Wall clock time and date at job start Wed Apr 1 2020 03:47:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.35245 * 126.07737 * 2 1 4 4 O 1.34310 * 107.20967 * 179.97438 * 3 2 1 5 5 C 1.34551 * 107.65739 * 359.97438 * 4 3 2 6 6 C 1.47449 * 125.70745 * 179.97438 * 5 4 3 7 7 O 1.21602 * 120.00144 * 180.02562 * 6 5 4 8 8 N 1.34780 * 120.00245 * 0.02562 * 6 5 4 9 9 C 1.46500 * 120.00390 * 180.02562 * 8 6 5 10 10 C 1.54412 * 129.01250 * 180.02562 * 9 8 6 11 11 C 1.54419 * 78.89086 * 180.64334 * 10 9 8 12 12 C 1.50703 * 129.01419 * 180.64405 * 11 10 9 13 13 O 1.21281 * 119.99538 * 359.97438 * 12 11 10 14 14 N 1.34769 * 119.99988 * 180.02562 * 12 11 10 15 15 C 1.47584 * 134.49063 * 180.02562 * 14 12 11 16 16 C 1.53947 * 86.11565 * 204.63541 * 15 14 12 17 17 C 1.50699 * 113.73968 * 222.04272 * 16 15 14 18 18 H 1.07998 * 120.00165 * 0.02562 * 17 16 15 19 19 C 1.37878 * 119.99722 * 179.97438 * 17 16 15 20 20 N 1.31513 * 119.99969 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99800 * 180.02562 * 19 17 16 22 22 H 1.48507 * 109.46673 * 90.00806 * 21 19 17 23 23 H 1.48502 * 109.47065 * 210.00473 * 21 19 17 24 24 H 1.48489 * 109.47475 * 330.00611 * 21 19 17 25 25 C 1.47577 * 134.49641 * 359.97438 * 14 12 11 26 26 C 1.54891 * 84.49409 * 43.15382 * 11 10 9 27 27 C 1.54885 * 84.49103 * 318.13307 * 11 10 9 28 28 N 1.31291 * 108.58619 * 0.26307 * 5 4 3 29 29 H 1.08997 * 109.47039 * 90.00114 * 1 2 3 30 30 H 1.09001 * 109.46843 * 210.00361 * 1 2 3 31 31 H 1.09003 * 109.46832 * 329.99889 * 1 2 3 32 32 H 1.08001 * 126.39369 * 359.97438 * 3 2 1 33 33 H 0.97004 * 119.99616 * 0.02562 * 8 6 5 34 34 H 1.08992 * 114.93459 * 68.15798 * 10 9 8 35 35 H 1.08998 * 114.98218 * 293.12337 * 10 9 8 36 36 H 1.09001 * 113.76908 * 90.33461 * 15 14 12 37 37 H 1.08997 * 113.76763 * 318.93723 * 15 14 12 38 38 H 1.08997 * 113.73914 * 90.73986 * 16 15 14 39 39 H 0.97000 * 119.99858 * 179.97438 * 20 19 17 40 40 H 1.08995 * 113.76947 * 41.05826 * 25 14 12 41 41 H 1.09001 * 113.87193 * 269.67722 * 25 14 12 42 42 H 1.09001 * 114.98080 * 69.39259 * 26 11 10 43 43 H 1.09003 * 114.97457 * 204.56822 * 26 11 10 44 44 H 1.09008 * 114.97367 * 155.43371 * 27 11 10 45 45 H 1.08998 * 114.98354 * 290.60293 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3035 1.0931 0.0000 4 8 3.5744 0.6587 0.0006 5 6 3.5460 -0.6865 0.0015 6 6 4.7249 -1.5721 0.0018 7 8 4.5784 -2.7793 0.0022 8 7 5.9648 -1.0438 0.0017 9 6 7.1361 -1.9237 0.0015 10 6 8.6338 -1.5483 0.0018 11 6 8.7136 -3.0904 -0.0159 12 6 9.9320 -3.9773 -0.0159 13 8 11.0403 -3.4851 -0.0010 14 7 9.7899 -5.3174 -0.0337 15 6 10.7277 -6.4569 -0.0388 16 6 9.5895 -7.2556 -0.6996 17 6 9.4369 -8.6542 -0.1596 18 1 10.0957 -9.0069 0.6202 19 6 8.4554 -9.4832 -0.6602 20 7 7.6529 -9.0535 -1.6093 21 14 8.2658 -11.2166 0.0096 22 1 7.3220 -11.2036 1.1562 23 1 7.7368 -12.1043 -1.0569 24 1 9.5875 -11.7199 0.4621 25 6 8.6341 -6.2348 -0.0547 26 6 7.5800 -2.9881 -1.0663 27 6 7.5621 -3.0129 1.0170 28 7 2.2930 -1.0786 -0.0042 29 1 -0.3633 0.0000 -1.0276 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3633 0.8900 0.5139 32 1 1.9782 2.1229 -0.0004 33 1 6.0816 -0.0808 0.0018 34 1 8.9900 -1.0803 0.9195 35 1 8.9862 -1.0596 -0.9065 36 1 10.9931 -6.8121 0.9569 37 1 11.5937 -6.3102 -0.6843 38 1 9.6022 -7.2184 -1.7888 39 1 6.9627 -9.6368 -1.9618 40 1 7.8279 -5.9107 -0.7128 41 1 8.2836 -6.5257 0.9356 42 1 7.8795 -2.5707 -2.0277 43 1 6.9465 -3.8715 -1.1473 44 1 6.9275 -3.8978 1.0660 45 1 7.8448 -2.6186 1.9930 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001275124702.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:47:46 Heat of formation + Delta-G solvation = 70.222948 kcal Electronic energy + Delta-G solvation = -29339.434322 eV Core-core repulsion = 25135.111021 eV Total energy + Delta-G solvation = -4204.323300 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -44.60728 -43.30143 -40.79221 -40.26124 -38.49002 -36.58316 -35.17541 -34.63459 -32.73015 -31.10997 -28.86297 -27.68262 -27.03187 -26.95892 -26.70118 -26.33774 -24.84733 -22.66569 -22.49161 -21.61621 -20.45217 -19.48670 -19.27249 -18.70013 -18.12032 -18.05698 -17.58387 -17.35268 -16.64373 -16.29338 -16.18650 -16.02649 -15.55289 -15.51186 -15.29642 -15.05537 -14.89948 -14.22397 -14.14410 -14.06206 -13.70746 -13.34690 -13.22591 -13.11176 -13.00554 -12.83227 -12.73432 -12.48106 -12.29957 -12.26648 -12.25343 -11.96143 -11.79902 -11.66368 -11.46847 -11.34039 -11.14813 -10.77779 -10.54598 -10.45146 -9.93659 -9.59721 -8.16833 -6.28269 -0.32632 0.96259 1.08214 1.38730 1.46235 1.47876 1.57454 1.61659 1.85075 1.93967 2.45231 2.87650 3.04019 3.13873 3.16052 3.18601 3.29730 3.40662 3.50096 3.65108 3.78910 4.27246 4.38351 4.39893 4.41274 4.45153 4.54367 4.58362 4.61413 4.65052 4.70655 4.72674 4.76139 4.77645 4.79181 4.83347 4.86381 4.88259 4.99865 5.06141 5.21595 5.30843 5.58527 5.80544 5.97027 6.21336 6.48328 6.72907 6.79302 6.81408 7.11035 7.41909 8.92836 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.011630 B = 0.002491 C = 0.002095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2407.086587 B =11235.752122 C =13359.095013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.048 4.048 3 C -0.010 4.010 4 O -0.179 6.179 5 C 0.114 3.886 6 C 0.621 3.379 7 O -0.521 6.521 8 N -0.639 5.639 9 C 0.109 3.891 10 C -0.053 4.053 11 C -0.165 4.165 12 C 0.587 3.413 13 O -0.584 6.584 14 N -0.633 5.633 15 C 0.111 3.889 16 C 0.023 3.977 17 C -0.529 4.529 18 H 0.068 0.932 19 C 0.018 3.982 20 N -0.919 5.919 21 Si 0.958 3.042 22 H -0.276 1.276 23 H -0.287 1.287 24 H -0.263 1.263 25 C 0.122 3.878 26 C -0.106 4.106 27 C -0.097 4.097 28 N -0.447 5.447 29 H 0.086 0.914 30 H 0.064 0.936 31 H 0.113 0.887 32 H 0.282 0.718 33 H 0.432 0.568 34 H 0.107 0.893 35 H 0.104 0.896 36 H 0.088 0.912 37 H 0.069 0.931 38 H 0.037 0.963 39 H 0.264 0.736 40 H 0.055 0.945 41 H 0.076 0.924 42 H 0.094 0.906 43 H 0.063 0.937 44 H 0.067 0.933 45 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.733 26.372 4.017 29.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.173 4.173 3 C -0.083 4.083 4 O -0.062 6.062 5 C -0.091 4.091 6 C 0.404 3.596 7 O -0.394 6.394 8 N -0.291 5.291 9 C 0.020 3.980 10 C -0.091 4.091 11 C -0.169 4.169 12 C 0.377 3.623 13 O -0.466 6.466 14 N -0.365 5.365 15 C -0.010 4.010 16 C 0.003 3.997 17 C -0.567 4.567 18 H 0.087 0.913 19 C -0.182 4.182 20 N -0.557 5.557 21 Si 0.783 3.217 22 H -0.202 1.202 23 H -0.213 1.213 24 H -0.188 1.188 25 C -0.001 4.001 26 C -0.145 4.145 27 C -0.136 4.136 28 N -0.182 5.182 29 H 0.104 0.896 30 H 0.083 0.917 31 H 0.131 0.869 32 H 0.297 0.703 33 H 0.273 0.727 34 H 0.125 0.875 35 H 0.122 0.878 36 H 0.106 0.894 37 H 0.087 0.913 38 H 0.055 0.945 39 H 0.072 0.928 40 H 0.074 0.926 41 H 0.094 0.906 42 H 0.112 0.888 43 H 0.082 0.918 44 H 0.086 0.914 45 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -11.476 25.312 3.906 28.065 hybrid contribution -0.181 -0.377 0.014 0.418 sum -11.657 24.935 3.920 27.803 Atomic orbital electron populations 1.20297 0.83645 1.04775 1.04135 1.22748 1.00260 0.87374 1.06869 1.26412 0.78315 1.02888 1.00637 1.84472 1.32107 1.21765 1.67882 1.24914 0.94082 0.79695 1.10382 1.16120 0.80842 0.85466 0.77158 1.90966 1.85000 1.14379 1.49098 1.44068 1.01305 1.10476 1.73244 1.22965 0.86105 0.91956 0.96943 1.23895 0.88730 0.91211 1.05227 1.23108 0.93470 0.98685 1.01605 1.18496 0.87981 0.80493 0.75294 1.90619 1.27556 1.74598 1.53825 1.50319 1.12856 1.03258 1.70077 1.23441 0.94735 0.81864 1.00992 1.20428 0.90702 0.93011 0.95524 1.21273 1.16596 0.97700 1.21095 0.91343 1.25792 0.95375 1.02246 0.94759 1.70066 1.19670 1.38054 1.27924 0.85554 0.78671 0.79552 0.77891 1.20152 1.21299 1.18762 1.23444 0.90150 0.86379 1.00128 1.24913 0.93808 0.98523 0.97305 1.24395 0.93393 0.98269 0.97577 1.70267 1.00731 1.33973 1.13194 0.89586 0.91716 0.86893 0.70318 0.72699 0.87487 0.87767 0.89401 0.91301 0.94518 0.92755 0.92629 0.90563 0.88797 0.91800 0.91424 0.88380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.63 10.43 71.24 0.74 0.11 16 2 C -0.05 -0.77 7.10 41.62 0.30 -0.47 16 3 C -0.01 -0.09 12.10 67.13 0.81 0.72 16 4 O -0.18 -2.63 10.52 -4.98 -0.05 -2.69 16 5 C 0.11 2.66 8.07 87.20 0.70 3.36 16 6 C 0.62 16.62 7.82 86.67 0.68 17.30 16 7 O -0.52 -19.12 17.00 -4.04 -0.07 -19.19 16 8 N -0.64 -12.54 5.71 -473.89 -2.71 -15.25 16 9 C 0.11 2.56 3.92 -6.34 -0.02 2.54 16 10 C -0.05 -1.12 7.78 30.61 0.24 -0.88 16 11 C -0.16 -5.08 3.11 -63.68 -0.20 -5.28 16 12 C 0.59 23.19 8.17 87.66 0.72 23.91 16 13 O -0.58 -25.70 17.82 -3.03 -0.05 -25.75 16 14 N -0.63 -26.47 3.61 -836.76 -3.02 -29.49 16 15 C 0.11 4.69 8.39 86.48 0.73 5.41 16 16 C 0.02 1.10 3.62 -10.87 -0.04 1.06 16 17 C -0.53 -27.46 8.77 25.60 0.22 -27.23 16 18 H 0.07 3.41 7.81 -2.91 -0.02 3.39 16 19 C 0.02 0.98 5.46 84.66 0.46 1.45 16 20 N -0.92 -52.29 13.27 21.45 0.28 -52.00 16 21 Si 0.96 42.21 29.54 68.60 2.03 44.24 16 22 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 23 H -0.29 -12.63 7.11 99.48 0.71 -11.92 16 24 H -0.26 -11.12 7.11 99.48 0.71 -10.41 16 25 C 0.12 5.42 8.17 86.49 0.71 6.13 16 26 C -0.11 -3.14 7.93 31.90 0.25 -2.89 16 27 C -0.10 -2.73 7.76 31.07 0.24 -2.49 16 28 N -0.45 -11.67 11.25 -293.27 -3.30 -14.97 16 29 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.06 0.78 8.14 -2.39 -0.02 0.77 16 31 H 0.11 0.18 8.14 -2.39 -0.02 0.16 16 32 H 0.28 -1.02 8.06 -2.91 -0.02 -1.04 16 33 H 0.43 5.03 8.59 -92.71 -0.80 4.23 16 34 H 0.11 1.88 7.94 -2.39 -0.02 1.86 16 35 H 0.10 1.90 7.91 -2.39 -0.02 1.88 16 36 H 0.09 3.48 8.09 -2.39 -0.02 3.46 16 37 H 0.07 2.79 8.14 -2.39 -0.02 2.77 16 38 H 0.04 1.98 8.13 -2.39 -0.02 1.96 16 39 H 0.26 14.36 8.31 -92.71 -0.77 13.59 16 40 H 0.06 2.57 7.63 -2.39 -0.02 2.55 16 41 H 0.08 3.38 8.09 -2.39 -0.02 3.36 16 42 H 0.09 2.47 7.91 -2.39 -0.02 2.45 16 43 H 0.06 2.27 7.45 -2.39 -0.02 2.25 16 44 H 0.07 2.26 7.97 -2.38 -0.02 2.24 16 45 H 0.10 2.33 7.93 -2.39 -0.02 2.32 16 Total: -1.00 -77.02 393.02 -0.11 -77.13 By element: Atomic # 1 Polarization: 14.98 SS G_CDS: 0.24 Total: 15.22 kcal Atomic # 6 Polarization: 16.21 SS G_CDS: 6.54 Total: 22.75 kcal Atomic # 7 Polarization: -102.97 SS G_CDS: -8.74 Total: -111.71 kcal Atomic # 8 Polarization: -47.45 SS G_CDS: -0.18 Total: -47.63 kcal Atomic # 14 Polarization: 42.21 SS G_CDS: 2.03 Total: 44.24 kcal Total: -77.02 -0.11 -77.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275124702.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.352 kcal (2) G-P(sol) polarization free energy of solvation -77.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.129 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds