Wall clock time and date at job start Wed Apr 1 2020 03:45:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.41264 * 128.07709 * 2 1 4 4 N 1.30132 * 106.58948 * 180.02562 * 3 2 1 5 5 O 1.20885 * 111.98298 * 359.72175 * 4 3 2 6 6 C 1.34643 * 111.46667 * 0.45480 * 5 4 3 7 7 C 1.47514 * 126.94304 * 179.82962 * 6 5 4 8 8 O 1.21583 * 120.00217 * 179.68379 * 7 6 5 9 9 N 1.34772 * 120.00008 * 359.68384 * 7 6 5 10 10 C 1.47728 * 134.39664 * 179.97438 * 9 7 6 11 11 C 1.53294 * 85.85812 * 155.92443 * 10 9 7 12 12 C 1.52327 * 128.81740 * 243.38170 * 11 10 9 13 13 C 1.52317 * 128.81912 * 163.01638 * 11 10 9 14 14 H 1.09002 * 117.51638 * 10.40781 * 13 11 10 15 15 C 1.50699 * 117.51816 * 225.33630 * 13 11 10 16 16 O 1.21280 * 120.00081 * 359.97438 * 15 13 11 17 17 N 1.34781 * 120.00312 * 179.97438 * 15 13 11 18 18 C 1.47580 * 134.49134 * 179.97438 * 17 15 13 19 19 C 1.53952 * 86.11500 * 155.36347 * 18 17 15 20 20 C 1.50695 * 113.74060 * 137.95290 * 19 18 17 21 21 H 1.07995 * 120.00496 * 0.02562 * 20 19 18 22 22 C 1.37880 * 119.99572 * 180.02562 * 20 19 18 23 23 N 1.31511 * 120.00327 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 119.99951 * 180.02562 * 22 20 19 25 25 H 1.48506 * 109.47297 * 59.99744 * 24 22 20 26 26 H 1.48503 * 109.47261 * 299.99924 * 24 22 20 27 27 H 1.48500 * 109.47454 * 179.97438 * 24 22 20 28 28 C 1.47578 * 134.49101 * 0.02562 * 17 15 13 29 29 C 1.47730 * 134.39516 * 0.02611 * 9 7 6 30 30 H 1.09001 * 109.46465 * 270.00144 * 1 2 3 31 31 H 1.08992 * 109.47215 * 29.99820 * 1 2 3 32 32 H 1.08999 * 109.46988 * 150.00519 * 1 2 3 33 33 H 1.07996 * 126.70436 * 0.03215 * 3 2 1 34 34 H 1.09003 * 113.80602 * 41.69107 * 10 9 7 35 35 H 1.08992 * 113.81434 * 270.15832 * 10 9 7 36 36 H 1.09003 * 117.51441 * 134.66395 * 12 11 10 37 37 H 1.08997 * 117.51669 * 349.53940 * 12 11 10 38 38 H 1.08998 * 113.77108 * 41.06531 * 18 17 15 39 39 H 1.08991 * 113.87349 * 269.67144 * 18 17 15 40 40 H 1.08997 * 113.74240 * 269.15892 * 19 18 17 41 41 H 0.97006 * 119.99995 * 359.97438 * 23 22 20 42 42 H 1.08997 * 113.77175 * 90.33932 * 28 17 15 43 43 H 1.09004 * 113.76848 * 318.93948 * 28 17 15 44 44 H 1.09005 * 113.81110 * 89.84176 * 29 9 7 45 45 H 1.09003 * 113.80855 * 318.31190 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3782 1.1120 0.0000 4 7 3.5891 0.6353 -0.0006 5 8 3.5995 -0.5735 0.0045 6 6 2.3508 -1.0770 -0.0006 7 6 1.9695 -2.5021 -0.0004 8 8 0.7953 -2.8172 0.0004 9 7 2.9229 -3.4547 -0.0010 10 6 2.9078 -4.9319 -0.0005 11 6 4.3042 -4.8356 -0.6256 12 6 4.7699 -5.3022 -1.9988 13 6 5.3790 -5.9097 -0.7317 14 1 5.0970 -6.9312 -0.4764 15 6 6.7915 -5.5183 -0.3815 16 8 7.0372 -4.3835 -0.0313 17 7 7.7818 -6.4294 -0.4574 18 6 9.2346 -6.4018 -0.1993 19 6 9.1146 -7.9175 0.0420 20 6 10.2348 -8.7196 -0.5685 21 1 11.0218 -8.2200 -1.1138 22 6 10.2548 -10.0914 -0.4310 23 7 9.2962 -10.6998 0.2325 24 14 11.6437 -11.0856 -1.1872 25 1 12.9388 -10.6479 -0.6070 26 1 11.6623 -10.8721 -2.6567 27 1 11.4346 -12.5273 -0.8986 28 6 7.8490 -7.8550 -0.8328 29 6 4.4001 -3.4386 -0.0014 30 1 -0.3632 0.0000 1.0277 31 1 -0.3633 0.8899 -0.5138 32 1 -0.3633 -0.8900 -0.5138 33 1 2.0947 2.1541 0.0005 34 1 2.1580 -5.3645 -0.6630 35 1 2.9015 -5.3716 0.9967 36 1 5.3910 -4.6195 -2.5788 37 1 4.0872 -5.9243 -2.5776 38 1 9.5122 -5.8360 0.6901 39 1 9.8329 -6.1420 -1.0725 40 1 8.9197 -8.1824 1.0812 41 1 8.5751 -10.1835 0.6256 42 1 8.0393 -8.0217 -1.8931 43 1 7.0199 -8.4499 -0.4495 44 1 4.8404 -3.4314 0.9957 45 1 4.8317 -2.6889 -0.6646 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001275519333.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:45:21 Heat of formation + Delta-G solvation = 95.783501 kcal Electronic energy + Delta-G solvation = -29290.812993 eV Core-core repulsion = 25087.598081 eV Total energy + Delta-G solvation = -4203.214912 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -45.33228 -40.91649 -39.56356 -38.52907 -37.05914 -35.16201 -34.58735 -32.92430 -32.68040 -29.58216 -29.05144 -27.73533 -26.59086 -25.53223 -25.05032 -24.00189 -23.27112 -22.46562 -20.81607 -20.35372 -19.20356 -18.24758 -18.13628 -18.06938 -17.25846 -16.73183 -16.46957 -16.09719 -15.97230 -15.18014 -14.95192 -14.74336 -14.36663 -14.13365 -13.85083 -13.63932 -13.60155 -13.52711 -13.36116 -13.24961 -12.98169 -12.58728 -12.30046 -11.96980 -11.74506 -11.62669 -11.56103 -11.13439 -11.05045 -10.92365 -10.73190 -10.72010 -10.65763 -10.21147 -10.13335 -9.84335 -9.72706 -9.50671 -9.04686 -8.68134 -8.58474 -8.04153 -6.55975 -4.29644 0.45965 1.71957 2.09493 2.62249 2.64534 2.81353 3.23125 3.35535 3.36991 3.55301 3.63218 3.80498 3.91974 4.10749 4.27538 4.32372 4.40500 4.62828 4.65595 4.82745 4.94123 5.00373 5.13283 5.15003 5.23206 5.24103 5.32209 5.36024 5.43874 5.47292 5.55389 5.59407 5.70464 5.76103 5.81008 5.85357 5.97959 6.08961 6.19429 6.34685 6.38492 6.55755 7.18964 7.22788 7.49194 7.78353 7.92979 8.22590 8.30082 8.55255 8.66579 9.43105 10.83364 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.029360 B = 0.001939 C = 0.001855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.444288 B =14437.313112 C =15088.153197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.123 4.123 3 C -0.017 4.017 4 N -0.341 5.341 5 O 0.122 5.878 6 C -0.087 4.087 7 C 0.629 3.371 8 O -0.517 6.517 9 N -0.633 5.633 10 C 0.155 3.845 11 C -0.155 4.155 12 C -0.111 4.111 13 C -0.151 4.151 14 H 0.128 0.872 15 C 0.552 3.448 16 O -0.560 6.560 17 N -0.634 5.634 18 C 0.113 3.887 19 C 0.013 3.987 20 C -0.596 4.596 21 H 0.056 0.944 22 C 0.025 3.975 23 N -0.903 5.903 24 Si 1.069 2.931 25 H -0.286 1.286 26 H -0.286 1.286 27 H -0.282 1.282 28 C 0.097 3.903 29 C 0.158 3.842 30 H 0.080 0.920 31 H 0.074 0.926 32 H 0.089 0.911 33 H 0.199 0.801 34 H 0.091 0.909 35 H 0.099 0.901 36 H 0.105 0.895 37 H 0.111 0.889 38 H 0.062 0.938 39 H 0.076 0.924 40 H 0.055 0.945 41 H 0.270 0.730 42 H 0.080 0.920 43 H 0.060 0.940 44 H 0.104 0.896 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.273 15.708 -2.261 22.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.127 4.127 3 C -0.195 4.195 4 N -0.039 5.039 5 O 0.048 5.952 6 C -0.152 4.152 7 C 0.416 3.584 8 O -0.394 6.394 9 N -0.367 5.367 10 C 0.034 3.966 11 C -0.156 4.156 12 C -0.148 4.148 13 C -0.172 4.172 14 H 0.146 0.854 15 C 0.341 3.659 16 O -0.440 6.440 17 N -0.366 5.366 18 C -0.009 4.009 19 C -0.007 4.007 20 C -0.634 4.634 21 H 0.075 0.925 22 C -0.181 4.181 23 N -0.537 5.537 24 Si 0.896 3.104 25 H -0.213 1.213 26 H -0.213 1.213 27 H -0.207 1.207 28 C -0.026 4.026 29 C 0.037 3.963 30 H 0.099 0.901 31 H 0.093 0.907 32 H 0.108 0.892 33 H 0.216 0.784 34 H 0.110 0.890 35 H 0.117 0.883 36 H 0.124 0.876 37 H 0.129 0.871 38 H 0.081 0.919 39 H 0.095 0.905 40 H 0.073 0.927 41 H 0.080 0.920 42 H 0.098 0.902 43 H 0.079 0.921 44 H 0.122 0.878 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -15.289 15.449 -2.246 21.851 hybrid contribution -1.267 1.549 0.187 2.010 sum -16.556 16.997 -2.059 23.817 Atomic orbital electron populations 1.20325 0.86272 1.04155 1.03467 1.21650 0.99049 0.90226 1.01814 1.25018 0.87723 1.02100 1.04614 1.73807 1.23091 0.91336 1.15706 1.85044 1.28039 1.15376 1.66710 1.23921 0.84782 0.95870 1.10650 1.15961 0.84346 0.80875 0.77204 1.90841 1.16560 1.80415 1.51547 1.49816 1.08321 1.07354 1.71237 1.22708 0.93994 0.78722 1.01168 1.22467 0.94924 0.96172 1.02038 1.22833 1.01330 1.01690 0.88956 1.22134 0.91752 0.99087 1.04273 0.85403 1.19173 0.84966 0.83895 0.77822 1.90638 1.84001 1.19658 1.49718 1.50338 1.08733 1.12710 1.64862 1.23359 0.78542 0.99220 0.99751 1.20658 0.93342 0.90523 0.96138 1.21808 1.09572 0.93852 1.38212 0.92535 1.25884 1.01035 0.95771 0.95392 1.70828 1.11554 1.39433 1.31862 0.83533 0.74726 0.76164 0.75951 1.21283 1.21281 1.20723 1.23886 1.00257 0.77378 1.01063 1.22756 0.77025 0.94531 1.01974 0.90141 0.90685 0.89196 0.78419 0.89049 0.88326 0.87626 0.87071 0.91933 0.90547 0.92738 0.91960 0.90177 0.92131 0.87842 0.88974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.63 9.96 36.01 0.36 -0.27 16 2 C -0.12 -1.20 6.37 -103.98 -0.66 -1.86 16 3 C -0.02 -0.15 12.14 -17.12 -0.21 -0.36 16 4 N -0.34 -4.07 12.04 30.46 0.37 -3.71 16 5 O 0.12 1.51 9.87 15.55 0.15 1.67 16 6 C -0.09 -1.01 7.22 -36.31 -0.26 -1.28 16 7 C 0.63 7.89 8.05 -12.48 -0.10 7.79 16 8 O -0.52 -7.32 15.84 5.29 0.08 -7.24 16 9 N -0.63 -7.31 3.61 -182.93 -0.66 -7.97 16 10 C 0.16 1.52 8.85 -3.22 -0.03 1.49 16 11 C -0.15 -1.72 3.04 -155.01 -0.47 -2.19 16 12 C -0.11 -1.17 10.24 -27.00 -0.28 -1.45 16 13 C -0.15 -1.93 5.94 -92.04 -0.55 -2.48 16 14 H 0.13 1.49 8.14 -51.93 -0.42 1.07 16 15 C 0.55 9.56 7.84 -10.98 -0.09 9.47 16 16 O -0.56 -10.94 15.86 5.56 0.09 -10.85 16 17 N -0.63 -11.82 3.61 -178.40 -0.64 -12.47 16 18 C 0.11 2.24 8.39 -2.97 -0.02 2.22 16 19 C 0.01 0.28 3.10 -90.83 -0.28 0.00 16 20 C -0.60 -14.84 8.77 -34.44 -0.30 -15.15 16 21 H 0.06 1.40 7.81 -52.49 -0.41 0.99 16 22 C 0.02 0.64 5.46 -17.82 -0.10 0.54 16 23 N -0.90 -24.58 13.65 55.43 0.76 -23.82 16 24 Si 1.07 22.91 29.90 -169.99 -5.08 17.82 16 25 H -0.29 -5.93 7.11 56.52 0.40 -5.53 16 26 H -0.29 -5.87 7.11 56.52 0.40 -5.47 16 27 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 28 C 0.10 1.86 8.12 -2.96 -0.02 1.84 16 29 C 0.16 1.90 6.40 -3.21 -0.02 1.88 16 30 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.09 0.80 6.73 -51.93 -0.35 0.45 16 33 H 0.20 1.04 8.06 -52.49 -0.42 0.62 16 34 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.11 1.18 8.14 -51.93 -0.42 0.76 16 37 H 0.11 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 39 H 0.08 1.49 8.09 -51.93 -0.42 1.07 16 40 H 0.05 1.30 7.61 -51.93 -0.40 0.90 16 41 H 0.27 7.21 7.04 -40.82 -0.29 6.92 16 42 H 0.08 1.56 8.09 -51.93 -0.42 1.14 16 43 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 44 H 0.10 1.30 8.01 -51.93 -0.42 0.89 16 45 H 0.09 1.15 7.62 -51.93 -0.40 0.75 16 LS Contribution 387.93 15.07 5.85 5.85 Total: -1.00 -30.64 387.93 -8.24 -38.88 By element: Atomic # 1 Polarization: 7.77 SS G_CDS: -6.12 Total: 1.65 kcal Atomic # 6 Polarization: 3.22 SS G_CDS: -3.03 Total: 0.19 kcal Atomic # 7 Polarization: -47.79 SS G_CDS: -0.18 Total: -47.97 kcal Atomic # 8 Polarization: -16.75 SS G_CDS: 0.33 Total: -16.43 kcal Atomic # 14 Polarization: 22.91 SS G_CDS: -5.08 Total: 17.82 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -30.64 -8.24 -38.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275519333.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.665 kcal (2) G-P(sol) polarization free energy of solvation -30.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.882 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds