Wall clock time and date at job start Wed Apr 1 2020 03:47:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35234 * 126.08443 * 2 1 4 4 O 1.34300 * 107.21821 * 180.02562 * 3 2 1 5 5 C 1.34548 * 107.65589 * 359.97438 * 4 3 2 6 6 C 1.47460 * 125.71009 * 180.02562 * 5 4 3 7 7 O 1.21593 * 120.00255 * 179.97438 * 6 5 4 8 8 N 1.34773 * 119.99726 * 0.02562 * 6 5 4 9 9 C 1.48153 * 127.83811 * 359.67751 * 8 6 5 10 10 C 1.53988 * 104.81665 * 219.53851 * 9 8 6 11 11 H 1.09000 * 118.03375 * 115.99012 * 10 9 8 12 12 C 1.53008 * 118.30497 * 273.08740 * 10 9 8 13 13 C 1.53000 * 60.55794 * 91.48551 * 12 10 9 14 14 C 1.50704 * 119.53990 * 113.36112 * 13 12 10 15 15 O 1.21280 * 119.99879 * 289.92604 * 14 13 12 16 16 N 1.34775 * 119.99831 * 109.92701 * 14 13 12 17 17 C 1.47070 * 136.05728 * 359.62664 * 16 14 13 18 18 C 1.53232 * 88.08092 * 207.20388 * 17 16 14 19 19 C 1.50699 * 114.50657 * 220.45555 * 18 17 16 20 20 H 1.08005 * 119.99761 * 93.85170 * 19 18 17 21 21 C 1.37881 * 120.00214 * 273.85006 * 19 18 17 22 22 N 1.31513 * 119.99956 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 119.99863 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.47382 * 90.00107 * 23 21 19 25 25 H 1.48503 * 109.47333 * 210.00028 * 23 21 19 26 26 H 1.48496 * 109.47590 * 329.99908 * 23 21 19 27 27 C 1.47069 * 136.05684 * 179.97438 * 16 14 13 28 28 C 1.48142 * 127.83890 * 179.97438 * 8 6 5 29 29 N 1.31286 * 108.58272 * 0.02562 * 5 4 3 30 30 H 1.09003 * 109.47452 * 269.99888 * 1 2 3 31 31 H 1.09000 * 109.47573 * 30.00351 * 1 2 3 32 32 H 1.09005 * 109.47265 * 149.99891 * 1 2 3 33 33 H 1.08002 * 126.38800 * 0.02562 * 3 2 1 34 34 H 1.08992 * 110.40652 * 338.36991 * 9 8 6 35 35 H 1.09000 * 110.40301 * 100.80393 * 9 8 6 36 36 H 1.09003 * 117.44532 * 343.83472 * 12 10 9 37 37 H 1.08998 * 117.40079 * 199.15167 * 12 10 9 38 38 H 1.08998 * 113.46897 * 321.94035 * 17 16 14 39 39 H 1.09007 * 113.46351 * 92.37816 * 17 16 14 40 40 H 1.09005 * 114.01712 * 87.72210 * 18 17 16 41 41 H 0.96999 * 119.99532 * 180.02562 * 22 21 19 42 42 H 1.08998 * 113.47163 * 267.62642 * 27 16 14 43 43 H 1.09003 * 113.46505 * 38.01053 * 27 16 14 44 44 H 1.09007 * 110.40685 * 259.19746 * 28 8 6 45 45 H 1.09000 * 110.40904 * 21.62948 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3035 1.0929 0.0000 4 8 3.5743 0.6586 -0.0006 5 6 3.5459 -0.6866 -0.0003 6 6 4.7248 -1.5724 -0.0003 7 8 4.5784 -2.7794 0.0004 8 7 5.9646 -1.0440 0.0001 9 6 6.3420 0.3887 -0.0061 10 6 7.5548 0.4723 -0.9513 11 1 7.4507 1.0527 -1.8681 12 6 8.9478 0.2273 -0.3676 13 6 8.1597 -0.9471 -0.9514 14 6 8.6585 -1.6297 -2.1989 15 8 8.6133 -1.0532 -3.2650 16 7 9.1548 -2.8809 -2.1298 17 6 9.3778 -3.8746 -1.0688 18 6 10.5193 -4.4469 -1.9158 19 6 10.5969 -5.9518 -1.9252 20 1 10.1109 -6.5127 -2.7098 21 6 11.2884 -6.6127 -0.9321 22 7 11.8798 -5.9297 0.0236 23 14 11.3840 -8.4782 -0.9434 24 1 12.5768 -8.9081 -1.7164 25 1 11.4919 -8.9768 0.4512 26 1 10.1593 -9.0329 -1.5739 27 6 9.7174 -3.8509 -3.0813 28 6 7.2593 -1.7640 0.0008 29 7 2.2929 -1.0786 -0.0002 30 1 -0.3634 0.0000 1.0277 31 1 -0.3634 0.8899 -0.5139 32 1 -0.3634 -0.8900 -0.5139 33 1 1.9782 2.1228 0.0004 34 1 5.5214 0.9961 -0.3877 35 1 6.6215 0.7124 0.9964 36 1 9.0533 0.2722 0.7163 37 1 9.8019 0.5921 -0.9381 38 1 9.7138 -3.4376 -0.1285 39 1 8.5447 -4.5656 -0.9393 40 1 11.4828 -3.9669 -1.7442 41 1 12.3666 -6.3947 0.7220 42 1 8.9758 -4.5355 -3.4929 43 1 10.3410 -3.3937 -3.8496 44 1 7.6842 -1.7811 1.0045 45 1 7.1301 -2.7787 -0.3756 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001275126931.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:47:38 Heat of formation + Delta-G solvation = 20.189741 kcal Electronic energy + Delta-G solvation = -30025.311846 eV Core-core repulsion = 25818.818943 eV Total energy + Delta-G solvation = -4206.492903 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -44.63062 -42.11312 -40.80383 -39.72720 -38.44803 -36.55458 -34.93699 -34.66976 -32.78153 -31.45612 -29.92293 -28.94236 -27.60141 -27.20951 -26.72791 -24.96884 -23.94867 -22.69014 -22.33663 -21.40240 -21.21052 -19.74690 -18.79722 -18.59912 -18.20896 -18.05866 -17.71845 -17.09425 -16.96412 -16.79737 -16.52039 -16.14304 -15.55616 -15.29566 -15.17329 -14.80603 -14.62190 -14.23034 -14.17970 -14.10662 -13.93895 -13.56583 -13.32238 -13.25963 -13.09858 -12.99644 -12.76765 -12.75377 -12.63359 -12.28704 -12.20122 -11.98204 -11.83383 -11.78810 -11.35946 -11.14005 -11.07573 -10.76289 -10.54348 -10.24071 -9.89764 -9.63908 -8.18113 -6.28413 -0.33907 0.93966 1.08374 1.37753 1.45608 1.48148 1.57087 1.65509 1.84036 1.90385 2.34469 2.45111 2.89743 3.11687 3.21934 3.34863 3.40040 3.63324 3.66589 3.76794 3.91701 4.18743 4.22753 4.29763 4.36303 4.40294 4.50111 4.53813 4.57131 4.58597 4.65354 4.71911 4.74637 4.78375 4.80057 4.81652 4.84088 4.91328 4.94155 5.04769 5.08475 5.30376 5.57402 5.80336 5.94327 6.21845 6.32870 6.62938 6.78911 6.82484 7.06902 7.41168 8.91756 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.014599 B = 0.002626 C = 0.002381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1917.529229 B =10660.204568 C =11757.528367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.047 4.047 3 C -0.014 4.014 4 O -0.176 6.176 5 C 0.117 3.883 6 C 0.632 3.368 7 O -0.540 6.540 8 N -0.609 5.609 9 C 0.125 3.875 10 C -0.124 4.124 11 H 0.130 0.870 12 C -0.074 4.074 13 C -0.211 4.211 14 C 0.571 3.429 15 O -0.596 6.596 16 N -0.639 5.639 17 C 0.117 3.883 18 C 0.028 3.972 19 C -0.531 4.531 20 H 0.062 0.938 21 C 0.025 3.975 22 N -0.913 5.913 23 Si 0.955 3.045 24 H -0.275 1.275 25 H -0.283 1.283 26 H -0.270 1.270 27 C 0.103 3.897 28 C 0.150 3.850 29 N -0.447 5.447 30 H 0.088 0.912 31 H 0.112 0.888 32 H 0.063 0.937 33 H 0.282 0.718 34 H 0.109 0.891 35 H 0.124 0.876 36 H 0.144 0.856 37 H 0.112 0.888 38 H 0.070 0.930 39 H 0.069 0.931 40 H 0.046 0.954 41 H 0.266 0.734 42 H 0.076 0.924 43 H 0.060 0.940 44 H 0.119 0.881 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.729 21.463 5.898 27.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.172 4.172 3 C -0.086 4.086 4 O -0.059 6.059 5 C -0.087 4.087 6 C 0.418 3.582 7 O -0.417 6.417 8 N -0.342 5.342 9 C 0.005 3.995 10 C -0.143 4.143 11 H 0.147 0.853 12 C -0.112 4.112 13 C -0.215 4.215 14 C 0.362 3.638 15 O -0.479 6.479 16 N -0.370 5.370 17 C -0.005 4.005 18 C 0.009 3.991 19 C -0.569 4.569 20 H 0.080 0.920 21 C -0.176 4.176 22 N -0.551 5.551 23 Si 0.780 3.220 24 H -0.201 1.201 25 H -0.208 1.208 26 H -0.194 1.194 27 C -0.019 4.019 28 C 0.028 3.972 29 N -0.182 5.182 30 H 0.107 0.893 31 H 0.130 0.870 32 H 0.082 0.918 33 H 0.298 0.702 34 H 0.127 0.873 35 H 0.142 0.858 36 H 0.162 0.838 37 H 0.131 0.869 38 H 0.088 0.912 39 H 0.087 0.913 40 H 0.064 0.936 41 H 0.075 0.925 42 H 0.094 0.906 43 H 0.079 0.921 44 H 0.137 0.863 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -16.997 20.612 5.508 27.278 hybrid contribution 0.399 -0.937 -0.418 1.101 sum -16.598 19.674 5.090 26.239 Atomic orbital electron populations 1.20296 0.83446 1.04723 1.04249 1.22765 1.00296 0.87300 1.06793 1.26479 0.78573 1.02963 1.00575 1.84545 1.31815 1.21728 1.67832 1.24784 0.93821 0.79732 1.10410 1.15745 0.79927 0.85149 0.77409 1.90907 1.84739 1.14470 1.51545 1.49077 1.03800 1.10444 1.70867 1.22364 0.96306 0.79414 1.01441 1.23847 0.93847 0.94186 1.02442 0.85253 1.23324 0.93312 0.91129 1.03402 1.22484 1.08461 0.92455 0.98096 1.19259 0.75667 0.79868 0.88973 1.90611 1.59440 1.65878 1.31989 1.49896 1.59769 1.12211 1.15173 1.23270 0.98474 0.86578 0.92218 1.20157 0.93005 0.95165 0.90760 1.21174 1.33817 0.91136 1.10759 0.92009 1.25695 0.94294 1.02613 0.94997 1.70029 1.34279 1.37198 1.13584 0.85603 0.78628 0.80406 0.77325 1.20070 1.20844 1.19438 1.23262 0.95695 0.87986 0.94999 1.21792 0.80228 0.95163 0.99990 1.70254 1.00528 1.34026 1.13363 0.89305 0.86962 0.91770 0.70249 0.87302 0.85770 0.83838 0.86931 0.91201 0.91300 0.93569 0.92526 0.90597 0.92147 0.86284 0.91735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.68 10.43 71.24 0.74 0.06 16 2 C -0.05 -0.83 7.10 41.62 0.30 -0.53 16 3 C -0.01 -0.15 12.10 67.13 0.81 0.66 16 4 O -0.18 -3.09 7.92 -4.86 -0.04 -3.13 16 5 C 0.12 3.16 7.92 87.21 0.69 3.85 16 6 C 0.63 20.39 7.91 86.67 0.69 21.08 16 7 O -0.54 -22.42 17.34 -4.01 -0.07 -22.49 16 8 N -0.61 -15.99 3.32 -812.51 -2.70 -18.69 16 9 C 0.12 2.08 6.48 86.40 0.56 2.64 16 10 C -0.12 -2.48 6.85 -10.02 -0.07 -2.55 16 11 H 0.13 2.73 8.14 -2.39 -0.02 2.71 16 12 C -0.07 -1.38 9.87 30.60 0.30 -1.08 16 13 C -0.21 -5.96 2.71 -52.01 -0.14 -6.11 16 14 C 0.57 22.51 7.68 87.66 0.67 23.19 16 15 O -0.60 -26.99 17.66 -3.03 -0.05 -27.05 16 16 N -0.64 -26.64 3.61 -858.75 -3.10 -29.75 16 17 C 0.12 5.00 6.40 83.09 0.53 5.53 16 18 C 0.03 1.36 3.76 -11.29 -0.04 1.32 16 19 C -0.53 -27.54 8.84 25.60 0.23 -27.31 16 20 H 0.06 3.16 7.81 -2.91 -0.02 3.13 16 21 C 0.02 1.30 5.46 84.66 0.46 1.76 16 22 N -0.91 -49.71 13.26 21.45 0.28 -49.43 16 23 Si 0.95 41.73 29.54 68.60 2.03 43.75 16 24 H -0.28 -11.77 7.11 99.48 0.71 -11.07 16 25 H -0.28 -12.17 7.11 99.48 0.71 -11.47 16 26 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 27 C 0.10 4.47 8.19 83.19 0.68 5.15 16 28 C 0.15 4.22 6.06 86.55 0.52 4.74 16 29 N -0.45 -12.72 11.25 -293.29 -3.30 -16.02 16 30 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.11 0.30 8.14 -2.39 -0.02 0.28 16 32 H 0.06 0.83 8.14 -2.38 -0.02 0.81 16 33 H 0.28 -0.58 8.06 -2.91 -0.02 -0.61 16 34 H 0.11 1.58 5.56 -2.39 -0.01 1.56 16 35 H 0.12 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.14 1.68 8.14 -2.39 -0.02 1.66 16 37 H 0.11 2.18 8.14 -2.39 -0.02 2.16 16 38 H 0.07 2.85 8.14 -2.39 -0.02 2.83 16 39 H 0.07 3.03 8.06 -2.38 -0.02 3.01 16 40 H 0.05 2.40 8.11 -2.38 -0.02 2.39 16 41 H 0.27 13.75 8.31 -92.71 -0.77 12.98 16 42 H 0.08 3.25 8.10 -2.39 -0.02 3.23 16 43 H 0.06 2.56 8.14 -2.39 -0.02 2.54 16 44 H 0.12 2.68 8.14 -2.38 -0.02 2.66 16 45 H 0.06 2.29 6.57 -2.39 -0.02 2.27 16 Total: -1.00 -79.35 384.96 1.01 -78.34 By element: Atomic # 1 Polarization: 11.04 SS G_CDS: 1.02 Total: 12.06 kcal Atomic # 6 Polarization: 25.47 SS G_CDS: 6.94 Total: 32.40 kcal Atomic # 7 Polarization: -105.07 SS G_CDS: -8.82 Total: -113.88 kcal Atomic # 8 Polarization: -52.51 SS G_CDS: -0.16 Total: -52.67 kcal Atomic # 14 Polarization: 41.73 SS G_CDS: 2.03 Total: 43.75 kcal Total: -79.35 1.01 -78.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275126931.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.531 kcal (2) G-P(sol) polarization free energy of solvation -79.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.341 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds