Wall clock time and date at job start Wed Apr 1 2020 03:47:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35239 * 126.08189 * 2 1 4 4 O 1.34314 * 107.21626 * 179.76309 * 3 2 1 5 5 C 1.34552 * 107.64974 * 0.38966 * 4 3 2 6 6 C 1.47454 * 125.70157 * 179.87640 * 5 4 3 7 7 O 1.21598 * 119.99620 * 179.69317 * 6 5 4 8 8 N 1.34775 * 120.00204 * 359.68326 * 6 5 4 9 9 C 1.49864 * 127.93671 * 3.87163 * 8 6 5 10 10 C 1.54941 * 103.40262 * 219.93237 * 9 8 6 11 11 C 1.54577 * 102.86013 * 322.44302 * 10 9 8 12 12 H 1.09001 * 118.12299 * 242.39387 * 11 10 9 13 13 C 1.52933 * 118.20004 * 85.42749 * 11 10 9 14 14 C 1.47528 * 127.04416 * 184.68461 * 8 6 5 15 15 C 1.50706 * 117.37047 * 295.06535 * 14 8 6 16 16 O 1.21283 * 120.00126 * 172.87922 * 15 14 8 17 17 N 1.34776 * 119.99825 * 352.88743 * 15 14 8 18 18 C 1.47582 * 134.49055 * 174.70725 * 17 15 14 19 19 C 1.53946 * 86.11696 * 155.35391 * 18 17 15 20 20 C 1.50702 * 113.74285 * 137.95188 * 19 18 17 21 21 H 1.07997 * 119.99777 * 1.92803 * 20 19 18 22 22 C 1.37873 * 119.99999 * 181.64846 * 20 19 18 23 23 N 1.31518 * 120.00089 * 0.27818 * 22 20 19 24 24 Si 1.86798 * 120.00001 * 180.27504 * 22 20 19 25 25 H 1.48495 * 109.46992 * 90.00105 * 24 22 20 26 26 H 1.48507 * 109.46923 * 210.00184 * 24 22 20 27 27 H 1.48501 * 109.47019 * 330.00191 * 24 22 20 28 28 C 1.47807 * 134.45748 * 354.56785 * 17 15 14 29 29 N 1.31284 * 108.58918 * 359.60750 * 5 4 3 30 30 H 1.09005 * 109.46997 * 269.97299 * 1 2 3 31 31 H 1.08998 * 109.47215 * 29.96715 * 1 2 3 32 32 H 1.08997 * 109.47261 * 149.96811 * 1 2 3 33 33 H 1.08004 * 126.39114 * 359.97347 * 3 2 1 34 34 H 1.08999 * 110.70363 * 101.38842 * 9 8 6 35 35 H 1.09004 * 110.62640 * 338.43725 * 9 8 6 36 36 H 1.09000 * 110.73197 * 204.09841 * 10 9 8 37 37 H 1.09000 * 110.88904 * 80.86082 * 10 9 8 38 38 H 1.08997 * 117.45428 * 160.77177 * 13 11 10 39 39 H 1.09007 * 117.42869 * 16.00588 * 13 11 10 40 40 H 1.09000 * 113.76845 * 41.05568 * 18 17 15 41 41 H 1.08997 * 113.87002 * 269.67013 * 18 17 15 42 42 H 1.09006 * 113.74427 * 269.15439 * 19 18 17 43 43 H 0.97005 * 120.00070 * 179.97438 * 23 22 20 44 44 H 1.09001 * 113.77388 * 90.38564 * 28 17 15 45 45 H 1.08999 * 113.83676 * 318.92073 * 28 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3034 1.0930 0.0000 4 8 3.5744 0.6587 0.0053 5 6 3.5459 -0.6865 -0.0002 6 6 4.7248 -1.5722 0.0002 7 8 4.5783 -2.7793 0.0004 8 7 5.9647 -1.0439 0.0001 9 6 6.3499 0.4022 0.0793 10 6 7.5332 0.5137 -0.9147 11 6 8.2858 -0.8200 -0.7047 12 1 9.3106 -0.7791 -0.3354 13 6 7.8161 -2.0462 -1.4887 14 6 7.2424 -1.7751 -0.0958 15 6 7.5983 -2.6998 1.0398 16 8 8.5700 -3.4205 0.9532 17 7 6.8368 -2.7260 2.1515 18 6 6.8252 -3.5466 3.3781 19 6 6.1284 -2.3482 4.0477 20 6 4.9911 -2.7379 4.9565 21 1 4.7555 -3.7806 5.1100 22 6 4.2550 -1.7634 5.5964 23 7 4.5419 -0.4936 5.4094 24 14 2.8503 -2.2466 6.7288 25 1 3.3648 -2.4156 8.1115 26 1 1.8135 -1.1834 6.7129 27 1 2.2556 -3.5248 6.2622 28 6 5.6795 -1.9422 2.6322 29 7 2.2930 -1.0786 -0.0002 30 1 -0.3633 -0.0005 1.0277 31 1 -0.3633 0.8903 -0.5133 32 1 -0.3633 -0.8897 -0.5143 33 1 1.9782 2.1229 -0.0004 34 1 6.6699 0.6610 1.0887 35 1 5.5222 1.0380 -0.2352 36 1 8.1710 1.3607 -0.6620 37 1 7.1729 0.5962 -1.9401 38 1 8.5159 -2.8755 -1.5914 39 1 7.1617 -1.8751 -2.3436 40 1 7.8181 -3.7559 3.7760 41 1 6.1989 -4.4359 3.3078 42 1 6.8179 -1.6413 4.5092 43 1 4.0238 0.1921 5.8593 44 1 4.7152 -2.3586 2.3408 45 1 5.7594 -0.8730 2.4358 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001275126454.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:47:32 Heat of formation + Delta-G solvation = 48.202538 kcal Electronic energy + Delta-G solvation = -31932.087885 eV Core-core repulsion = 27726.809708 eV Total energy + Delta-G solvation = -4205.278177 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -43.50149 -40.91508 -38.70405 -38.26530 -36.70929 -35.42349 -33.20322 -32.62346 -31.64413 -30.73648 -29.12651 -27.79634 -25.70869 -25.15842 -24.88601 -23.57771 -22.82015 -21.57093 -21.16045 -20.54264 -19.61418 -18.37522 -17.40087 -17.06351 -16.83834 -16.67486 -16.31689 -15.94130 -15.29735 -14.74810 -14.66283 -14.43022 -14.36799 -14.28866 -13.70908 -13.42369 -13.34726 -13.22354 -13.17909 -12.76286 -12.41029 -12.31358 -12.09583 -12.06663 -11.47361 -11.27324 -11.15484 -11.11258 -10.97085 -10.82235 -10.74405 -10.66174 -10.52746 -10.38495 -10.21058 -9.65843 -9.26604 -9.17203 -8.95261 -8.65414 -8.48076 -7.80198 -6.16640 -4.20467 0.86672 2.12590 2.20205 2.64018 2.78554 3.17412 3.25196 3.31587 3.36601 3.47152 3.73685 3.94769 4.31388 4.35648 4.47700 4.61165 4.65882 4.79366 4.91716 4.98972 5.03855 5.15198 5.23161 5.40805 5.43541 5.48659 5.54381 5.59746 5.68524 5.69855 5.71550 5.79743 6.02986 6.05442 6.11693 6.11939 6.23104 6.34870 6.41868 6.62413 6.66478 6.83036 7.19273 7.50371 7.56324 7.81203 7.96716 8.19299 8.49887 8.75504 8.81880 9.45627 10.93181 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.007697 B = 0.006026 C = 0.003872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3636.819274 B = 4645.085490 C = 7230.463944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.016 4.016 3 C -0.054 4.054 4 O -0.183 6.183 5 C 0.154 3.846 6 C 0.641 3.359 7 O -0.473 6.473 8 N -0.583 5.583 9 C 0.096 3.904 10 C -0.105 4.105 11 C -0.127 4.127 12 H 0.133 0.867 13 C -0.115 4.115 14 C 0.059 3.941 15 C 0.568 3.432 16 O -0.562 6.562 17 N -0.623 5.623 18 C 0.106 3.894 19 C 0.034 3.966 20 C -0.515 4.515 21 H 0.063 0.937 22 C 0.068 3.932 23 N -0.888 5.888 24 Si 0.893 3.107 25 H -0.278 1.278 26 H -0.286 1.286 27 H -0.271 1.271 28 C 0.110 3.890 29 N -0.407 5.407 30 H 0.079 0.921 31 H 0.076 0.924 32 H 0.078 0.922 33 H 0.222 0.778 34 H 0.089 0.911 35 H 0.097 0.903 36 H 0.095 0.905 37 H 0.081 0.919 38 H 0.121 0.879 39 H 0.103 0.897 40 H 0.063 0.937 41 H 0.076 0.924 42 H 0.063 0.937 43 H 0.262 0.738 44 H 0.074 0.926 45 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.189 9.883 -14.428 17.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.140 4.140 3 C -0.126 4.126 4 O -0.068 6.068 5 C -0.053 4.053 6 C 0.426 3.574 7 O -0.343 6.343 8 N -0.319 5.319 9 C -0.025 4.025 10 C -0.143 4.143 11 C -0.146 4.146 12 H 0.151 0.849 13 C -0.154 4.154 14 C -0.030 4.030 15 C 0.355 3.645 16 O -0.443 6.443 17 N -0.354 5.354 18 C -0.016 4.016 19 C 0.015 3.985 20 C -0.553 4.553 21 H 0.082 0.918 22 C -0.135 4.135 23 N -0.526 5.526 24 Si 0.721 3.279 25 H -0.204 1.204 26 H -0.212 1.212 27 H -0.196 1.196 28 C -0.012 4.012 29 N -0.140 5.140 30 H 0.098 0.902 31 H 0.095 0.905 32 H 0.097 0.903 33 H 0.239 0.761 34 H 0.108 0.892 35 H 0.115 0.885 36 H 0.113 0.887 37 H 0.100 0.900 38 H 0.139 0.861 39 H 0.121 0.879 40 H 0.081 0.919 41 H 0.094 0.906 42 H 0.081 0.919 43 H 0.071 0.929 44 H 0.092 0.908 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -0.946 8.349 -14.531 16.785 hybrid contribution -0.909 0.768 0.732 1.397 sum -1.855 9.117 -13.799 16.643 Atomic orbital electron populations 1.20144 0.85903 1.03433 1.03441 1.22018 0.98598 0.87698 1.05691 1.25265 0.80321 1.01279 1.05715 1.84532 1.30359 1.23493 1.68404 1.25387 0.94650 0.78595 1.06641 1.15399 0.78874 0.85462 0.77674 1.90957 1.83508 1.12074 1.47771 1.48315 1.02678 1.08335 1.72589 1.23348 0.97888 0.80273 1.00970 1.22412 0.95939 0.96058 0.99878 1.23781 0.98072 0.90097 1.02667 0.84925 1.23449 1.01351 0.98526 0.92058 1.21620 0.83935 1.01319 0.96173 1.18717 0.82872 0.82155 0.80754 1.90643 1.28846 1.44190 1.80585 1.50260 1.31615 1.36738 1.16767 1.23504 0.99905 0.97203 0.80966 1.20511 0.95435 0.91698 0.90899 1.20976 1.14303 0.93290 1.26732 0.91841 1.24990 0.97403 0.94904 0.96179 1.69952 1.40223 0.99393 1.42990 0.86560 0.81851 0.78484 0.81029 1.20431 1.21194 1.19600 1.23798 0.87640 0.94271 0.95513 1.70284 0.99498 1.31265 1.12951 0.90220 0.90536 0.90337 0.76119 0.89240 0.88501 0.88655 0.90050 0.86112 0.87883 0.91896 0.90626 0.91903 0.92855 0.90815 0.92497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.69 10.43 36.00 0.38 -0.31 16 2 C -0.02 -0.22 7.10 -82.95 -0.59 -0.81 16 3 C -0.05 -0.61 12.10 29.66 0.36 -0.25 16 4 O -0.18 -2.55 7.90 5.00 0.04 -2.51 16 5 C 0.15 2.68 7.93 -14.03 -0.11 2.57 16 6 C 0.64 12.17 5.33 -12.51 -0.07 12.10 16 7 O -0.47 -10.66 16.43 5.28 0.09 -10.57 16 8 N -0.58 -9.45 1.81 -156.07 -0.28 -9.74 16 9 C 0.10 1.17 6.55 -1.14 -0.01 1.16 16 10 C -0.10 -0.96 6.86 -24.88 -0.17 -1.13 16 11 C -0.13 -1.51 6.92 -89.30 -0.62 -2.13 16 12 H 0.13 1.49 8.14 -51.93 -0.42 1.06 16 13 C -0.12 -1.51 9.82 -26.73 -0.26 -1.78 16 14 C 0.06 0.98 2.47 -131.85 -0.33 0.65 16 15 C 0.57 12.02 7.89 -10.98 -0.09 11.93 16 16 O -0.56 -12.94 17.33 5.55 0.10 -12.84 16 17 N -0.62 -13.98 3.61 -178.21 -0.64 -14.63 16 18 C 0.11 2.40 8.40 -2.97 -0.02 2.38 16 19 C 0.03 0.84 3.60 -90.84 -0.33 0.51 16 20 C -0.51 -13.83 8.77 -34.44 -0.30 -14.13 16 21 H 0.06 1.69 7.81 -52.49 -0.41 1.28 16 22 C 0.07 1.84 5.46 -17.82 -0.10 1.74 16 23 N -0.89 -24.50 13.29 55.43 0.74 -23.76 16 24 Si 0.89 20.92 29.54 -169.99 -5.02 15.90 16 25 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 26 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 27 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 28 C 0.11 2.57 5.45 -2.84 -0.02 2.56 16 29 N -0.41 -7.34 11.25 -8.03 -0.09 -7.43 16 30 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.22 1.33 8.06 -52.48 -0.42 0.91 16 34 H 0.09 1.17 7.65 -51.93 -0.40 0.77 16 35 H 0.10 1.06 5.46 -51.93 -0.28 0.77 16 36 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.12 1.61 7.91 -51.93 -0.41 1.19 16 39 H 0.10 1.19 8.14 -51.92 -0.42 0.77 16 40 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 41 H 0.08 1.71 8.09 -51.93 -0.42 1.29 16 42 H 0.06 1.65 8.14 -51.93 -0.42 1.23 16 43 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 44 H 0.07 1.90 6.56 -51.93 -0.34 1.56 16 45 H 0.06 1.30 6.64 -51.93 -0.34 0.96 16 LS Contribution 377.31 15.07 5.69 5.69 Total: -1.00 -34.97 377.31 -7.63 -42.60 By element: Atomic # 1 Polarization: 8.21 SS G_CDS: -5.97 Total: 2.24 kcal Atomic # 6 Polarization: 17.33 SS G_CDS: -2.27 Total: 15.07 kcal Atomic # 7 Polarization: -55.28 SS G_CDS: -0.28 Total: -55.56 kcal Atomic # 8 Polarization: -26.15 SS G_CDS: 0.22 Total: -25.92 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -34.97 -7.63 -42.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275126454.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.801 kcal (2) G-P(sol) polarization free energy of solvation -34.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.598 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds