Wall clock time and date at job start Wed Apr 1 2020 03:47:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35239 * 126.08189 * 2 1 4 4 O 1.34314 * 107.21626 * 179.76309 * 3 2 1 5 5 C 1.34552 * 107.64974 * 0.38966 * 4 3 2 6 6 C 1.47454 * 125.70157 * 179.87640 * 5 4 3 7 7 O 1.21598 * 119.99620 * 179.69317 * 6 5 4 8 8 N 1.34775 * 120.00204 * 359.68326 * 6 5 4 9 9 C 1.49864 * 127.93671 * 3.87163 * 8 6 5 10 10 C 1.54941 * 103.40262 * 219.93237 * 9 8 6 11 11 C 1.54577 * 102.86013 * 322.44302 * 10 9 8 12 12 H 1.09001 * 118.12299 * 242.39387 * 11 10 9 13 13 C 1.52933 * 118.20004 * 85.42749 * 11 10 9 14 14 C 1.47528 * 127.04416 * 184.68461 * 8 6 5 15 15 C 1.50706 * 117.37047 * 295.06535 * 14 8 6 16 16 O 1.21283 * 120.00126 * 172.87922 * 15 14 8 17 17 N 1.34776 * 119.99825 * 352.88743 * 15 14 8 18 18 C 1.47582 * 134.49055 * 174.70725 * 17 15 14 19 19 C 1.53946 * 86.11696 * 155.35391 * 18 17 15 20 20 C 1.50702 * 113.74285 * 137.95188 * 19 18 17 21 21 H 1.07997 * 119.99777 * 1.92803 * 20 19 18 22 22 C 1.37873 * 119.99999 * 181.64846 * 20 19 18 23 23 N 1.31518 * 120.00089 * 0.27818 * 22 20 19 24 24 Si 1.86798 * 120.00001 * 180.27504 * 22 20 19 25 25 H 1.48495 * 109.46992 * 90.00105 * 24 22 20 26 26 H 1.48507 * 109.46923 * 210.00184 * 24 22 20 27 27 H 1.48501 * 109.47019 * 330.00191 * 24 22 20 28 28 C 1.47807 * 134.45748 * 354.56785 * 17 15 14 29 29 N 1.31284 * 108.58918 * 359.60750 * 5 4 3 30 30 H 1.09005 * 109.46997 * 269.97299 * 1 2 3 31 31 H 1.08998 * 109.47215 * 29.96715 * 1 2 3 32 32 H 1.08997 * 109.47261 * 149.96811 * 1 2 3 33 33 H 1.08004 * 126.39114 * 359.97347 * 3 2 1 34 34 H 1.08999 * 110.70363 * 101.38842 * 9 8 6 35 35 H 1.09004 * 110.62640 * 338.43725 * 9 8 6 36 36 H 1.09000 * 110.73197 * 204.09841 * 10 9 8 37 37 H 1.09000 * 110.88904 * 80.86082 * 10 9 8 38 38 H 1.08997 * 117.45428 * 160.77177 * 13 11 10 39 39 H 1.09007 * 117.42869 * 16.00588 * 13 11 10 40 40 H 1.09000 * 113.76845 * 41.05568 * 18 17 15 41 41 H 1.08997 * 113.87002 * 269.67013 * 18 17 15 42 42 H 1.09006 * 113.74427 * 269.15439 * 19 18 17 43 43 H 0.97005 * 120.00070 * 179.97438 * 23 22 20 44 44 H 1.09001 * 113.77388 * 90.38564 * 28 17 15 45 45 H 1.08999 * 113.83676 * 318.92073 * 28 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3034 1.0930 0.0000 4 8 3.5744 0.6587 0.0053 5 6 3.5459 -0.6865 -0.0002 6 6 4.7248 -1.5722 0.0002 7 8 4.5783 -2.7793 0.0004 8 7 5.9647 -1.0439 0.0001 9 6 6.3499 0.4022 0.0793 10 6 7.5332 0.5137 -0.9147 11 6 8.2858 -0.8200 -0.7047 12 1 9.3106 -0.7791 -0.3354 13 6 7.8161 -2.0462 -1.4887 14 6 7.2424 -1.7751 -0.0958 15 6 7.5983 -2.6998 1.0398 16 8 8.5700 -3.4205 0.9532 17 7 6.8368 -2.7260 2.1515 18 6 6.8252 -3.5466 3.3781 19 6 6.1284 -2.3482 4.0477 20 6 4.9911 -2.7379 4.9565 21 1 4.7555 -3.7806 5.1100 22 6 4.2550 -1.7634 5.5964 23 7 4.5419 -0.4936 5.4094 24 14 2.8503 -2.2466 6.7288 25 1 3.3648 -2.4156 8.1115 26 1 1.8135 -1.1834 6.7129 27 1 2.2556 -3.5248 6.2622 28 6 5.6795 -1.9422 2.6322 29 7 2.2930 -1.0786 -0.0002 30 1 -0.3633 -0.0005 1.0277 31 1 -0.3633 0.8903 -0.5133 32 1 -0.3633 -0.8897 -0.5143 33 1 1.9782 2.1229 -0.0004 34 1 6.6699 0.6610 1.0887 35 1 5.5222 1.0380 -0.2352 36 1 8.1710 1.3607 -0.6620 37 1 7.1729 0.5962 -1.9401 38 1 8.5159 -2.8755 -1.5914 39 1 7.1617 -1.8751 -2.3436 40 1 7.8181 -3.7559 3.7760 41 1 6.1989 -4.4359 3.3078 42 1 6.8179 -1.6413 4.5092 43 1 4.0238 0.1921 5.8593 44 1 4.7152 -2.3586 2.3408 45 1 5.7594 -0.8730 2.4358 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001275126454.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:47:31 Heat of formation + Delta-G solvation = 22.508546 kcal Electronic energy + Delta-G solvation = -31933.202060 eV Core-core repulsion = 27726.809708 eV Total energy + Delta-G solvation = -4206.392352 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -44.58966 -42.22315 -40.36949 -39.69206 -38.39523 -36.50653 -34.74297 -34.35713 -32.65440 -31.86358 -30.85088 -28.75796 -27.46590 -27.05200 -26.23601 -24.57401 -24.23927 -22.62975 -22.52402 -21.57016 -21.36287 -19.75422 -18.99472 -18.61575 -18.22905 -18.01724 -17.61862 -17.24287 -16.76768 -16.68490 -16.18655 -15.82079 -15.60396 -15.54757 -15.05435 -14.89218 -14.37137 -14.22933 -14.17948 -14.02938 -13.92506 -13.81120 -13.36889 -13.19446 -13.10165 -12.99844 -12.86013 -12.68979 -12.32150 -12.25298 -12.14306 -12.08376 -11.79233 -11.64910 -11.61041 -11.32568 -11.25376 -10.81698 -10.63808 -10.08513 -9.81833 -9.65272 -8.24202 -6.34496 -0.29052 0.92727 1.11986 1.24672 1.38936 1.39753 1.50241 1.66635 1.82035 1.93698 2.38666 2.49587 2.89082 3.05597 3.21485 3.30987 3.55133 3.64918 3.75268 3.80585 4.07044 4.13964 4.19018 4.29210 4.33557 4.38248 4.41798 4.51773 4.56060 4.59149 4.67482 4.68719 4.70525 4.76243 4.77867 4.81366 4.89728 4.92043 4.97776 5.08853 5.21291 5.30756 5.47488 5.72066 5.96478 6.13307 6.37464 6.68154 6.69940 6.74751 7.03458 7.34196 8.85676 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.007697 B = 0.006026 C = 0.003872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3636.819274 B = 4645.085490 C = 7230.463944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C -0.048 4.048 3 C -0.019 4.019 4 O -0.178 6.178 5 C 0.118 3.882 6 C 0.635 3.365 7 O -0.531 6.531 8 N -0.577 5.577 9 C 0.088 3.912 10 C -0.089 4.089 11 C -0.088 4.088 12 H 0.145 0.855 13 C -0.103 4.103 14 C 0.009 3.991 15 C 0.559 3.441 16 O -0.587 6.587 17 N -0.630 5.630 18 C 0.107 3.893 19 C 0.029 3.971 20 C -0.537 4.537 21 H 0.057 0.943 22 C 0.026 3.974 23 N -0.910 5.910 24 Si 0.953 3.047 25 H -0.269 1.269 26 H -0.278 1.278 27 H -0.275 1.275 28 C 0.139 3.861 29 N -0.447 5.447 30 H 0.078 0.922 31 H 0.117 0.883 32 H 0.068 0.932 33 H 0.281 0.719 34 H 0.078 0.922 35 H 0.112 0.888 36 H 0.131 0.869 37 H 0.105 0.895 38 H 0.116 0.884 39 H 0.122 0.878 40 H 0.073 0.927 41 H 0.070 0.930 42 H 0.045 0.955 43 H 0.266 0.734 44 H 0.045 0.955 45 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.544 13.219 -15.702 20.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.172 4.172 3 C -0.091 4.091 4 O -0.061 6.061 5 C -0.086 4.086 6 C 0.422 3.578 7 O -0.406 6.406 8 N -0.311 5.311 9 C -0.031 4.031 10 C -0.126 4.126 11 C -0.107 4.107 12 H 0.162 0.838 13 C -0.142 4.142 14 C -0.080 4.080 15 C 0.350 3.650 16 O -0.469 6.469 17 N -0.361 5.361 18 C -0.015 4.015 19 C 0.010 3.990 20 C -0.575 4.575 21 H 0.075 0.925 22 C -0.175 4.175 23 N -0.548 5.548 24 Si 0.778 3.222 25 H -0.194 1.194 26 H -0.203 1.203 27 H -0.199 1.199 28 C 0.017 3.983 29 N -0.181 5.181 30 H 0.097 0.903 31 H 0.136 0.864 32 H 0.087 0.913 33 H 0.297 0.703 34 H 0.096 0.904 35 H 0.130 0.870 36 H 0.149 0.851 37 H 0.124 0.876 38 H 0.134 0.866 39 H 0.140 0.860 40 H 0.092 0.908 41 H 0.088 0.912 42 H 0.063 0.937 43 H 0.075 0.925 44 H 0.063 0.937 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -1.249 11.732 -15.818 19.734 hybrid contribution -0.821 -0.210 1.113 1.398 sum -2.070 11.522 -14.706 18.796 Atomic orbital electron populations 1.20287 0.83444 1.05022 1.03826 1.22765 1.00341 0.87342 1.06723 1.26439 0.78712 1.02955 1.00991 1.84518 1.31791 1.21863 1.67935 1.24884 0.94018 0.79725 1.09977 1.15699 0.79986 0.85169 0.76995 1.90895 1.84613 1.14377 1.50760 1.48422 1.01731 1.09929 1.71025 1.23628 0.99778 0.78141 1.01540 1.22519 0.94512 0.95323 1.00293 1.24115 0.97413 0.90510 0.98654 0.83769 1.23564 1.00767 0.99335 0.90491 1.21660 0.86019 1.04072 0.96235 1.19571 0.81933 0.82434 0.81103 1.90605 1.29756 1.45465 1.81118 1.50265 1.31624 1.36698 1.17554 1.23363 1.00117 0.96426 0.81547 1.20415 0.94980 0.92290 0.91332 1.21215 1.15308 0.93257 1.27715 0.92460 1.25685 0.99497 0.94892 0.97415 1.70030 1.41106 1.00053 1.43616 0.85631 0.79077 0.78051 0.79441 1.19375 1.20341 1.19942 1.23248 0.86704 0.93972 0.94425 1.70229 1.00557 1.33962 1.13379 0.90325 0.86434 0.91322 0.70338 0.90380 0.86973 0.85066 0.87626 0.86612 0.86021 0.90822 0.91230 0.93673 0.92499 0.93693 0.92312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.19 10.43 71.24 0.74 -0.45 16 2 C -0.05 -1.23 7.10 41.62 0.30 -0.93 16 3 C -0.02 -0.37 12.10 67.13 0.81 0.44 16 4 O -0.18 -4.65 7.90 -5.03 -0.04 -4.69 16 5 C 0.12 4.22 7.93 87.21 0.69 4.91 16 6 C 0.64 25.13 5.33 86.67 0.46 25.59 16 7 O -0.53 -25.69 16.43 -4.02 -0.07 -25.75 16 8 N -0.58 -18.72 1.81 -765.95 -1.38 -20.10 16 9 C 0.09 1.98 6.55 86.39 0.57 2.55 16 10 C -0.09 -1.25 6.86 31.79 0.22 -1.03 16 11 C -0.09 -1.84 6.92 -9.94 -0.07 -1.91 16 12 H 0.14 2.75 8.14 -2.39 -0.02 2.73 16 13 C -0.10 -2.55 9.82 30.59 0.30 -2.25 16 14 C 0.01 0.31 2.47 3.02 0.01 0.32 16 15 C 0.56 24.36 7.89 87.66 0.69 25.06 16 16 O -0.59 -27.67 17.33 -3.04 -0.05 -27.72 16 17 N -0.63 -29.61 3.61 -836.13 -3.02 -32.63 16 18 C 0.11 5.14 8.40 86.49 0.73 5.86 16 19 C 0.03 1.51 3.60 -10.88 -0.04 1.47 16 20 C -0.54 -29.88 8.77 25.60 0.22 -29.66 16 21 H 0.06 3.17 7.81 -2.91 -0.02 3.15 16 22 C 0.03 1.41 5.46 84.65 0.46 1.88 16 23 N -0.91 -50.73 13.29 21.45 0.28 -50.44 16 24 Si 0.95 43.25 29.54 68.60 2.03 45.27 16 25 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 26 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 27 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 28 C 0.14 6.85 5.45 86.44 0.47 7.32 16 29 N -0.45 -16.52 11.25 -293.29 -3.30 -19.82 16 30 H 0.08 1.36 8.14 -2.38 -0.02 1.34 16 31 H 0.12 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.28 1.66 8.06 -2.91 -0.02 1.64 16 34 H 0.08 1.94 7.65 -2.39 -0.02 1.92 16 35 H 0.11 2.16 5.46 -2.38 -0.01 2.14 16 36 H 0.13 1.04 8.14 -2.39 -0.02 1.02 16 37 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 38 H 0.12 2.98 7.91 -2.39 -0.02 2.96 16 39 H 0.12 2.55 8.14 -2.38 -0.02 2.53 16 40 H 0.07 3.30 8.14 -2.39 -0.02 3.28 16 41 H 0.07 3.36 8.09 -2.39 -0.02 3.34 16 42 H 0.05 2.48 8.14 -2.38 -0.02 2.46 16 43 H 0.27 13.95 8.31 -92.70 -0.77 13.18 16 44 H 0.04 2.48 6.56 -2.39 -0.02 2.47 16 45 H 0.06 2.81 6.64 -2.39 -0.02 2.79 16 Total: -1.00 -82.74 377.31 2.04 -80.70 By element: Atomic # 1 Polarization: 15.00 SS G_CDS: 1.03 Total: 16.02 kcal Atomic # 6 Polarization: 32.60 SS G_CDS: 6.56 Total: 39.16 kcal Atomic # 7 Polarization: -115.58 SS G_CDS: -7.42 Total: -123.00 kcal Atomic # 8 Polarization: -58.00 SS G_CDS: -0.16 Total: -58.16 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 2.03 Total: 45.27 kcal Total: -82.74 2.04 -80.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275126454.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.210 kcal (2) G-P(sol) polarization free energy of solvation -82.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.702 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds