0.31 0.74 8.06 -2.91 -0.02 0.72 16 34 H 0.11 1.68 8.14 -2.38 -0.02 1.66 16 35 H 0.11 1.78 8.14 -2.39 -0.02 1.76 16 36 H 0.10 2.03 8.14 -2.39 -0.02 2.01 16 37 H 0.14 1.85 8.14 -2.39 -0.02 1.83 16 38 H 0.06 2.40 8.14 -2.38 -0.02 2.38 16 39 H 0.08 3.08 8.09 -2.39 -0.02 3.06 16 40 H 0.03 1.54 7.61 -2.39 -0.02 1.52 16 41 H 0.26 14.22 7.04 -92.71 -0.65 13.57 16 42 H 0.08 3.06 8.09 -2.39 -0.02 3.04 16 43 H 0.07 2.51 8.14 -2.39 -0.02 2.50 16 44 H 0.09 2.29 8.01 -2.38 -0.02 2.27 16 45 H 0.08 2.04 7.59 -2.39 -0.02 2.02 16 Total: -1.00 -68.66 387.62 1.55 -67.12 By element: Atomic # 1 Polarization: 16.48 SS G_CDS: 1.14 Total: 17.62 kcal Atomic # 6 Polarization: 11.03 SS G_CDS: 7.75 Total: 18.78 kcal Atomic # 7 Polarization: -99.42 SS G_CDS: -9.21 Total: -108.64 kcal Atomic # 8 Polarization: -42.35 SS G_CDS: -0.18 Total: -42.53 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 2.05 Total: 47.65 kcal Total: -68.66 1.55 -67.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270035715.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.498 kcal (2) G-P(sol) polarization free energy of solvation -68.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.117 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds