Wall clock time and date at job start Wed Apr 1 2020 03:47:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.35239 * 126.07845 * 2 1 4 4 O 1.34311 * 107.21412 * 180.02562 * 3 2 1 5 5 C 1.34553 * 107.65303 * 359.97438 * 4 3 2 6 6 C 1.47451 * 125.70712 * 180.02562 * 5 4 3 7 7 O 1.21599 * 120.00109 * 180.02562 * 6 5 4 8 8 N 1.34781 * 120.00148 * 0.02562 * 6 5 4 9 9 C 1.47717 * 134.39751 * 180.02562 * 8 6 5 10 10 C 1.53284 * 85.85788 * 155.90251 * 9 8 6 11 11 C 1.52471 * 128.85242 * 243.34695 * 10 9 8 12 12 C 1.52333 * 128.81896 * 163.00825 * 10 9 8 13 13 H 1.08996 * 117.51867 * 225.38165 * 12 10 9 14 14 C 1.50700 * 117.51315 * 10.46160 * 12 10 9 15 15 O 1.21282 * 120.00222 * 359.82986 * 14 12 10 16 16 N 1.34780 * 120.00120 * 179.82714 * 14 12 10 17 17 C 1.47067 * 136.05152 * 359.63028 * 16 14 12 18 18 C 1.53497 * 87.98534 * 153.13820 * 17 16 14 19 19 C 1.50698 * 114.38966 * 139.66545 * 18 17 16 20 20 H 1.07996 * 120.00304 * 266.31457 * 19 18 17 21 21 C 1.37877 * 119.99717 * 86.31599 * 19 18 17 22 22 N 1.31516 * 120.00413 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99925 * 180.02562 * 21 19 18 24 24 H 1.48494 * 109.47501 * 89.99586 * 23 21 19 25 25 H 1.48497 * 109.47256 * 210.00032 * 23 21 19 26 26 H 1.48506 * 109.46855 * 329.99520 * 23 21 19 27 27 C 1.47066 * 136.06263 * 180.02562 * 16 14 12 28 28 C 1.47722 * 134.39010 * 359.97438 * 8 6 5 29 29 N 1.31288 * 108.58401 * 0.26544 * 5 4 3 30 30 H 1.08992 * 109.47356 * 89.99404 * 1 2 3 31 31 H 1.08997 * 109.46727 * 210.00162 * 1 2 3 32 32 H 1.08998 * 109.46896 * 329.99242 * 1 2 3 33 33 H 1.08001 * 126.39470 * 0.06051 * 3 2 1 34 34 H 1.08996 * 113.81318 * 41.66569 * 9 8 6 35 35 H 1.09009 * 113.91722 * 270.15396 * 9 8 6 36 36 H 1.09004 * 117.50407 * 134.69794 * 11 10 9 37 37 H 1.08998 * 117.54303 * 349.55104 * 11 10 9 38 38 H 1.09007 * 113.46858 * 267.91303 * 17 16 14 39 39 H 1.08993 * 113.47208 * 38.35639 * 17 16 14 40 40 H 1.09006 * 114.20377 * 272.47966 * 18 17 16 41 41 H 0.96998 * 119.99931 * 179.97438 * 22 21 19 42 42 H 1.09005 * 113.46156 * 321.64401 * 27 16 14 43 43 H 1.08994 * 113.46837 * 92.02042 * 27 16 14 44 44 H 1.09004 * 113.81085 * 89.86370 * 28 8 6 45 45 H 1.08998 * 113.81604 * 318.32971 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3035 1.0930 0.0000 4 8 3.5744 0.6588 -0.0006 5 6 3.5460 -0.6865 -0.0003 6 6 4.7249 -1.5722 -0.0003 7 8 4.5784 -2.7793 -0.0005 8 7 5.9648 -1.0438 0.0001 9 6 7.3293 -1.6096 -0.0002 10 6 7.7616 -0.2777 -0.6236 11 6 8.3696 -0.0173 -1.9974 12 6 9.1596 0.3182 -0.7289 13 1 9.2788 1.3711 -0.4736 14 6 10.3240 -0.5718 -0.3781 15 8 10.1283 -1.7154 -0.0247 16 7 11.5829 -0.0970 -0.4571 17 6 12.2121 1.1776 -0.8343 18 6 13.3840 0.8092 0.0861 19 6 14.7423 1.1563 -0.4666 20 1 15.3062 0.4178 -1.0169 21 6 15.2652 2.4168 -0.2696 22 7 14.5783 3.3164 0.4002 23 14 16.9486 2.8473 -0.9553 24 1 16.7990 3.3945 -2.3277 25 1 17.5927 3.8634 -0.0848 26 1 17.7925 1.6261 -0.9986 27 6 12.9322 -0.6276 -0.2108 28 6 6.5016 0.3324 0.0000 29 7 2.2930 -1.0785 -0.0054 30 1 -0.3633 0.0001 -1.0276 31 1 -0.3633 -0.8900 0.5139 32 1 -0.3633 0.8899 0.5139 33 1 1.9782 2.1229 0.0009 34 1 7.4505 -2.4659 -0.6636 35 1 7.7365 -1.7820 0.9962 36 1 7.9686 0.8151 -2.5758 37 1 8.6923 -0.8816 -2.5778 38 1 12.4877 1.2308 -1.8876 39 1 11.6553 2.0525 -0.4991 40 1 13.2502 1.1146 1.1240 41 1 14.9464 4.2030 0.5390 42 1 12.9876 -1.2878 0.6548 43 1 13.3989 -1.0558 -1.0978 44 1 6.6590 0.7435 0.9972 45 1 5.9679 1.0130 -0.6633 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001275126092.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:47:12 Heat of formation + Delta-G solvation = 45.408499 kcal Electronic energy + Delta-G solvation = -28861.369481 eV Core-core repulsion = 24655.970145 eV Total energy + Delta-G solvation = -4205.399336 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -44.58879 -41.91689 -40.89068 -39.65205 -38.46113 -36.50636 -35.63619 -34.61582 -32.82148 -31.11994 -30.02457 -28.18299 -27.46283 -27.29548 -26.66721 -24.98760 -24.56917 -22.63414 -22.05098 -21.25333 -20.16783 -19.42025 -18.84952 -18.67306 -18.15852 -18.08423 -17.75045 -17.19605 -16.98309 -16.60088 -16.38797 -16.11009 -15.63066 -15.37259 -15.07280 -14.79515 -14.46666 -14.33200 -14.21788 -14.13195 -14.01304 -13.65041 -13.22988 -13.18513 -13.11608 -13.05936 -12.73638 -12.56992 -12.26858 -12.20061 -12.13015 -11.95274 -11.81070 -11.63821 -11.35628 -11.14023 -11.01545 -10.68628 -10.48029 -10.17366 -9.85800 -9.52149 -8.14518 -6.24819 -0.30925 0.96385 1.09608 1.48845 1.49181 1.52290 1.60538 1.63961 1.86472 1.97648 2.47865 2.64707 2.84238 3.01560 3.16453 3.35819 3.62616 3.64077 3.75354 3.83798 4.06491 4.19831 4.29846 4.33138 4.41735 4.43268 4.47925 4.55071 4.57298 4.62647 4.69385 4.74009 4.76758 4.77463 4.79359 4.79409 4.87204 4.88211 4.95117 5.02800 5.15291 5.30802 5.63150 5.84607 6.18846 6.26414 6.33669 6.67847 6.83464 6.95302 7.19918 7.45163 8.95243 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.026849 B = 0.001817 C = 0.001735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.631779 B =15403.724173 C =16138.758478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.046 4.046 3 C -0.016 4.016 4 O -0.178 6.178 5 C 0.118 3.882 6 C 0.636 3.364 7 O -0.545 6.545 8 N -0.629 5.629 9 C 0.163 3.837 10 C -0.149 4.149 11 C -0.093 4.093 12 C -0.155 4.155 13 H 0.150 0.850 14 C 0.553 3.447 15 O -0.591 6.591 16 N -0.641 5.641 17 C 0.118 3.882 18 C 0.020 3.980 19 C -0.528 4.528 20 H 0.064 0.936 21 C 0.024 3.976 22 N -0.916 5.916 23 Si 0.955 3.045 24 H -0.273 1.273 25 H -0.288 1.288 26 H -0.270 1.270 27 C 0.104 3.896 28 C 0.156 3.844 29 N -0.448 5.448 30 H 0.087 0.913 31 H 0.065 0.935 32 H 0.111 0.889 33 H 0.279 0.721 34 H 0.074 0.926 35 H 0.093 0.907 36 H 0.148 0.852 37 H 0.096 0.904 38 H 0.081 0.919 39 H 0.067 0.933 40 H 0.039 0.961 41 H 0.265 0.735 42 H 0.053 0.947 43 H 0.082 0.918 44 H 0.117 0.883 45 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.225 4.520 -3.718 24.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.170 4.170 3 C -0.088 4.088 4 O -0.061 6.061 5 C -0.087 4.087 6 C 0.422 3.578 7 O -0.423 6.423 8 N -0.364 5.364 9 C 0.042 3.958 10 C -0.151 4.151 11 C -0.130 4.130 12 C -0.176 4.176 13 H 0.167 0.833 14 C 0.344 3.656 15 O -0.473 6.473 16 N -0.373 5.373 17 C -0.004 4.004 18 C 0.001 3.999 19 C -0.566 4.566 20 H 0.082 0.918 21 C -0.177 4.177 22 N -0.554 5.554 23 Si 0.781 3.219 24 H -0.198 1.198 25 H -0.214 1.214 26 H -0.194 1.194 27 C -0.019 4.019 28 C 0.035 3.965 29 N -0.183 5.183 30 H 0.105 0.895 31 H 0.084 0.916 32 H 0.130 0.870 33 H 0.295 0.705 34 H 0.093 0.907 35 H 0.111 0.889 36 H 0.166 0.834 37 H 0.115 0.885 38 H 0.099 0.901 39 H 0.085 0.915 40 H 0.058 0.942 41 H 0.074 0.926 42 H 0.072 0.928 43 H 0.100 0.900 44 H 0.135 0.865 45 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -24.862 2.674 -3.454 25.243 hybrid contribution 1.358 0.520 0.053 1.455 sum -23.504 3.194 -3.402 23.963 Atomic orbital electron populations 1.20292 0.83454 1.04774 1.04191 1.22747 1.00260 0.87302 1.06728 1.26418 0.78490 1.02948 1.00949 1.84511 1.31991 1.21882 1.67677 1.24930 0.93950 0.79707 1.10087 1.15653 0.79744 0.84969 0.77393 1.90873 1.84728 1.14434 1.52243 1.49805 1.03604 1.12434 1.70538 1.22585 0.75585 0.96339 1.01316 1.22460 0.92750 0.96984 1.02909 1.23056 0.97313 1.04352 0.88290 1.22066 0.88381 1.00683 1.06459 0.83259 1.19817 0.82393 0.86628 0.76757 1.90633 1.85079 1.20635 1.50993 1.49938 1.04308 1.18128 1.64950 1.23309 0.92284 0.84574 1.00275 1.20244 0.93680 0.90367 0.95616 1.21199 1.02312 0.97882 1.35239 0.91773 1.25698 1.00668 0.96438 0.94846 1.70038 1.39387 1.05128 1.40857 0.85597 0.80044 0.77928 0.78326 1.19805 1.21369 1.19420 1.23228 0.79658 0.99080 0.99915 1.23038 0.87504 0.83220 1.02704 1.70253 1.00516 1.33898 1.13613 0.89456 0.91569 0.87035 0.70521 0.90743 0.88897 0.83412 0.88531 0.90083 0.91470 0.94234 0.92648 0.92841 0.90020 0.86516 0.86344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.58 10.43 71.24 0.74 0.16 16 2 C -0.05 -0.74 7.10 41.62 0.30 -0.44 16 3 C -0.02 -0.16 12.10 67.13 0.81 0.65 16 4 O -0.18 -2.96 9.27 -5.00 -0.05 -3.00 16 5 C 0.12 2.96 8.01 87.20 0.70 3.66 16 6 C 0.64 18.84 8.05 86.67 0.70 19.54 16 7 O -0.55 -20.80 17.80 -4.03 -0.07 -20.87 16 8 N -0.63 -15.32 3.61 -851.33 -3.07 -18.39 16 9 C 0.16 4.32 7.27 86.24 0.63 4.95 16 10 C -0.15 -3.11 3.04 -52.35 -0.16 -3.27 16 11 C -0.09 -1.72 10.24 30.47 0.31 -1.40 16 12 C -0.15 -3.65 6.01 -11.71 -0.07 -3.72 16 13 H 0.15 2.98 8.14 -2.39 -0.02 2.96 16 14 C 0.55 19.10 7.86 87.66 0.69 19.79 16 15 O -0.59 -23.92 15.91 -3.04 -0.05 -23.97 16 16 N -0.64 -23.85 3.69 -858.27 -3.17 -27.01 16 17 C 0.12 4.48 7.99 83.18 0.66 5.15 16 18 C 0.02 0.91 3.78 -11.20 -0.04 0.87 16 19 C -0.53 -25.81 8.83 25.60 0.23 -25.58 16 20 H 0.06 3.06 7.81 -2.91 -0.02 3.04 16 21 C 0.02 1.19 5.46 84.65 0.46 1.66 16 22 N -0.92 -48.04 13.26 21.45 0.28 -47.76 16 23 Si 0.96 39.48 29.54 68.60 2.03 41.50 16 24 H -0.27 -10.91 7.11 99.48 0.71 -10.21 16 25 H -0.29 -11.92 7.11 99.48 0.71 -11.21 16 26 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 27 C 0.10 4.14 8.18 83.19 0.68 4.82 16 28 C 0.16 2.51 7.93 86.23 0.68 3.19 16 29 N -0.45 -11.81 11.25 -293.28 -3.30 -15.11 16 30 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.11 0.16 8.14 -2.39 -0.02 0.14 16 33 H 0.28 -0.65 8.06 -2.91 -0.02 -0.67 16 34 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 35 H 0.09 2.65 8.00 -2.38 -0.02 2.63 16 36 H 0.15 1.68 8.14 -2.38 -0.02 1.66 16 37 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 38 H 0.08 2.99 8.10 -2.38 -0.02 2.97 16 39 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 40 H 0.04 1.99 8.11 -2.38 -0.02 1.97 16 41 H 0.26 13.23 8.31 -92.71 -0.77 12.46 16 42 H 0.05 2.14 8.14 -2.38 -0.02 2.12 16 43 H 0.08 3.11 8.10 -2.39 -0.02 3.09 16 44 H 0.12 1.54 8.14 -2.38 -0.02 1.52 16 45 H 0.12 1.31 7.55 -2.39 -0.02 1.30 16 Total: -1.00 -74.13 393.39 0.94 -73.19 By element: Atomic # 1 Polarization: 10.41 SS G_CDS: 1.01 Total: 11.43 kcal Atomic # 6 Polarization: 22.68 SS G_CDS: 7.32 Total: 30.00 kcal Atomic # 7 Polarization: -99.02 SS G_CDS: -9.26 Total: -108.28 kcal Atomic # 8 Polarization: -47.68 SS G_CDS: -0.17 Total: -47.84 kcal Atomic # 14 Polarization: 39.48 SS G_CDS: 2.03 Total: 41.50 kcal Total: -74.13 0.94 -73.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275126092.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.595 kcal (2) G-P(sol) polarization free energy of solvation -74.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.186 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds