Wall clock time and date at job start Wed Apr 1 2020 03:47:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35234 * 126.08443 * 2 1 4 4 O 1.34300 * 107.21821 * 180.02562 * 3 2 1 5 5 C 1.34548 * 107.65589 * 359.97438 * 4 3 2 6 6 C 1.47460 * 125.71009 * 180.02562 * 5 4 3 7 7 O 1.21593 * 120.00255 * 179.97438 * 6 5 4 8 8 N 1.34773 * 119.99726 * 0.02562 * 6 5 4 9 9 C 1.48153 * 127.83811 * 359.67751 * 8 6 5 10 10 C 1.53988 * 104.81665 * 219.53851 * 9 8 6 11 11 H 1.09000 * 118.03375 * 115.99012 * 10 9 8 12 12 C 1.53008 * 118.30497 * 273.08740 * 10 9 8 13 13 C 1.53000 * 60.55794 * 91.48551 * 12 10 9 14 14 C 1.50704 * 119.53990 * 113.36112 * 13 12 10 15 15 O 1.21280 * 119.99879 * 289.92604 * 14 13 12 16 16 N 1.34775 * 119.99831 * 109.92701 * 14 13 12 17 17 C 1.47070 * 136.05728 * 359.62664 * 16 14 13 18 18 C 1.53232 * 88.08092 * 207.20388 * 17 16 14 19 19 C 1.50699 * 114.50657 * 220.45555 * 18 17 16 20 20 H 1.08005 * 119.99761 * 93.85170 * 19 18 17 21 21 C 1.37881 * 120.00214 * 273.85006 * 19 18 17 22 22 N 1.31513 * 119.99956 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 119.99863 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.47382 * 90.00107 * 23 21 19 25 25 H 1.48503 * 109.47333 * 210.00028 * 23 21 19 26 26 H 1.48496 * 109.47590 * 329.99908 * 23 21 19 27 27 C 1.47069 * 136.05684 * 179.97438 * 16 14 13 28 28 C 1.48142 * 127.83890 * 179.97438 * 8 6 5 29 29 N 1.31286 * 108.58272 * 0.02562 * 5 4 3 30 30 H 1.09003 * 109.47452 * 269.99888 * 1 2 3 31 31 H 1.09000 * 109.47573 * 30.00351 * 1 2 3 32 32 H 1.09005 * 109.47265 * 149.99891 * 1 2 3 33 33 H 1.08002 * 126.38800 * 0.02562 * 3 2 1 34 34 H 1.08992 * 110.40652 * 338.36991 * 9 8 6 35 35 H 1.09000 * 110.40301 * 100.80393 * 9 8 6 36 36 H 1.09003 * 117.44532 * 343.83472 * 12 10 9 37 37 H 1.08998 * 117.40079 * 199.15167 * 12 10 9 38 38 H 1.08998 * 113.46897 * 321.94035 * 17 16 14 39 39 H 1.09007 * 113.46351 * 92.37816 * 17 16 14 40 40 H 1.09005 * 114.01712 * 87.72210 * 18 17 16 41 41 H 0.96999 * 119.99532 * 180.02562 * 22 21 19 42 42 H 1.08998 * 113.47163 * 267.62642 * 27 16 14 43 43 H 1.09003 * 113.46505 * 38.01053 * 27 16 14 44 44 H 1.09007 * 110.40685 * 259.19746 * 28 8 6 45 45 H 1.09000 * 110.40904 * 21.62948 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3035 1.0929 0.0000 4 8 3.5743 0.6586 -0.0006 5 6 3.5459 -0.6866 -0.0003 6 6 4.7248 -1.5724 -0.0003 7 8 4.5784 -2.7794 0.0004 8 7 5.9646 -1.0440 0.0001 9 6 6.3420 0.3887 -0.0061 10 6 7.5548 0.4723 -0.9513 11 1 7.4507 1.0527 -1.8681 12 6 8.9478 0.2273 -0.3676 13 6 8.1597 -0.9471 -0.9514 14 6 8.6585 -1.6297 -2.1989 15 8 8.6133 -1.0532 -3.2650 16 7 9.1548 -2.8809 -2.1298 17 6 9.3778 -3.8746 -1.0688 18 6 10.5193 -4.4469 -1.9158 19 6 10.5969 -5.9518 -1.9252 20 1 10.1109 -6.5127 -2.7098 21 6 11.2884 -6.6127 -0.9321 22 7 11.8798 -5.9297 0.0236 23 14 11.3840 -8.4782 -0.9434 24 1 12.5768 -8.9081 -1.7164 25 1 11.4919 -8.9768 0.4512 26 1 10.1593 -9.0329 -1.5739 27 6 9.7174 -3.8509 -3.0813 28 6 7.2593 -1.7640 0.0008 29 7 2.2929 -1.0786 -0.0002 30 1 -0.3634 0.0000 1.0277 31 1 -0.3634 0.8899 -0.5139 32 1 -0.3634 -0.8900 -0.5139 33 1 1.9782 2.1228 0.0004 34 1 5.5214 0.9961 -0.3877 35 1 6.6215 0.7124 0.9964 36 1 9.0533 0.2722 0.7163 37 1 9.8019 0.5921 -0.9381 38 1 9.7138 -3.4376 -0.1285 39 1 8.5447 -4.5656 -0.9393 40 1 11.4828 -3.9669 -1.7442 41 1 12.3666 -6.3947 0.7220 42 1 8.9758 -4.5355 -3.4929 43 1 10.3410 -3.3937 -3.8496 44 1 7.6842 -1.7811 1.0045 45 1 7.1301 -2.7787 -0.3756 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001275126931.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:47:39 Heat of formation + Delta-G solvation = 45.196222 kcal Electronic energy + Delta-G solvation = -30024.227484 eV Core-core repulsion = 25818.818943 eV Total energy + Delta-G solvation = -4205.408541 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.84139 -40.95273 -39.33605 -38.41229 -36.86491 -35.76075 -33.85690 -32.71130 -32.04627 -29.96943 -28.74958 -28.07343 -26.75990 -25.42478 -25.01845 -24.00811 -22.58532 -21.91193 -21.29590 -20.27872 -19.82085 -18.41047 -17.56774 -17.35538 -17.11744 -16.83900 -16.25912 -16.13003 -15.79741 -15.38350 -14.84268 -14.74958 -14.53431 -14.18444 -13.92600 -13.72836 -13.47063 -13.45968 -13.29701 -12.70764 -12.60937 -12.37045 -12.34569 -11.95116 -11.84752 -11.52735 -11.46470 -11.29681 -10.99956 -10.94307 -10.88564 -10.78064 -10.68712 -10.35927 -10.11067 -9.66437 -9.33662 -9.24922 -9.12337 -8.97117 -8.59471 -7.93154 -6.19311 -4.24582 0.53164 1.85607 1.91161 2.47874 2.76713 2.85777 3.24749 3.29740 3.32906 3.37073 3.50542 3.72431 4.21246 4.27561 4.33373 4.34774 4.40461 4.61566 4.72702 4.89772 4.94427 5.10410 5.13658 5.15953 5.17184 5.27537 5.39645 5.44620 5.50874 5.52825 5.65687 5.74947 5.75917 5.80598 5.93561 6.01831 6.13893 6.23683 6.41084 6.54103 6.61347 6.79448 6.94722 7.18953 7.53173 7.66529 7.78635 8.16400 8.42837 8.67157 8.79510 9.42544 10.90439 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.014599 B = 0.002626 C = 0.002381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1917.529229 B =10660.204568 C =11757.528367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.018 4.018 3 C -0.054 4.054 4 O -0.183 6.183 5 C 0.150 3.850 6 C 0.636 3.364 7 O -0.482 6.482 8 N -0.611 5.611 9 C 0.122 3.878 10 C -0.144 4.144 11 H 0.133 0.867 12 C -0.103 4.103 13 C -0.175 4.175 14 C 0.577 3.423 15 O -0.562 6.562 16 N -0.636 5.636 17 C 0.097 3.903 18 C 0.037 3.963 19 C -0.517 4.517 20 H 0.064 0.936 21 C 0.069 3.931 22 N -0.886 5.886 23 Si 0.896 3.104 24 H -0.279 1.279 25 H -0.285 1.285 26 H -0.272 1.272 27 C 0.101 3.899 28 C 0.147 3.853 29 N -0.410 5.410 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.224 0.776 34 H 0.096 0.904 35 H 0.087 0.913 36 H 0.107 0.893 37 H 0.113 0.887 38 H 0.062 0.938 39 H 0.076 0.924 40 H 0.069 0.931 41 H 0.264 0.736 42 H 0.075 0.925 43 H 0.058 0.942 44 H 0.093 0.907 45 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.519 18.385 4.603 24.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.141 4.141 3 C -0.126 4.126 4 O -0.068 6.068 5 C -0.056 4.056 6 C 0.420 3.580 7 O -0.353 6.353 8 N -0.346 5.346 9 C 0.000 4.000 10 C -0.164 4.164 11 H 0.151 0.849 12 C -0.140 4.140 13 C -0.180 4.180 14 C 0.366 3.634 15 O -0.443 6.443 16 N -0.368 5.368 17 C -0.025 4.025 18 C 0.017 3.983 19 C -0.555 4.555 20 H 0.082 0.918 21 C -0.135 4.135 22 N -0.522 5.522 23 Si 0.723 3.277 24 H -0.205 1.205 25 H -0.211 1.211 26 H -0.196 1.196 27 C -0.021 4.021 28 C 0.026 3.974 29 N -0.143 5.143 30 H 0.097 0.903 31 H 0.097 0.903 32 H 0.098 0.902 33 H 0.240 0.760 34 H 0.114 0.886 35 H 0.105 0.895 36 H 0.126 0.874 37 H 0.132 0.868 38 H 0.081 0.919 39 H 0.094 0.906 40 H 0.087 0.913 41 H 0.074 0.926 42 H 0.093 0.907 43 H 0.076 0.924 44 H 0.111 0.889 45 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -15.819 17.486 4.214 23.953 hybrid contribution 0.113 -0.138 0.067 0.191 sum -15.706 17.348 4.281 23.790 Atomic orbital electron populations 1.20160 0.85714 1.03834 1.03291 1.22072 0.98694 0.87656 1.05711 1.25333 0.80263 1.01386 1.05598 1.84564 1.30384 1.23481 1.68324 1.25514 0.94734 0.78629 1.06724 1.15456 0.78927 0.85392 0.78213 1.90961 1.83687 1.12058 1.48618 1.49000 1.04630 1.08873 1.72076 1.22072 0.96677 0.81476 0.99731 1.23689 0.92794 0.97659 1.02230 0.84937 1.23111 0.93868 0.95625 1.01431 1.22607 1.05218 0.90971 0.99169 1.18414 0.76820 0.80621 0.87586 1.90645 1.58113 1.65378 1.30142 1.49885 1.59255 1.11717 1.15930 1.23634 0.99946 0.86719 0.92230 1.20286 0.93194 0.96073 0.88713 1.20896 1.33892 0.89897 1.10821 0.91799 1.25016 0.94483 0.98712 0.95252 1.69943 1.33519 1.35758 1.13011 0.86533 0.78677 0.85128 0.77369 1.20501 1.21116 1.19646 1.23401 0.95837 0.87534 0.95331 1.21859 0.79690 0.96838 0.99059 1.70310 0.99546 1.31343 1.13113 0.90336 0.90341 0.90164 0.75953 0.88552 0.89482 0.87433 0.86844 0.91930 0.90598 0.91325 0.92626 0.90730 0.92358 0.88859 0.88112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.44 10.43 36.00 0.38 -0.07 16 2 C -0.02 -0.17 7.10 -82.96 -0.59 -0.76 16 3 C -0.05 -0.40 12.10 29.66 0.36 -0.04 16 4 O -0.18 -1.87 7.92 5.05 0.04 -1.83 16 5 C 0.15 2.06 7.92 -14.03 -0.11 1.95 16 6 C 0.64 9.97 7.91 -12.51 -0.10 9.88 16 7 O -0.48 -9.33 17.34 5.28 0.09 -9.24 16 8 N -0.61 -8.24 3.32 -170.79 -0.57 -8.81 16 9 C 0.12 1.21 6.48 -2.62 -0.02 1.19 16 10 C -0.14 -1.64 6.85 -89.42 -0.61 -2.25 16 11 H 0.13 1.55 8.14 -51.93 -0.42 1.13 16 12 C -0.10 -1.12 9.87 -26.73 -0.26 -1.38 16 13 C -0.18 -2.57 2.71 -154.24 -0.42 -2.99 16 14 C 0.58 11.21 7.68 -10.98 -0.08 11.13 16 15 O -0.56 -12.52 17.66 5.56 0.10 -12.42 16 16 N -0.64 -12.87 3.61 -185.36 -0.67 -13.54 16 17 C 0.10 2.01 6.40 -8.64 -0.06 1.95 16 18 C 0.04 0.84 3.76 -91.39 -0.34 0.50 16 19 C -0.52 -13.11 8.84 -34.44 -0.30 -13.41 16 20 H 0.06 1.60 7.81 -52.48 -0.41 1.19 16 21 C 0.07 1.79 5.46 -17.82 -0.10 1.69 16 22 N -0.89 -23.80 13.26 55.43 0.74 -23.07 16 23 Si 0.90 20.17 29.54 -169.99 -5.02 15.15 16 24 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 25 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 26 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 27 C 0.10 2.11 8.19 -8.49 -0.07 2.04 16 28 C 0.15 2.09 6.06 -2.39 -0.01 2.07 16 29 N -0.41 -5.82 11.25 -8.03 -0.09 -5.91 16 30 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.22 0.54 8.06 -52.49 -0.42 0.11 16 34 H 0.10 0.87 5.56 -51.93 -0.29 0.58 16 35 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.11 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.11 1.25 8.14 -51.93 -0.42 0.83 16 38 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 39 H 0.08 1.59 8.06 -51.92 -0.42 1.18 16 40 H 0.07 1.72 8.11 -51.93 -0.42 1.30 16 41 H 0.26 6.78 8.31 -40.82 -0.34 6.44 16 42 H 0.07 1.53 8.10 -51.93 -0.42 1.11 16 43 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 44 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 45 H 0.10 1.70 6.57 -51.93 -0.34 1.36 16 LS Contribution 384.96 15.07 5.80 5.80 Total: -1.00 -33.74 384.96 -8.01 -41.75 By element: Atomic # 1 Polarization: 6.69 SS G_CDS: -6.09 Total: 0.61 kcal Atomic # 6 Polarization: 13.85 SS G_CDS: -2.34 Total: 11.51 kcal Atomic # 7 Polarization: -50.74 SS G_CDS: -0.59 Total: -51.33 kcal Atomic # 8 Polarization: -23.72 SS G_CDS: 0.23 Total: -23.49 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -5.02 Total: 15.15 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -33.74 -8.01 -41.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275126931.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.944 kcal (2) G-P(sol) polarization free energy of solvation -33.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.747 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds