Wall clock time and date at job start Wed Apr 1 2020 03:32:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 C 1.53000 * 108.58089 * 2 1 4 4 C 1.50701 * 109.47050 * 296.36836 * 3 2 1 5 5 O 1.21287 * 119.99752 * 358.59132 * 4 3 2 6 6 N 1.34772 * 120.00005 * 178.59349 * 4 3 2 7 7 C 1.46500 * 119.99757 * 179.97438 * 6 4 3 8 8 C 1.53001 * 109.46914 * 175.06384 * 7 6 4 9 9 N 1.46494 * 112.85060 * 287.14536 * 8 7 6 10 10 C 1.36933 * 120.00396 * 294.91128 * 9 8 7 11 11 H 1.08004 * 119.99669 * 4.93879 * 10 9 8 12 12 C 1.38816 * 120.00337 * 184.94673 * 10 9 8 13 13 N 1.31613 * 120.00037 * 359.97438 * 12 10 9 14 14 Si 1.86805 * 119.99839 * 179.97438 * 12 10 9 15 15 H 1.48498 * 109.46874 * 89.99746 * 14 12 10 16 16 H 1.48506 * 109.46777 * 209.99480 * 14 12 10 17 17 H 1.48495 * 109.47043 * 329.99278 * 14 12 10 18 18 C 1.53783 * 113.61561 * 155.94743 * 8 7 6 19 19 C 1.53946 * 87.02206 * 220.05063 * 18 8 7 20 20 C 1.53779 * 87.11153 * 25.36259 * 19 18 8 21 21 C 1.53263 * 108.66352 * 117.78056 * 2 1 3 22 22 C 1.55559 * 106.21085 * 148.61232 * 21 2 1 23 23 S 1.83902 * 99.68743 * 323.08144 * 22 21 2 24 24 O 1.42095 * 111.46777 * 144.06488 * 23 22 21 25 25 O 1.42106 * 111.46304 * 284.11899 * 23 22 21 26 26 N 1.46443 * 108.64745 * 241.99818 * 2 1 3 27 27 H 1.08998 * 109.46772 * 173.14609 * 1 2 3 28 28 H 1.08995 * 109.46859 * 293.14468 * 1 2 3 29 29 H 1.08997 * 109.46374 * 53.14447 * 1 2 3 30 30 H 1.09004 * 109.47350 * 56.36438 * 3 2 1 31 31 H 1.08996 * 109.46874 * 176.36551 * 3 2 1 32 32 H 0.96997 * 120.00070 * 359.97438 * 6 4 3 33 33 H 1.08998 * 109.47473 * 295.06284 * 7 6 4 34 34 H 1.08999 * 109.47184 * 55.06618 * 7 6 4 35 35 H 0.97006 * 120.00315 * 114.91248 * 9 8 7 36 36 H 0.96993 * 120.00033 * 180.02562 * 13 12 10 37 37 H 1.09003 * 113.61685 * 334.57278 * 18 8 7 38 38 H 1.09006 * 113.61235 * 105.47189 * 18 8 7 39 39 H 1.09004 * 113.53462 * 270.81169 * 19 18 8 40 40 H 1.08998 * 113.66678 * 139.93507 * 19 18 8 41 41 H 1.09002 * 113.61583 * 220.08878 * 20 19 18 42 42 H 1.08996 * 113.61106 * 89.19259 * 20 19 18 43 43 H 1.09000 * 110.07907 * 29.44676 * 21 2 1 44 44 H 1.08997 * 110.15443 * 267.81737 * 21 2 1 45 45 H 1.09002 * 111.37110 * 205.45639 * 22 21 2 46 46 H 1.08995 * 111.36944 * 80.70792 * 22 21 2 47 47 H 0.97006 * 126.08450 * 57.21133 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0176 1.4503 0.0000 4 6 1.5795 2.1275 -1.2730 5 8 0.9624 1.5037 -2.1103 6 7 1.8736 3.4262 -1.4810 7 6 1.4482 4.0843 -2.7188 8 6 1.7963 5.5726 -2.6507 9 7 0.9285 6.3186 -1.7361 10 6 -0.4075 6.4438 -2.0091 11 1 -0.8366 5.9267 -2.8547 12 6 -1.2103 7.2353 -1.1992 13 7 -0.6875 7.8650 -0.1686 14 14 -3.0327 7.4065 -1.5722 15 1 -3.7861 6.3450 -0.8575 16 1 -3.5071 8.7395 -1.1210 17 1 -3.2535 7.2714 -3.0344 18 6 1.9495 6.2333 -4.0309 19 6 3.1458 7.0020 -3.4411 20 6 3.2947 5.8456 -2.4383 21 6 2.0206 -0.6768 1.2847 22 6 3.3676 -1.3667 0.9251 23 16 2.9802 -1.9313 -0.7817 24 8 4.1179 -1.8455 -1.6287 25 8 2.1324 -3.0718 -0.7722 26 7 1.9983 -0.6515 -1.2251 27 1 -0.3633 -1.0203 -0.1226 28 1 -0.3633 0.4039 0.9449 29 1 -0.3632 0.6164 -0.8223 30 1 1.5939 1.9761 0.8556 31 1 3.1055 1.4678 0.0651 32 1 2.3669 3.9251 -0.8113 33 1 1.9606 3.6298 -3.5667 34 1 0.3712 3.9683 -2.8404 35 1 1.3002 6.7239 -0.9370 36 1 -1.2485 8.4178 0.3976 37 1 2.2258 5.5350 -4.8210 38 1 1.1102 6.8729 -4.3044 39 1 2.8689 7.9489 -2.9776 40 1 3.9872 7.0956 -4.1277 41 1 3.5400 6.1727 -1.4279 42 1 3.9396 5.0413 -2.7922 43 1 1.2957 -1.4203 1.6162 44 1 2.1777 0.0678 2.0650 45 1 3.5710 -2.2095 1.5856 46 1 4.1925 -0.6542 0.9300 47 1 1.7788 -0.3875 -2.1324 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001273185676.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:32:23 Heat of formation + Delta-G solvation = -66.640181 kcal Electronic energy + Delta-G solvation = -29582.778317 eV Core-core repulsion = 25507.964137 eV Total energy + Delta-G solvation = -4074.814180 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.156 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.25066 -38.95973 -37.64431 -37.10037 -36.00641 -34.00278 -33.32079 -31.97084 -30.85321 -30.07790 -28.64050 -26.58527 -25.33642 -24.41098 -23.81163 -21.88119 -20.83742 -20.11233 -19.66051 -18.28189 -17.67872 -17.30008 -17.03711 -16.37552 -15.98408 -15.65882 -15.37696 -15.19854 -14.76484 -14.61491 -14.33266 -14.08784 -13.78352 -13.60041 -13.40266 -13.27577 -12.98752 -12.70651 -12.47683 -12.26769 -12.13412 -12.03324 -12.01464 -11.84947 -11.64290 -11.37265 -11.26634 -11.07974 -11.06580 -10.89139 -10.75552 -10.41213 -10.24064 -10.14932 -9.73861 -9.59439 -9.53883 -9.42235 -8.93909 -8.59165 -7.09197 -5.87683 -3.17225 0.08083 2.46456 2.88854 3.37791 3.40693 3.44368 3.44768 3.45931 3.70396 3.94826 4.22482 4.39099 4.49373 4.67516 4.85451 4.97372 5.06885 5.12425 5.18438 5.22255 5.23159 5.27893 5.38683 5.43637 5.47448 5.50681 5.55493 5.70395 5.86658 5.97998 6.03879 6.08475 6.15417 6.28034 6.35435 6.38796 6.49306 6.68731 6.83881 6.91957 7.01313 7.27702 7.64885 7.85990 8.30944 8.53754 9.42495 9.96129 10.31116 11.34354 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.014597 B = 0.002954 C = 0.002657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1917.720977 B = 9477.157147 C =10536.048203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.160 3.840 3 C -0.152 4.152 4 C 0.515 3.485 5 O -0.547 6.547 6 N -0.706 5.706 7 C 0.118 3.882 8 C 0.174 3.826 9 N -0.699 5.699 10 C -0.236 4.236 11 H 0.071 0.929 12 C -0.008 4.008 13 N -0.931 5.931 14 Si 0.904 3.096 15 H -0.290 1.290 16 H -0.292 1.292 17 H -0.281 1.281 18 C -0.150 4.150 19 C -0.128 4.128 20 C -0.145 4.145 21 C -0.117 4.117 22 C -0.596 4.596 23 S 2.563 3.437 24 O -0.965 6.965 25 O -0.957 6.957 26 N -1.075 6.075 27 H 0.063 0.937 28 H 0.061 0.939 29 H 0.089 0.911 30 H 0.105 0.895 31 H 0.095 0.905 32 H 0.399 0.601 33 H 0.053 0.947 34 H 0.072 0.928 35 H 0.386 0.614 36 H 0.255 0.745 37 H 0.067 0.933 38 H 0.075 0.925 39 H 0.081 0.919 40 H 0.054 0.946 41 H 0.064 0.936 42 H 0.077 0.923 43 H 0.101 0.899 44 H 0.113 0.887 45 H 0.139 0.861 46 H 0.141 0.859 47 H 0.444 0.556 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.611 -14.324 4.448 18.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.069 3.931 3 C -0.194 4.194 4 C 0.301 3.699 5 O -0.426 6.426 6 N -0.354 5.354 7 C -0.008 4.008 8 C 0.080 3.920 9 N -0.340 5.340 10 C -0.367 4.367 11 H 0.088 0.912 12 C -0.204 4.204 13 N -0.579 5.579 14 Si 0.735 3.265 15 H -0.217 1.217 16 H -0.218 1.218 17 H -0.207 1.207 18 C -0.191 4.191 19 C -0.166 4.166 20 C -0.183 4.183 21 C -0.156 4.156 22 C -0.726 4.726 23 S 2.657 3.343 24 O -0.954 6.954 25 O -0.946 6.946 26 N -0.846 5.846 27 H 0.082 0.918 28 H 0.080 0.920 29 H 0.108 0.892 30 H 0.123 0.877 31 H 0.113 0.887 32 H 0.232 0.768 33 H 0.072 0.928 34 H 0.091 0.909 35 H 0.221 0.779 36 H 0.065 0.935 37 H 0.086 0.914 38 H 0.094 0.906 39 H 0.100 0.900 40 H 0.072 0.928 41 H 0.083 0.917 42 H 0.095 0.905 43 H 0.119 0.881 44 H 0.132 0.868 45 H 0.157 0.843 46 H 0.159 0.841 47 H 0.290 0.710 Dipole moment (debyes) X Y Z Total from point charges 10.274 -15.567 3.266 18.936 hybrid contribution -0.881 1.299 0.660 1.703 sum 9.393 -14.268 3.926 17.528 Atomic orbital electron populations 1.22408 0.92547 1.03655 1.03757 1.20249 0.97077 0.91796 0.84004 1.22258 1.03076 0.96011 0.98035 1.20320 0.79286 0.82133 0.88133 1.90529 1.41103 1.64369 1.46595 1.45833 1.57034 1.10441 1.22109 1.21907 1.00777 0.93547 0.84582 1.20804 0.89688 0.89319 0.92144 1.42058 1.05005 1.62087 1.24822 1.19098 0.84316 1.23149 1.10098 0.91152 1.24709 0.98107 0.99586 0.98035 1.69646 1.34897 1.35088 1.18292 0.86233 0.85444 0.77011 0.77770 1.21723 1.21794 1.20681 1.23343 0.98800 0.99701 0.97238 1.22655 0.97712 0.98031 0.98167 1.23133 0.96625 0.98786 0.99789 1.22550 0.93655 1.01923 0.97474 1.30797 1.05768 1.11992 1.24052 1.06535 0.75089 0.74700 0.77943 1.93608 1.51824 1.86606 1.63368 1.93648 1.65812 1.49014 1.86131 1.55150 1.66774 1.49410 1.13305 0.91766 0.91981 0.89219 0.87692 0.88693 0.76752 0.92846 0.90944 0.77944 0.93487 0.91421 0.90637 0.89994 0.92758 0.91699 0.90453 0.88096 0.86827 0.84296 0.84092 0.70964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.77 8.29 37.16 0.31 -1.46 16 2 C 0.16 1.48 0.83 -131.71 -0.11 1.37 16 3 C -0.15 -1.42 4.63 -27.88 -0.13 -1.55 16 4 C 0.52 7.13 7.24 -10.99 -0.08 7.05 16 5 O -0.55 -9.02 11.85 5.55 0.07 -8.95 16 6 N -0.71 -10.15 5.41 -60.29 -0.33 -10.48 16 7 C 0.12 1.99 5.21 -4.04 -0.02 1.97 16 8 C 0.17 3.02 0.89 -131.01 -0.12 2.91 16 9 N -0.70 -15.43 5.19 -46.48 -0.24 -15.67 16 10 C -0.24 -6.02 9.04 -15.06 -0.14 -6.16 16 11 H 0.07 1.81 7.57 -52.48 -0.40 1.41 16 12 C -0.01 -0.22 5.50 -17.43 -0.10 -0.32 16 13 N -0.93 -26.34 13.06 55.49 0.72 -25.62 16 14 Si 0.90 21.68 29.55 -169.99 -5.02 16.65 16 15 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 16 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 17 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 18 C -0.15 -2.51 7.29 -25.83 -0.19 -2.70 16 19 C -0.13 -1.94 8.00 -25.83 -0.21 -2.15 16 20 C -0.15 -2.09 6.72 -25.92 -0.17 -2.26 16 21 C -0.12 -0.68 5.54 -25.23 -0.14 -0.82 16 22 C -0.60 -3.22 7.65 38.52 0.29 -2.93 16 23 S 2.56 26.04 6.47 -107.50 -0.70 25.34 16 24 O -0.96 -13.20 18.14 -57.37 -1.04 -14.24 16 25 O -0.96 -12.80 18.14 -57.37 -1.04 -13.85 16 26 N -1.07 -11.80 5.61 0.62 0.00 -11.79 16 27 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.06 0.56 8.11 -51.93 -0.42 0.14 16 29 H 0.09 1.24 5.70 -51.93 -0.30 0.95 16 30 H 0.10 0.82 8.13 -51.93 -0.42 0.40 16 31 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 32 H 0.40 5.12 8.03 -40.82 -0.33 4.80 16 33 H 0.05 0.86 7.91 -51.93 -0.41 0.45 16 34 H 0.07 1.46 7.49 -51.93 -0.39 1.07 16 35 H 0.39 9.12 7.86 -40.82 -0.32 8.80 16 36 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 37 H 0.07 1.00 7.94 -51.93 -0.41 0.59 16 38 H 0.07 1.44 7.87 -51.93 -0.41 1.03 16 39 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 40 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.06 0.92 8.09 -51.93 -0.42 0.50 16 42 H 0.08 0.98 8.10 -51.93 -0.42 0.56 16 43 H 0.10 0.52 7.83 -51.93 -0.41 0.11 16 44 H 0.11 0.42 7.76 -51.93 -0.40 0.02 16 45 H 0.14 0.45 8.14 -51.93 -0.42 0.03 16 46 H 0.14 0.55 8.14 -51.93 -0.42 0.13 16 47 H 0.44 5.61 6.85 -40.36 -0.28 5.33 16 LS Contribution 383.99 15.07 5.79 5.79 Total: -1.00 -34.58 383.99 -9.99 -44.57 By element: Atomic # 1 Polarization: 22.70 SS G_CDS: -7.40 Total: 15.30 kcal Atomic # 6 Polarization: -6.26 SS G_CDS: -0.79 Total: -7.05 kcal Atomic # 7 Polarization: -63.72 SS G_CDS: 0.16 Total: -63.56 kcal Atomic # 8 Polarization: -35.03 SS G_CDS: -2.02 Total: -37.04 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.65 kcal Atomic # 16 Polarization: 26.04 SS G_CDS: -0.70 Total: 25.34 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -34.58 -9.99 -44.57 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273185676.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.070 kcal (2) G-P(sol) polarization free energy of solvation -34.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds