Wall clock time and date at job start Wed Apr 1 2020 03:45:31
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50694 * 1
3 3 C 1.41264 * 128.07900 * 2 1
4 4 N 1.30126 * 106.59383 * 180.23149 * 3 2 1
5 5 O 1.20891 * 111.98026 * 359.77842 * 4 3 2
6 6 C 1.34640 * 111.46789 * 0.02562 * 5 4 3
7 7 C 1.47512 * 126.94373 * 179.97438 * 6 5 4
8 8 O 1.21583 * 120.00067 * 180.02562 * 7 6 5
9 9 N 1.34777 * 119.99606 * 0.29159 * 7 6 5
10 10 C 1.48140 * 127.84091 * 359.41166 * 9 7 6
11 11 C 1.53986 * 104.82074 * 219.53263 * 10 9 7
12 12 H 1.08998 * 118.03328 * 115.98059 * 11 10 9
13 13 C 1.52997 * 118.30976 * 273.09008 * 11 10 9
14 14 C 1.52994 * 60.55847 * 91.48061 * 13 11 10
15 15 C 1.50696 * 119.53916 * 113.36764 * 14 13 11
16 16 O 1.21285 * 120.00330 * 289.92653 * 15 14 13
17 17 N 1.34780 * 120.00289 * 109.92353 * 15 14 13
18 18 C 1.47063 * 136.05693 * 359.63099 * 17 15 14
19 19 C 1.53237 * 88.08547 * 207.20317 * 18 17 15
20 20 C 1.50703 * 114.50613 * 220.45633 * 19 18 17
21 21 H 1.08000 * 119.99660 * 93.84572 * 20 19 18
22 22 C 1.37873 * 119.99995 * 273.84155 * 20 19 18
23 23 N 1.31514 * 120.00249 * 0.02562 * 22 20 19
24 24 Si 1.86796 * 120.00021 * 179.97438 * 22 20 19
25 25 H 1.48504 * 109.46962 * 90.00111 * 24 22 20
26 26 H 1.48496 * 109.47350 * 210.00216 * 24 22 20
27 27 H 1.48498 * 109.47355 * 330.00512 * 24 22 20
28 28 C 1.47068 * 136.05944 * 180.02562 * 17 15 14
29 29 C 1.48146 * 127.83697 * 179.72480 * 9 7 6
30 30 H 1.08995 * 109.47478 * 270.12932 * 1 2 3
31 31 H 1.09002 * 109.47048 * 30.13527 * 1 2 3
32 32 H 1.09007 * 109.47104 * 150.13036 * 1 2 3
33 33 H 1.08000 * 126.70386 * 359.97438 * 3 2 1
34 34 H 1.08997 * 110.41083 * 338.36503 * 10 9 7
35 35 H 1.09007 * 110.41200 * 100.79965 * 10 9 7
36 36 H 1.09009 * 117.44271 * 343.82953 * 13 11 10
37 37 H 1.09000 * 117.40844 * 199.14770 * 13 11 10
38 38 H 1.09005 * 113.46638 * 321.93581 * 18 17 15
39 39 H 1.09001 * 113.47283 * 92.37411 * 18 17 15
40 40 H 1.09001 * 114.01845 * 87.71051 * 19 18 17
41 41 H 0.96998 * 120.00252 * 179.97438 * 23 22 20
42 42 H 1.09004 * 113.46251 * 267.62606 * 28 17 15
43 43 H 1.08998 * 113.46806 * 38.00347 * 28 17 15
44 44 H 1.09001 * 110.40953 * 259.20315 * 29 9 7
45 45 H 1.09009 * 110.40513 * 21.51706 * 29 9 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5069 0.0000 0.0000
3 6 2.3782 1.1120 0.0000
4 7 3.5890 0.6354 -0.0050
5 8 3.5995 -0.5735 -0.0037
6 6 2.3508 -1.0771 0.0020
7 6 1.9695 -2.5020 0.0046
8 8 0.7952 -2.8171 0.0094
9 7 2.9229 -3.4547 0.0071
10 6 4.3927 -3.2695 -0.0044
11 6 4.9207 -4.3681 -0.9453
12 1 5.4174 -4.0596 -1.8652
13 6 5.2156 -5.7486 -0.3554
14 6 3.8301 -5.4594 -0.9365
15 6 3.3796 -6.1837 -2.1789
16 8 3.8943 -5.9321 -3.2479
17 7 2.4047 -7.1112 -2.1021
18 6 1.5694 -7.6837 -1.0357
19 6 1.4626 -8.9609 -1.8756
20 6 0.0955 -9.5952 -1.8776
21 1 -0.6086 -9.3581 -2.6614
22 6 -0.2561 -10.4783 -0.8789
23 7 0.6012 -10.7668 0.0758
24 14 -1.9508 -11.2640 -0.8810
25 1 -1.9061 -12.5351 -1.6475
26 1 -2.3688 -11.5430 0.5164
27 1 -2.9248 -10.3386 -1.5136
28 6 1.7130 -8.0012 -3.0467
29 6 2.7388 -4.9246 0.0155
30 1 -0.3634 0.0023 1.0276
31 1 -0.3633 0.8888 -0.5159
32 1 -0.3634 -0.8912 -0.5118
33 1 2.0947 2.1541 -0.0004
34 1 4.6485 -2.2834 -0.3919
35 1 4.8005 -3.4026 0.9977
36 1 5.2998 -5.8241 0.7288
37 1 5.8714 -6.4077 -0.9243
38 1 2.1031 -7.8272 -0.0961
39 1 0.6176 -7.1686 -0.9059
40 1 2.2683 -9.6743 -1.7027
41 1 0.3536 -11.3878 0.7786
42 1 0.7998 -7.5714 -3.4586
43 1 2.3682 -8.4132 -3.8142
44 1 2.8843 -5.3201 1.0208
45 1 1.7474 -5.1856 -0.3550
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001275519277.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:45:31
Heat of formation + Delta-G solvation = 59.812797 kcal
Electronic energy + Delta-G solvation = -30324.517690 eV
Core-core repulsion = 26119.742972 eV
Total energy + Delta-G solvation = -4204.774718 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 345.152 amu
Computer time = 1.05 seconds
Orbital eigenvalues (eV)
-46.11298 -42.09218 -40.79884 -39.72586 -38.42595 -35.91473 -34.92657 -34.65515
-33.36462 -31.42527 -29.89184 -29.40810 -27.60879 -27.20204 -26.70475 -24.75357
-24.08909 -23.13239 -22.31975 -21.35946 -21.26693 -19.77888 -18.91581 -18.88036
-18.67875 -17.86115 -17.56202 -16.96256 -16.81745 -16.69220 -16.51788 -16.13977
-15.42715 -15.22464 -14.91761 -14.78220 -14.49901 -14.31054 -14.19750 -14.15240
-13.91131 -13.72827 -13.44171 -13.27857 -13.22091 -12.98792 -12.74213 -12.72303
-12.61899 -12.35546 -12.18458 -11.81967 -11.70580 -11.47407 -11.32510 -11.09188
-11.05145 -10.74172 -10.64644 -10.52670 -10.01987 -9.61938 -8.16547 -6.27093
-0.39788 1.00850 1.21819 1.40943 1.47111 1.49627 1.58537 1.72018
1.81828 1.97464 2.38276 2.46461 3.10925 3.13389 3.25114 3.28567
3.41837 3.43022 3.61358 3.73687 3.89147 3.95245 4.20957 4.21286
4.27628 4.37982 4.42665 4.52545 4.56814 4.62428 4.67132 4.69900
4.73340 4.77358 4.81343 4.82927 4.86544 4.90134 4.96316 5.06925
5.10265 5.23047 5.58972 5.81706 6.09258 6.23233 6.56675 6.80445
6.84303 6.94877 7.08913 7.42641 8.93295
Molecular weight = 345.15amu
Principal moments of inertia in cm(-1)
A = 0.013678 B = 0.002836 C = 0.002521
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2046.635413 B = 9871.039467 C =11104.114662
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.087 4.087
2 C -0.117 4.117
3 C 0.003 3.997
4 N -0.360 5.360
5 O 0.109 5.891
6 C -0.105 4.105
7 C 0.621 3.379
8 O -0.541 6.541
9 N -0.613 5.613
10 C 0.126 3.874
11 C -0.126 4.126
12 H 0.127 0.873
13 C -0.078 4.078
14 C -0.208 4.208
15 C 0.571 3.429
16 O -0.597 6.597
17 N -0.638 5.638
18 C 0.118 3.882
19 C 0.028 3.972
20 C -0.530 4.530
21 H 0.063 0.937
22 C 0.025 3.975
23 N -0.914 5.914
24 Si 0.955 3.045
25 H -0.277 1.277
26 H -0.283 1.283
27 H -0.268 1.268
28 C 0.103 3.897
29 C 0.150 3.850
30 H 0.091 0.909
31 H 0.104 0.896
32 H 0.065 0.935
33 H 0.238 0.762
34 H 0.103 0.897
35 H 0.122 0.878
36 H 0.142 0.858
37 H 0.110 0.890
38 H 0.068 0.932
39 H 0.072 0.928
40 H 0.044 0.956
41 H 0.265 0.735
42 H 0.078 0.922
43 H 0.058 0.942
44 H 0.115 0.885
45 H 0.067 0.933
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 6.548 20.995 5.813 22.748
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.144 4.144
2 C -0.121 4.121
3 C -0.175 4.175
4 N -0.062 5.062
5 O 0.039 5.961
6 C -0.171 4.171
7 C 0.408 3.592
8 O -0.419 6.419
9 N -0.345 5.345
10 C 0.005 3.995
11 C -0.146 4.146
12 H 0.144 0.856
13 C -0.115 4.115
14 C -0.212 4.212
15 C 0.362 3.638
16 O -0.480 6.480
17 N -0.370 5.370
18 C -0.004 4.004
19 C 0.008 3.992
20 C -0.568 4.568
21 H 0.081 0.919
22 C -0.176 4.176
23 N -0.552 5.552
24 Si 0.781 3.219
25 H -0.202 1.202
26 H -0.209 1.209
27 H -0.192 1.192
28 C -0.019 4.019
29 C 0.028 3.972
30 H 0.110 0.890
31 H 0.123 0.877
32 H 0.084 0.916
33 H 0.254 0.746
34 H 0.122 0.878
35 H 0.140 0.860
36 H 0.160 0.840
37 H 0.129 0.871
38 H 0.087 0.913
39 H 0.090 0.910
40 H 0.062 0.938
41 H 0.074 0.926
42 H 0.096 0.904
43 H 0.077 0.923
44 H 0.133 0.867
45 H 0.086 0.914
Dipole moment (debyes) X Y Z Total
from point charges 7.479 21.652 5.416 23.539
hybrid contribution -1.708 -0.928 -0.418 1.988
sum 5.771 20.724 4.998 22.086
Atomic orbital electron populations
1.20410 0.85223 1.04500 1.04238 1.22035 0.99930 0.90243 0.99925
1.25574 0.86433 1.03356 1.02112 1.73737 1.24242 0.91336 1.16860
1.84993 1.27620 1.15615 1.67908 1.23685 0.85629 0.95146 1.12592
1.16285 0.84231 0.81806 0.76856 1.90867 1.17877 1.81000 1.52166
1.49171 1.07994 1.06317 1.71009 1.22270 0.76903 0.99090 1.01258
1.23820 0.99033 0.89273 1.02426 0.85556 1.23305 0.89744 0.95158
1.03306 1.22483 0.93268 1.07261 0.98212 1.19265 0.78387 0.77200
0.88921 1.90616 1.58771 1.66905 1.31711 1.49884 1.34573 1.37324
1.15212 1.23263 0.91850 0.93320 0.91986 1.20149 0.97060 0.91133
0.90813 1.21173 0.98919 1.26188 1.10550 0.91920 1.25695 1.00564
0.96309 0.95018 1.70032 1.36504 1.35195 1.13429 0.85598 0.80212
0.78829 0.77285 1.20247 1.20888 1.19243 1.23255 0.94578 0.89008
0.95072 1.21734 0.97560 0.78232 0.99649 0.89011 0.87691 0.91594
0.74604 0.87842 0.86035 0.83965 0.87133 0.91348 0.91031 0.93776
0.92552 0.90425 0.92339 0.86702 0.91435
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.09 -1.36 9.95 71.23 0.71 -0.65 16
2 C -0.12 -2.19 6.37 -19.45 -0.12 -2.31 16
3 C 0.00 0.04 12.14 85.69 1.04 1.09 16
4 N -0.36 -7.08 12.04 -58.55 -0.71 -7.79 16
5 O 0.11 2.26 8.52 65.84 0.56 2.82 16
6 C -0.11 -2.41 7.11 24.39 0.17 -2.24 16
7 C 0.62 17.28 7.91 86.69 0.69 17.97 16
8 O -0.54 -18.45 15.38 -3.98 -0.06 -18.51 16
9 N -0.61 -15.22 3.32 -812.52 -2.70 -17.91 16
10 C 0.13 2.21 6.50 86.40 0.56 2.77 16
11 C -0.13 -2.65 6.84 -10.03 -0.07 -2.72 16
12 H 0.13 2.86 8.14 -2.39 -0.02 2.84 16
13 C -0.08 -1.51 9.87 30.59 0.30 -1.21 16
14 C -0.21 -5.87 2.70 -52.02 -0.14 -6.01 16
15 C 0.57 22.31 7.68 87.66 0.67 22.99 16
16 O -0.60 -27.00 17.66 -3.05 -0.05 -27.05 16
17 N -0.64 -26.12 3.62 -858.93 -3.11 -29.23 16
18 C 0.12 4.93 6.40 83.09 0.53 5.46 16
19 C 0.03 1.30 3.76 -11.30 -0.04 1.26 16
20 C -0.53 -27.01 8.84 25.60 0.23 -26.78 16
21 H 0.06 3.13 7.81 -2.91 -0.02 3.11 16
22 C 0.02 1.28 5.46 84.65 0.46 1.74 16
23 N -0.91 -49.17 13.26 21.45 0.28 -48.89 16
24 Si 0.96 40.92 29.54 68.60 2.03 42.94 16
25 H -0.28 -11.68 7.11 99.48 0.71 -10.97 16
26 H -0.28 -11.96 7.11 99.48 0.71 -11.26 16
27 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16
28 C 0.10 4.40 8.18 83.17 0.68 5.08 16
29 C 0.15 4.06 6.06 86.53 0.52 4.58 16
30 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16
31 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16
32 H 0.07 1.42 6.73 -2.38 -0.02 1.40 16
33 H 0.24 1.40 8.06 -2.91 -0.02 1.37 16
34 H 0.10 1.72 5.64 -2.39 -0.01 1.70 16
35 H 0.12 1.38 8.14 -2.38 -0.02 1.36 16
36 H 0.14 1.81 8.14 -2.38 -0.02 1.79 16
37 H 0.11 2.25 8.14 -2.39 -0.02 2.23 16
38 H 0.07 2.74 8.14 -2.38 -0.02 2.72 16
39 H 0.07 3.03 8.06 -2.39 -0.02 3.01 16
40 H 0.04 2.28 8.11 -2.39 -0.02 2.26 16
41 H 0.27 13.59 8.31 -92.71 -0.77 12.81 16
42 H 0.08 3.23 8.10 -2.39 -0.02 3.21 16
43 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16
44 H 0.12 2.52 8.14 -2.39 -0.02 2.50 16
45 H 0.07 2.26 6.57 -2.38 -0.02 2.25 16
Total: -1.00 -69.59 381.10 3.47 -66.12
By element:
Atomic # 1 Polarization: 15.47 SS G_CDS: 1.03 Total: 16.49 kcal
Atomic # 6 Polarization: 14.81 SS G_CDS: 6.19 Total: 21.01 kcal
Atomic # 7 Polarization: -97.59 SS G_CDS: -6.22 Total: -103.81 kcal
Atomic # 8 Polarization: -43.19 SS G_CDS: 0.45 Total: -42.74 kcal
Atomic # 14 Polarization: 40.92 SS G_CDS: 2.03 Total: 42.94 kcal
Total: -69.59 3.47 -66.12 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001275519277.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 125.930 kcal
(2) G-P(sol) polarization free energy of solvation -69.585 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.344 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.468 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.117 kcal
(6) G-S(sol) free energy of system = (1) + (5) 59.813 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.06 seconds