Wall clock time and date at job start Wed Apr 1 2020 03:47:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.35245 * 126.07737 * 2 1 4 4 O 1.34310 * 107.20967 * 179.97438 * 3 2 1 5 5 C 1.34551 * 107.65739 * 359.97438 * 4 3 2 6 6 C 1.47449 * 125.70745 * 179.97438 * 5 4 3 7 7 O 1.21602 * 120.00144 * 180.02562 * 6 5 4 8 8 N 1.34780 * 120.00245 * 0.02562 * 6 5 4 9 9 C 1.46500 * 120.00390 * 180.02562 * 8 6 5 10 10 C 1.54412 * 129.01250 * 180.02562 * 9 8 6 11 11 C 1.54419 * 78.89086 * 180.64334 * 10 9 8 12 12 C 1.50703 * 129.01419 * 180.64405 * 11 10 9 13 13 O 1.21281 * 119.99538 * 359.97438 * 12 11 10 14 14 N 1.34769 * 119.99988 * 180.02562 * 12 11 10 15 15 C 1.47584 * 134.49063 * 180.02562 * 14 12 11 16 16 C 1.53947 * 86.11565 * 204.63541 * 15 14 12 17 17 C 1.50699 * 113.73968 * 222.04272 * 16 15 14 18 18 H 1.07998 * 120.00165 * 0.02562 * 17 16 15 19 19 C 1.37878 * 119.99722 * 179.97438 * 17 16 15 20 20 N 1.31513 * 119.99969 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99800 * 180.02562 * 19 17 16 22 22 H 1.48507 * 109.46673 * 90.00806 * 21 19 17 23 23 H 1.48502 * 109.47065 * 210.00473 * 21 19 17 24 24 H 1.48489 * 109.47475 * 330.00611 * 21 19 17 25 25 C 1.47577 * 134.49641 * 359.97438 * 14 12 11 26 26 C 1.54891 * 84.49409 * 43.15382 * 11 10 9 27 27 C 1.54885 * 84.49103 * 318.13307 * 11 10 9 28 28 N 1.31291 * 108.58619 * 0.26307 * 5 4 3 29 29 H 1.08997 * 109.47039 * 90.00114 * 1 2 3 30 30 H 1.09001 * 109.46843 * 210.00361 * 1 2 3 31 31 H 1.09003 * 109.46832 * 329.99889 * 1 2 3 32 32 H 1.08001 * 126.39369 * 359.97438 * 3 2 1 33 33 H 0.97004 * 119.99616 * 0.02562 * 8 6 5 34 34 H 1.08992 * 114.93459 * 68.15798 * 10 9 8 35 35 H 1.08998 * 114.98218 * 293.12337 * 10 9 8 36 36 H 1.09001 * 113.76908 * 90.33461 * 15 14 12 37 37 H 1.08997 * 113.76763 * 318.93723 * 15 14 12 38 38 H 1.08997 * 113.73914 * 90.73986 * 16 15 14 39 39 H 0.97000 * 119.99858 * 179.97438 * 20 19 17 40 40 H 1.08995 * 113.76947 * 41.05826 * 25 14 12 41 41 H 1.09001 * 113.87193 * 269.67722 * 25 14 12 42 42 H 1.09001 * 114.98080 * 69.39259 * 26 11 10 43 43 H 1.09003 * 114.97457 * 204.56822 * 26 11 10 44 44 H 1.09008 * 114.97367 * 155.43371 * 27 11 10 45 45 H 1.08998 * 114.98354 * 290.60293 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3035 1.0931 0.0000 4 8 3.5744 0.6587 0.0006 5 6 3.5460 -0.6865 0.0015 6 6 4.7249 -1.5721 0.0018 7 8 4.5784 -2.7793 0.0022 8 7 5.9648 -1.0438 0.0017 9 6 7.1361 -1.9237 0.0015 10 6 8.6338 -1.5483 0.0018 11 6 8.7136 -3.0904 -0.0159 12 6 9.9320 -3.9773 -0.0159 13 8 11.0403 -3.4851 -0.0010 14 7 9.7899 -5.3174 -0.0337 15 6 10.7277 -6.4569 -0.0388 16 6 9.5895 -7.2556 -0.6996 17 6 9.4369 -8.6542 -0.1596 18 1 10.0957 -9.0069 0.6202 19 6 8.4554 -9.4832 -0.6602 20 7 7.6529 -9.0535 -1.6093 21 14 8.2658 -11.2166 0.0096 22 1 7.3220 -11.2036 1.1562 23 1 7.7368 -12.1043 -1.0569 24 1 9.5875 -11.7199 0.4621 25 6 8.6341 -6.2348 -0.0547 26 6 7.5800 -2.9881 -1.0663 27 6 7.5621 -3.0129 1.0170 28 7 2.2930 -1.0786 -0.0042 29 1 -0.3633 0.0000 -1.0276 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3633 0.8900 0.5139 32 1 1.9782 2.1229 -0.0004 33 1 6.0816 -0.0808 0.0018 34 1 8.9900 -1.0803 0.9195 35 1 8.9862 -1.0596 -0.9065 36 1 10.9931 -6.8121 0.9569 37 1 11.5937 -6.3102 -0.6843 38 1 9.6022 -7.2184 -1.7888 39 1 6.9627 -9.6368 -1.9618 40 1 7.8279 -5.9107 -0.7128 41 1 8.2836 -6.5257 0.9356 42 1 7.8795 -2.5707 -2.0277 43 1 6.9465 -3.8715 -1.1473 44 1 6.9275 -3.8978 1.0660 45 1 7.8448 -2.6186 1.9930 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001275124702.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:47:47 Heat of formation + Delta-G solvation = 95.722220 kcal Electronic energy + Delta-G solvation = -29338.328590 eV Core-core repulsion = 25135.111021 eV Total energy + Delta-G solvation = -4203.217569 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -43.91132 -42.16155 -39.45776 -38.84348 -36.78469 -35.87652 -34.15952 -32.64153 -32.08355 -29.35587 -28.23847 -26.18560 -25.83406 -25.74002 -25.22500 -25.05689 -23.51342 -21.98134 -21.38900 -20.15462 -19.16197 -18.57477 -17.85887 -17.38189 -17.01459 -16.86837 -16.55382 -15.76835 -15.20584 -15.05307 -14.90413 -14.74277 -14.48176 -14.25719 -14.16420 -13.79147 -13.77924 -13.49454 -13.24761 -12.66609 -12.33282 -12.06840 -11.95528 -11.61458 -11.53333 -11.49602 -11.24902 -11.17889 -11.06696 -10.96952 -10.84778 -10.76098 -10.53002 -10.42698 -10.22443 -9.64557 -9.46825 -9.28165 -9.27055 -8.97532 -8.56002 -7.86881 -6.14586 -4.20466 0.44127 1.79044 1.83047 2.38995 2.75398 2.92383 3.27104 3.34541 3.36372 3.43863 3.71527 4.02815 4.22406 4.25953 4.28732 4.32830 4.36587 4.41703 4.64323 4.90136 4.98103 5.11841 5.14129 5.16188 5.27218 5.37926 5.50161 5.55321 5.57615 5.68199 5.74993 5.85631 5.94681 6.00632 6.10539 6.19712 6.26625 6.29965 6.39502 6.61802 6.69895 6.80194 6.84779 7.19469 7.57351 7.63370 7.82544 8.19064 8.46491 8.73672 8.82907 9.46443 10.94987 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.011630 B = 0.002491 C = 0.002095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2407.086587 B =11235.752122 C =13359.095013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.017 4.017 3 C -0.049 4.049 4 O -0.187 6.187 5 C 0.143 3.857 6 C 0.619 3.381 7 O -0.466 6.466 8 N -0.660 5.660 9 C 0.087 3.913 10 C -0.078 4.078 11 C -0.139 4.139 12 C 0.589 3.411 13 O -0.560 6.560 14 N -0.630 5.630 15 C 0.104 3.896 16 C 0.034 3.966 17 C -0.520 4.520 18 H 0.063 0.937 19 C 0.068 3.932 20 N -0.884 5.884 21 Si 0.895 3.105 22 H -0.279 1.279 23 H -0.286 1.286 24 H -0.273 1.273 25 C 0.104 3.896 26 C -0.099 4.099 27 C -0.096 4.096 28 N -0.407 5.407 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.225 0.775 33 H 0.413 0.587 34 H 0.084 0.916 35 H 0.085 0.915 36 H 0.076 0.924 37 H 0.063 0.937 38 H 0.065 0.935 39 H 0.264 0.736 40 H 0.065 0.935 41 H 0.076 0.924 42 H 0.080 0.920 43 H 0.094 0.906 44 H 0.093 0.907 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.180 23.135 2.999 25.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.141 4.141 3 C -0.121 4.121 4 O -0.072 6.072 5 C -0.063 4.063 6 C 0.400 3.600 7 O -0.335 6.335 8 N -0.311 5.311 9 C -0.001 4.001 10 C -0.117 4.117 11 C -0.143 4.143 12 C 0.376 3.624 13 O -0.440 6.440 14 N -0.362 5.362 15 C -0.017 4.017 16 C 0.015 3.985 17 C -0.558 4.558 18 H 0.081 0.919 19 C -0.136 4.136 20 N -0.521 5.521 21 Si 0.722 3.278 22 H -0.205 1.205 23 H -0.212 1.212 24 H -0.197 1.197 25 C -0.018 4.018 26 C -0.138 4.138 27 C -0.135 4.135 28 N -0.139 5.139 29 H 0.098 0.902 30 H 0.099 0.901 31 H 0.097 0.903 32 H 0.241 0.759 33 H 0.249 0.751 34 H 0.102 0.898 35 H 0.104 0.896 36 H 0.094 0.906 37 H 0.081 0.919 38 H 0.084 0.916 39 H 0.074 0.926 40 H 0.084 0.916 41 H 0.094 0.906 42 H 0.099 0.901 43 H 0.112 0.888 44 H 0.112 0.888 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -10.962 22.016 2.879 24.762 hybrid contribution -0.277 0.522 0.359 0.692 sum -11.238 22.539 3.238 25.392 Atomic orbital electron populations 1.20176 0.85631 1.03882 1.03418 1.22106 0.98776 0.87608 1.05579 1.25301 0.79899 1.01396 1.05549 1.84468 1.30874 1.23439 1.68415 1.25568 0.94959 0.78619 1.07189 1.15927 0.79947 0.85877 0.78266 1.90992 1.84058 1.12045 1.46447 1.44277 1.02645 1.09748 1.74421 1.23357 0.85043 0.92371 0.99339 1.23973 0.90139 0.94401 1.03149 1.23198 0.94387 0.96344 1.00353 1.17958 0.86982 0.80848 0.76582 1.90645 1.26157 1.74394 1.52804 1.50356 1.13678 1.02615 1.69589 1.23555 0.95375 0.82150 1.00621 1.20515 0.88278 0.92747 0.96981 1.20945 1.16850 0.96775 1.21271 0.91870 1.25025 0.95548 0.98511 0.94467 1.69942 1.18909 1.36757 1.26472 0.86550 0.78482 0.84061 0.78685 1.20507 1.21155 1.19740 1.23791 0.90544 0.86762 1.00700 1.24881 0.94378 0.98433 0.96137 1.24388 0.94402 0.98256 0.96460 1.70325 0.99573 1.31318 1.12722 0.90248 0.90071 0.90315 0.75858 0.75089 0.89768 0.89643 0.90618 0.91898 0.91648 0.92595 0.91631 0.90600 0.90111 0.88756 0.88807 0.90364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.40 10.43 36.01 0.38 -0.03 16 2 C -0.02 -0.15 7.10 -82.95 -0.59 -0.74 16 3 C -0.05 -0.32 12.10 29.67 0.36 0.04 16 4 O -0.19 -1.63 10.52 5.01 0.05 -1.58 16 5 C 0.14 1.71 8.07 -14.03 -0.11 1.59 16 6 C 0.62 8.19 7.82 -12.51 -0.10 8.09 16 7 O -0.47 -8.07 17.00 5.28 0.09 -7.98 16 8 N -0.66 -6.92 5.71 -63.76 -0.36 -7.29 16 9 C 0.09 1.07 3.92 -147.16 -0.58 0.49 16 10 C -0.08 -0.94 7.78 -26.71 -0.21 -1.14 16 11 C -0.14 -2.17 3.11 -172.27 -0.54 -2.70 16 12 C 0.59 11.60 8.17 -10.99 -0.09 11.51 16 13 O -0.56 -12.46 17.82 5.56 0.10 -12.36 16 14 N -0.63 -12.90 3.61 -178.41 -0.64 -13.54 16 15 C 0.10 2.17 8.39 -2.97 -0.02 2.15 16 16 C 0.03 0.80 3.62 -90.83 -0.33 0.47 16 17 C -0.52 -13.29 8.77 -34.44 -0.30 -13.59 16 18 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 19 C 0.07 1.79 5.46 -17.82 -0.10 1.69 16 20 N -0.88 -24.36 13.27 55.43 0.74 -23.63 16 21 Si 0.89 20.36 29.54 -169.99 -5.02 15.34 16 22 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 23 H -0.29 -6.53 7.11 56.52 0.40 -6.12 16 24 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 25 C 0.10 2.22 8.17 -2.96 -0.02 2.20 16 26 C -0.10 -1.44 7.93 -24.71 -0.20 -1.64 16 27 C -0.10 -1.35 7.76 -25.99 -0.20 -1.55 16 28 N -0.41 -5.29 11.25 -8.03 -0.09 -5.38 16 29 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.08 0.21 8.14 -51.93 -0.42 -0.21 16 32 H 0.23 0.32 8.06 -52.49 -0.42 -0.11 16 33 H 0.41 2.96 8.59 -40.82 -0.35 2.61 16 34 H 0.08 0.91 7.94 -51.93 -0.41 0.50 16 35 H 0.09 0.93 7.91 -51.93 -0.41 0.52 16 36 H 0.08 1.51 8.09 -51.93 -0.42 1.09 16 37 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 38 H 0.07 1.67 8.13 -51.93 -0.42 1.25 16 39 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 40 H 0.07 1.41 7.63 -51.93 -0.40 1.02 16 41 H 0.08 1.62 8.09 -51.93 -0.42 1.20 16 42 H 0.08 1.07 7.91 -51.93 -0.41 0.66 16 43 H 0.09 1.55 7.45 -51.93 -0.39 1.16 16 44 H 0.09 1.48 7.97 -51.92 -0.41 1.06 16 45 H 0.08 0.99 7.93 -51.93 -0.41 0.58 16 LS Contribution 393.02 15.07 5.92 5.92 Total: -1.00 -33.44 393.02 -7.98 -41.42 By element: Atomic # 1 Polarization: 8.35 SS G_CDS: -6.11 Total: 2.24 kcal Atomic # 6 Polarization: 9.49 SS G_CDS: -2.65 Total: 6.84 kcal Atomic # 7 Polarization: -49.48 SS G_CDS: -0.36 Total: -49.84 kcal Atomic # 8 Polarization: -22.17 SS G_CDS: 0.24 Total: -21.93 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.34 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -33.44 -7.98 -41.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275124702.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.141 kcal (2) G-P(sol) polarization free energy of solvation -33.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.419 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds