Wall clock time and date at job start Wed Apr 1 2020 03:32:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 C 1.53000 * 108.58089 * 2 1 4 4 C 1.50701 * 109.47050 * 296.36836 * 3 2 1 5 5 O 1.21287 * 119.99752 * 358.59132 * 4 3 2 6 6 N 1.34772 * 120.00005 * 178.59349 * 4 3 2 7 7 C 1.46500 * 119.99757 * 179.97438 * 6 4 3 8 8 C 1.53001 * 109.46914 * 175.06384 * 7 6 4 9 9 N 1.46494 * 112.85060 * 287.14536 * 8 7 6 10 10 C 1.36933 * 120.00396 * 294.91128 * 9 8 7 11 11 H 1.08004 * 119.99669 * 4.93879 * 10 9 8 12 12 C 1.38816 * 120.00337 * 184.94673 * 10 9 8 13 13 N 1.31613 * 120.00037 * 359.97438 * 12 10 9 14 14 Si 1.86805 * 119.99839 * 179.97438 * 12 10 9 15 15 H 1.48498 * 109.46874 * 89.99746 * 14 12 10 16 16 H 1.48506 * 109.46777 * 209.99480 * 14 12 10 17 17 H 1.48495 * 109.47043 * 329.99278 * 14 12 10 18 18 C 1.53783 * 113.61561 * 155.94743 * 8 7 6 19 19 C 1.53946 * 87.02206 * 220.05063 * 18 8 7 20 20 C 1.53779 * 87.11153 * 25.36259 * 19 18 8 21 21 C 1.53263 * 108.66352 * 117.78056 * 2 1 3 22 22 C 1.55559 * 106.21085 * 148.61232 * 21 2 1 23 23 S 1.83902 * 99.68743 * 323.08144 * 22 21 2 24 24 O 1.42095 * 111.46777 * 144.06488 * 23 22 21 25 25 O 1.42106 * 111.46304 * 284.11899 * 23 22 21 26 26 N 1.46443 * 108.64745 * 241.99818 * 2 1 3 27 27 H 1.08998 * 109.46772 * 173.14609 * 1 2 3 28 28 H 1.08995 * 109.46859 * 293.14468 * 1 2 3 29 29 H 1.08997 * 109.46374 * 53.14447 * 1 2 3 30 30 H 1.09004 * 109.47350 * 56.36438 * 3 2 1 31 31 H 1.08996 * 109.46874 * 176.36551 * 3 2 1 32 32 H 0.96997 * 120.00070 * 359.97438 * 6 4 3 33 33 H 1.08998 * 109.47473 * 295.06284 * 7 6 4 34 34 H 1.08999 * 109.47184 * 55.06618 * 7 6 4 35 35 H 0.97006 * 120.00315 * 114.91248 * 9 8 7 36 36 H 0.96993 * 120.00033 * 180.02562 * 13 12 10 37 37 H 1.09003 * 113.61685 * 334.57278 * 18 8 7 38 38 H 1.09006 * 113.61235 * 105.47189 * 18 8 7 39 39 H 1.09004 * 113.53462 * 270.81169 * 19 18 8 40 40 H 1.08998 * 113.66678 * 139.93507 * 19 18 8 41 41 H 1.09002 * 113.61583 * 220.08878 * 20 19 18 42 42 H 1.08996 * 113.61106 * 89.19259 * 20 19 18 43 43 H 1.09000 * 110.07907 * 29.44676 * 21 2 1 44 44 H 1.08997 * 110.15443 * 267.81737 * 21 2 1 45 45 H 1.09002 * 111.37110 * 205.45639 * 22 21 2 46 46 H 1.08995 * 111.36944 * 80.70792 * 22 21 2 47 47 H 0.97006 * 126.08450 * 57.21133 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0176 1.4503 0.0000 4 6 1.5795 2.1275 -1.2730 5 8 0.9624 1.5037 -2.1103 6 7 1.8736 3.4262 -1.4810 7 6 1.4482 4.0843 -2.7188 8 6 1.7963 5.5726 -2.6507 9 7 0.9285 6.3186 -1.7361 10 6 -0.4075 6.4438 -2.0091 11 1 -0.8366 5.9267 -2.8547 12 6 -1.2103 7.2353 -1.1992 13 7 -0.6875 7.8650 -0.1686 14 14 -3.0327 7.4065 -1.5722 15 1 -3.7861 6.3450 -0.8575 16 1 -3.5071 8.7395 -1.1210 17 1 -3.2535 7.2714 -3.0344 18 6 1.9495 6.2333 -4.0309 19 6 3.1458 7.0020 -3.4411 20 6 3.2947 5.8456 -2.4383 21 6 2.0206 -0.6768 1.2847 22 6 3.3676 -1.3667 0.9251 23 16 2.9802 -1.9313 -0.7817 24 8 4.1179 -1.8455 -1.6287 25 8 2.1324 -3.0718 -0.7722 26 7 1.9983 -0.6515 -1.2251 27 1 -0.3633 -1.0203 -0.1226 28 1 -0.3633 0.4039 0.9449 29 1 -0.3632 0.6164 -0.8223 30 1 1.5939 1.9761 0.8556 31 1 3.1055 1.4678 0.0651 32 1 2.3669 3.9251 -0.8113 33 1 1.9606 3.6298 -3.5667 34 1 0.3712 3.9683 -2.8404 35 1 1.3002 6.7239 -0.9370 36 1 -1.2485 8.4178 0.3976 37 1 2.2258 5.5350 -4.8210 38 1 1.1102 6.8729 -4.3044 39 1 2.8689 7.9489 -2.9776 40 1 3.9872 7.0956 -4.1277 41 1 3.5400 6.1727 -1.4279 42 1 3.9396 5.0413 -2.7922 43 1 1.2957 -1.4203 1.6162 44 1 2.1777 0.0678 2.0650 45 1 3.5710 -2.2095 1.5856 46 1 4.1925 -0.6542 0.9300 47 1 1.7788 -0.3875 -2.1324 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001273185676.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:32:22 Heat of formation + Delta-G solvation = -95.735603 kcal Electronic energy + Delta-G solvation = -29584.039989 eV Core-core repulsion = 25507.964137 eV Total energy + Delta-G solvation = -4076.075852 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.156 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.26137 -40.21064 -38.57035 -37.97596 -36.87757 -35.23286 -35.17594 -32.57553 -32.01101 -31.53554 -29.66851 -27.76685 -26.72099 -25.67361 -24.92902 -23.16751 -21.73800 -21.06741 -20.42914 -19.70559 -19.11879 -18.46963 -18.10343 -17.28635 -16.95139 -16.73000 -16.47769 -16.37802 -16.00839 -15.70026 -15.57340 -15.15243 -15.12835 -14.69185 -14.38183 -14.22211 -14.05267 -13.81964 -13.58579 -13.18897 -13.14755 -13.03782 -13.03308 -12.94357 -12.86507 -12.60498 -12.58108 -12.49051 -12.13825 -12.09593 -11.98237 -11.84445 -11.58311 -11.42741 -11.37042 -10.97544 -10.80477 -10.51653 -10.30092 -9.83971 -8.96689 -7.93902 -5.19769 -0.61979 1.44431 1.46461 1.52911 1.72433 1.84922 2.41686 2.54847 2.73543 3.10666 3.37641 3.39875 3.60812 3.71288 3.76911 3.82917 3.94373 4.02823 4.08072 4.13362 4.23384 4.37025 4.53019 4.67239 4.70414 4.73964 4.75710 4.85982 4.89290 4.90003 4.93121 4.94959 5.03577 5.09475 5.13045 5.32047 5.32870 5.44495 5.50265 5.58228 5.68000 5.74132 6.30784 6.32510 6.77501 7.37244 7.47594 8.11725 8.35449 9.28517 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.014597 B = 0.002954 C = 0.002657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1917.720977 B = 9477.157147 C =10536.048203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.153 3.847 3 C -0.147 4.147 4 C 0.504 3.496 5 O -0.580 6.580 6 N -0.705 5.705 7 C 0.130 3.870 8 C 0.160 3.840 9 N -0.704 5.704 10 C -0.221 4.221 11 H 0.062 0.938 12 C -0.063 4.063 13 N -0.961 5.961 14 Si 0.954 3.046 15 H -0.292 1.292 16 H -0.295 1.295 17 H -0.278 1.278 18 C -0.153 4.153 19 C -0.123 4.123 20 C -0.124 4.124 21 C -0.115 4.115 22 C -0.549 4.549 23 S 2.547 3.453 24 O -1.010 7.010 25 O -1.003 7.003 26 N -1.085 6.085 27 H 0.057 0.943 28 H 0.081 0.919 29 H 0.050 0.950 30 H 0.128 0.872 31 H 0.129 0.871 32 H 0.408 0.592 33 H 0.063 0.937 34 H 0.029 0.971 35 H 0.378 0.622 36 H 0.250 0.750 37 H 0.091 0.909 38 H 0.042 0.958 39 H 0.058 0.942 40 H 0.083 0.917 41 H 0.071 0.929 42 H 0.106 0.894 43 H 0.110 0.890 44 H 0.153 0.847 45 H 0.173 0.827 46 H 0.171 0.829 47 H 0.433 0.567 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.932 -14.877 6.604 20.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.062 3.938 3 C -0.188 4.188 4 C 0.292 3.708 5 O -0.461 6.461 6 N -0.355 5.355 7 C 0.003 3.997 8 C 0.068 3.932 9 N -0.343 5.343 10 C -0.354 4.354 11 H 0.080 0.920 12 C -0.256 4.256 13 N -0.611 5.611 14 Si 0.785 3.215 15 H -0.220 1.220 16 H -0.222 1.222 17 H -0.203 1.203 18 C -0.193 4.193 19 C -0.160 4.160 20 C -0.162 4.162 21 C -0.155 4.155 22 C -0.684 4.684 23 S 2.647 3.353 24 O -1.000 7.000 25 O -0.992 6.992 26 N -0.854 5.854 27 H 0.076 0.924 28 H 0.100 0.900 29 H 0.069 0.931 30 H 0.146 0.854 31 H 0.147 0.853 32 H 0.244 0.756 33 H 0.081 0.919 34 H 0.047 0.953 35 H 0.211 0.789 36 H 0.059 0.941 37 H 0.109 0.891 38 H 0.061 0.939 39 H 0.077 0.923 40 H 0.102 0.898 41 H 0.089 0.911 42 H 0.124 0.876 43 H 0.129 0.871 44 H 0.171 0.829 45 H 0.191 0.809 46 H 0.189 0.811 47 H 0.276 0.724 Dipole moment (debyes) X Y Z Total from point charges 12.611 -16.166 5.363 21.193 hybrid contribution -1.608 1.432 -0.058 2.154 sum 11.003 -14.734 5.306 19.140 Atomic orbital electron populations 1.22379 0.94332 1.02516 1.03169 1.20531 0.95915 0.92386 0.84938 1.22377 1.05255 0.95379 0.95756 1.21270 0.78413 0.81682 0.89421 1.90535 1.42344 1.65007 1.48186 1.45811 1.57308 1.10877 1.21519 1.21567 0.98226 0.93433 0.86446 1.21077 0.91370 0.88791 0.91925 1.42080 1.04381 1.62451 1.25419 1.19258 0.86030 1.21293 1.08778 0.91996 1.25259 1.01078 1.00594 0.98687 1.69750 1.35558 1.36456 1.19358 0.85432 0.82144 0.76420 0.77535 1.21976 1.22182 1.20333 1.23384 0.98624 0.99895 0.97436 1.22584 0.97735 0.97071 0.98615 1.23068 0.93994 0.98968 1.00133 1.22713 0.93707 1.03045 0.95989 1.30618 1.06616 1.13488 1.17724 1.06827 0.73998 0.74055 0.80427 1.93543 1.52717 1.86942 1.66780 1.93585 1.66771 1.51149 1.87739 1.55190 1.67222 1.49493 1.13454 0.92419 0.89995 0.93065 0.85354 0.85271 0.75620 0.91865 0.95265 0.78864 0.94143 0.89092 0.93872 0.92306 0.89831 0.91062 0.87583 0.87140 0.82927 0.80889 0.81101 0.72444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.42 8.29 71.99 0.60 -2.83 16 2 C 0.15 2.45 0.83 3.71 0.00 2.45 16 3 C -0.15 -2.22 4.63 29.85 0.14 -2.09 16 4 C 0.50 13.41 7.24 87.66 0.63 14.05 16 5 O -0.58 -19.62 11.85 -3.05 -0.04 -19.65 16 6 N -0.71 -19.38 5.41 -463.06 -2.50 -21.88 16 7 C 0.13 4.37 5.21 86.38 0.45 4.82 16 8 C 0.16 5.45 0.89 4.13 0.00 5.45 16 9 N -0.70 -31.26 5.19 -300.97 -1.56 -32.82 16 10 C -0.22 -11.53 9.04 84.04 0.76 -10.77 16 11 H 0.06 3.28 7.57 -2.91 -0.02 3.26 16 12 C -0.06 -3.46 5.50 84.86 0.47 -3.00 16 13 N -0.96 -55.13 13.06 21.65 0.28 -54.85 16 14 Si 0.95 45.41 29.55 68.60 2.03 47.44 16 15 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 16 H -0.30 -14.13 7.11 99.48 0.71 -13.42 16 17 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 18 C -0.15 -5.00 7.29 31.18 0.23 -4.78 16 19 C -0.12 -3.47 8.00 31.18 0.25 -3.22 16 20 C -0.12 -3.21 6.72 31.12 0.21 -3.01 16 21 C -0.12 -0.76 5.54 31.56 0.17 -0.58 16 22 C -0.55 -3.06 7.65 72.86 0.56 -2.51 16 23 S 2.55 49.35 6.47 -56.49 -0.37 48.98 16 24 O -1.01 -27.64 18.14 -127.81 -2.32 -29.96 16 25 O -1.00 -27.24 18.14 -127.81 -2.32 -29.55 16 26 N -1.09 -23.35 5.61 -151.94 -0.85 -24.20 16 27 H 0.06 1.22 8.14 -2.39 -0.02 1.21 16 28 H 0.08 1.31 8.11 -2.39 -0.02 1.29 16 29 H 0.05 1.47 5.70 -2.39 -0.01 1.46 16 30 H 0.13 1.41 8.13 -2.39 -0.02 1.39 16 31 H 0.13 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.41 9.53 8.03 -92.71 -0.74 8.78 16 33 H 0.06 1.98 7.91 -2.39 -0.02 1.97 16 34 H 0.03 1.22 7.49 -2.39 -0.02 1.20 16 35 H 0.38 17.92 7.86 -92.70 -0.73 17.19 16 36 H 0.25 14.09 8.31 -92.71 -0.77 13.32 16 37 H 0.09 2.53 7.94 -2.39 -0.02 2.51 16 38 H 0.04 1.67 7.87 -2.38 -0.02 1.65 16 39 H 0.06 1.95 8.14 -2.38 -0.02 1.93 16 40 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 41 H 0.07 1.81 8.09 -2.39 -0.02 1.79 16 42 H 0.11 2.22 8.10 -2.39 -0.02 2.20 16 43 H 0.11 0.62 7.83 -2.39 -0.02 0.61 16 44 H 0.15 -0.01 7.76 -2.39 -0.02 -0.02 16 45 H 0.17 0.02 8.14 -2.39 -0.02 0.00 16 46 H 0.17 0.15 8.14 -2.39 -0.02 0.13 16 47 H 0.43 11.49 6.85 -92.99 -0.64 10.85 16 Total: -1.00 -81.30 383.99 -4.28 -85.58 By element: Atomic # 1 Polarization: 38.02 SS G_CDS: -1.10 Total: 36.92 kcal Atomic # 6 Polarization: -10.47 SS G_CDS: 4.47 Total: -6.00 kcal Atomic # 7 Polarization: -129.11 SS G_CDS: -4.64 Total: -133.75 kcal Atomic # 8 Polarization: -74.50 SS G_CDS: -4.67 Total: -79.17 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 2.03 Total: 47.44 kcal Atomic # 16 Polarization: 49.35 SS G_CDS: -0.37 Total: 48.98 kcal Total: -81.30 -4.28 -85.58 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273185676.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.156 kcal (2) G-P(sol) polarization free energy of solvation -81.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds