Wall clock time and date at job start Wed Apr 1 2020 03:45:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.41264 * 128.07709 * 2 1 4 4 N 1.30132 * 106.58948 * 180.02562 * 3 2 1 5 5 O 1.20885 * 111.98298 * 359.72175 * 4 3 2 6 6 C 1.34643 * 111.46667 * 0.45480 * 5 4 3 7 7 C 1.47514 * 126.94304 * 179.82962 * 6 5 4 8 8 O 1.21583 * 120.00217 * 179.68379 * 7 6 5 9 9 N 1.34772 * 120.00008 * 359.68384 * 7 6 5 10 10 C 1.47728 * 134.39664 * 179.97438 * 9 7 6 11 11 C 1.53294 * 85.85812 * 155.92443 * 10 9 7 12 12 C 1.52327 * 128.81740 * 243.38170 * 11 10 9 13 13 C 1.52317 * 128.81912 * 163.01638 * 11 10 9 14 14 H 1.09002 * 117.51638 * 10.40781 * 13 11 10 15 15 C 1.50699 * 117.51816 * 225.33630 * 13 11 10 16 16 O 1.21280 * 120.00081 * 359.97438 * 15 13 11 17 17 N 1.34781 * 120.00312 * 179.97438 * 15 13 11 18 18 C 1.47580 * 134.49134 * 179.97438 * 17 15 13 19 19 C 1.53952 * 86.11500 * 155.36347 * 18 17 15 20 20 C 1.50695 * 113.74060 * 137.95290 * 19 18 17 21 21 H 1.07995 * 120.00496 * 0.02562 * 20 19 18 22 22 C 1.37880 * 119.99572 * 180.02562 * 20 19 18 23 23 N 1.31511 * 120.00327 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 119.99951 * 180.02562 * 22 20 19 25 25 H 1.48506 * 109.47297 * 59.99744 * 24 22 20 26 26 H 1.48503 * 109.47261 * 299.99924 * 24 22 20 27 27 H 1.48500 * 109.47454 * 179.97438 * 24 22 20 28 28 C 1.47578 * 134.49101 * 0.02562 * 17 15 13 29 29 C 1.47730 * 134.39516 * 0.02611 * 9 7 6 30 30 H 1.09001 * 109.46465 * 270.00144 * 1 2 3 31 31 H 1.08992 * 109.47215 * 29.99820 * 1 2 3 32 32 H 1.08999 * 109.46988 * 150.00519 * 1 2 3 33 33 H 1.07996 * 126.70436 * 0.03215 * 3 2 1 34 34 H 1.09003 * 113.80602 * 41.69107 * 10 9 7 35 35 H 1.08992 * 113.81434 * 270.15832 * 10 9 7 36 36 H 1.09003 * 117.51441 * 134.66395 * 12 11 10 37 37 H 1.08997 * 117.51669 * 349.53940 * 12 11 10 38 38 H 1.08998 * 113.77108 * 41.06531 * 18 17 15 39 39 H 1.08991 * 113.87349 * 269.67144 * 18 17 15 40 40 H 1.08997 * 113.74240 * 269.15892 * 19 18 17 41 41 H 0.97006 * 119.99995 * 359.97438 * 23 22 20 42 42 H 1.08997 * 113.77175 * 90.33932 * 28 17 15 43 43 H 1.09004 * 113.76848 * 318.93948 * 28 17 15 44 44 H 1.09005 * 113.81110 * 89.84176 * 29 9 7 45 45 H 1.09003 * 113.80855 * 318.31190 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3782 1.1120 0.0000 4 7 3.5891 0.6353 -0.0006 5 8 3.5995 -0.5735 0.0045 6 6 2.3508 -1.0770 -0.0006 7 6 1.9695 -2.5021 -0.0004 8 8 0.7953 -2.8172 0.0004 9 7 2.9229 -3.4547 -0.0010 10 6 2.9078 -4.9319 -0.0005 11 6 4.3042 -4.8356 -0.6256 12 6 4.7699 -5.3022 -1.9988 13 6 5.3790 -5.9097 -0.7317 14 1 5.0970 -6.9312 -0.4764 15 6 6.7915 -5.5183 -0.3815 16 8 7.0372 -4.3835 -0.0313 17 7 7.7818 -6.4294 -0.4574 18 6 9.2346 -6.4018 -0.1993 19 6 9.1146 -7.9175 0.0420 20 6 10.2348 -8.7196 -0.5685 21 1 11.0218 -8.2200 -1.1138 22 6 10.2548 -10.0914 -0.4310 23 7 9.2962 -10.6998 0.2325 24 14 11.6437 -11.0856 -1.1872 25 1 12.9388 -10.6479 -0.6070 26 1 11.6623 -10.8721 -2.6567 27 1 11.4346 -12.5273 -0.8986 28 6 7.8490 -7.8550 -0.8328 29 6 4.4001 -3.4386 -0.0014 30 1 -0.3632 0.0000 1.0277 31 1 -0.3633 0.8899 -0.5138 32 1 -0.3633 -0.8900 -0.5138 33 1 2.0947 2.1541 0.0005 34 1 2.1580 -5.3645 -0.6630 35 1 2.9015 -5.3716 0.9967 36 1 5.3910 -4.6195 -2.5788 37 1 4.0872 -5.9243 -2.5776 38 1 9.5122 -5.8360 0.6901 39 1 9.8329 -6.1420 -1.0725 40 1 8.9197 -8.1824 1.0812 41 1 8.5751 -10.1835 0.6256 42 1 8.0393 -8.0217 -1.8931 43 1 7.0199 -8.4499 -0.4495 44 1 4.8404 -3.4314 0.9957 45 1 4.8317 -2.6889 -0.6646 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001275519333.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:45:20 Heat of formation + Delta-G solvation = 77.966628 kcal Electronic energy + Delta-G solvation = -29291.585590 eV Core-core repulsion = 25087.598081 eV Total energy + Delta-G solvation = -4203.987509 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -46.12678 -41.92919 -40.90952 -39.67301 -38.47108 -35.98192 -35.55155 -34.82132 -33.49835 -30.93289 -30.07434 -28.56788 -27.47767 -27.09586 -26.80657 -24.82666 -24.58188 -23.24724 -22.22898 -21.37625 -20.26795 -19.47908 -19.03950 -19.00396 -18.91416 -18.11994 -17.51556 -17.07676 -16.83919 -16.58479 -16.40623 -15.81399 -15.56611 -15.31939 -15.06098 -14.82145 -14.63492 -14.27912 -14.22572 -14.16163 -14.00317 -13.65458 -13.57880 -13.44665 -13.25988 -13.09275 -12.77515 -12.43632 -12.35972 -12.09267 -11.89558 -11.83174 -11.60146 -11.52336 -11.42913 -11.08904 -11.03224 -10.65221 -10.53183 -10.41841 -9.95536 -9.60615 -8.58109 -6.31487 -0.39968 0.98878 1.20976 1.47320 1.63158 1.68126 1.72294 1.78227 1.87603 1.93361 2.62338 2.66308 2.93409 3.10533 3.20152 3.23299 3.34959 3.57228 3.60113 3.78080 3.89402 4.04684 4.12251 4.17023 4.30380 4.33433 4.41401 4.46342 4.49133 4.55134 4.59977 4.62321 4.70603 4.73868 4.74941 4.75268 4.79398 4.80847 4.87053 4.88531 5.04820 5.22533 5.43296 6.03979 6.22368 6.25247 6.58611 6.62133 6.84797 6.94921 7.13400 7.47440 8.82580 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.029360 B = 0.001939 C = 0.001855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.444288 B =14437.313112 C =15088.153197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.117 4.117 3 C 0.000 4.000 4 N -0.369 5.369 5 O 0.098 5.902 6 C -0.111 4.111 7 C 0.628 3.372 8 O -0.537 6.537 9 N -0.633 5.633 10 C 0.160 3.840 11 C -0.149 4.149 12 C -0.094 4.094 13 C -0.161 4.161 14 H 0.145 0.855 15 C 0.548 3.452 16 O -0.586 6.586 17 N -0.636 5.636 18 C 0.116 3.884 19 C -0.002 4.002 20 C -0.603 4.603 21 H 0.054 0.946 22 C -0.020 4.020 23 N -0.930 5.930 24 Si 1.111 2.889 25 H -0.276 1.276 26 H -0.269 1.269 27 H -0.288 1.288 28 C 0.116 3.884 29 C 0.157 3.843 30 H 0.090 0.910 31 H 0.105 0.895 32 H 0.074 0.926 33 H 0.238 0.762 34 H 0.110 0.890 35 H 0.111 0.889 36 H 0.098 0.902 37 H 0.143 0.857 38 H 0.061 0.939 39 H 0.080 0.920 40 H 0.032 0.968 41 H 0.262 0.738 42 H 0.081 0.919 43 H 0.072 0.928 44 H 0.092 0.908 45 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.827 16.447 -3.407 24.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.121 4.121 3 C -0.178 4.178 4 N -0.071 5.071 5 O 0.029 5.971 6 C -0.176 4.176 7 C 0.416 3.584 8 O -0.416 6.416 9 N -0.367 5.367 10 C 0.039 3.961 11 C -0.150 4.150 12 C -0.131 4.131 13 C -0.182 4.182 14 H 0.163 0.837 15 C 0.340 3.660 16 O -0.468 6.468 17 N -0.369 5.369 18 C -0.007 4.007 19 C -0.021 4.021 20 C -0.641 4.641 21 H 0.072 0.928 22 C -0.220 4.220 23 N -0.566 5.566 24 Si 0.934 3.066 25 H -0.202 1.202 26 H -0.194 1.194 27 H -0.214 1.214 28 C -0.007 4.007 29 C 0.036 3.964 30 H 0.108 0.892 31 H 0.123 0.877 32 H 0.092 0.908 33 H 0.254 0.746 34 H 0.128 0.872 35 H 0.129 0.871 36 H 0.117 0.883 37 H 0.161 0.839 38 H 0.079 0.921 39 H 0.098 0.902 40 H 0.050 0.950 41 H 0.072 0.928 42 H 0.100 0.900 43 H 0.090 0.910 44 H 0.110 0.890 45 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -16.843 16.174 -3.397 23.597 hybrid contribution -0.793 1.476 0.594 1.778 sum -17.635 17.651 -2.804 25.108 Atomic orbital electron populations 1.20417 0.84508 1.04842 1.04225 1.22092 1.00171 0.89773 1.00100 1.25660 0.86500 1.03594 1.02039 1.73797 1.24748 0.91318 1.17242 1.85019 1.28445 1.15731 1.67912 1.24021 0.85255 0.96102 1.12217 1.16073 0.84168 0.81327 0.76875 1.90821 1.17133 1.80878 1.52738 1.49850 1.07875 1.08198 1.70743 1.22871 0.93311 0.77717 1.02185 1.22497 0.95071 0.94860 1.02576 1.23001 1.00700 1.01007 0.88381 1.22068 0.89045 1.00352 1.06746 0.83717 1.19930 0.86278 0.83179 0.76657 1.90629 1.84714 1.20754 1.50667 1.50291 1.08426 1.12776 1.65426 1.23207 0.79978 0.97590 0.99878 1.20620 0.94423 0.91765 0.95302 1.22104 1.10138 0.94236 1.37658 0.92792 1.27081 1.02326 0.97273 0.95360 1.70926 1.12390 1.39576 1.33672 0.82974 0.72805 0.74520 0.76318 1.20169 1.19448 1.21397 1.23554 0.98928 0.77840 1.00352 1.22649 0.77371 0.95092 1.01326 0.89192 0.87686 0.90762 0.74592 0.87230 0.87072 0.88325 0.83867 0.92085 0.90156 0.95004 0.92839 0.90042 0.90960 0.88970 0.89943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.06 9.96 71.24 0.71 -0.35 16 2 C -0.12 -2.11 6.37 -19.45 -0.12 -2.24 16 3 C 0.00 0.00 12.14 85.69 1.04 1.04 16 4 N -0.37 -8.63 12.04 -58.54 -0.70 -9.34 16 5 O 0.10 2.48 9.87 65.81 0.65 3.13 16 6 C -0.11 -2.58 7.22 24.39 0.18 -2.40 16 7 C 0.63 15.56 8.05 86.69 0.70 16.25 16 8 O -0.54 -14.89 15.84 -3.98 -0.06 -14.96 16 9 N -0.63 -14.25 3.61 -850.93 -3.07 -17.32 16 10 C 0.16 2.81 8.85 86.24 0.76 3.58 16 11 C -0.15 -3.09 3.04 -52.39 -0.16 -3.25 16 12 C -0.09 -1.77 10.24 30.42 0.31 -1.46 16 13 C -0.16 -3.85 5.94 -11.72 -0.07 -3.92 16 14 H 0.15 3.01 8.14 -2.39 -0.02 2.99 16 15 C 0.55 18.71 7.84 87.66 0.69 19.40 16 16 O -0.59 -23.07 15.86 -3.03 -0.05 -23.11 16 17 N -0.64 -23.55 3.61 -836.73 -3.02 -26.57 16 18 C 0.12 4.64 8.39 86.48 0.73 5.36 16 19 C 0.00 -0.08 3.10 -10.87 -0.03 -0.12 16 20 C -0.60 -30.15 8.77 25.60 0.22 -29.93 16 21 H 0.05 2.67 7.81 -2.91 -0.02 2.64 16 22 C -0.02 -1.05 5.46 84.66 0.46 -0.59 16 23 N -0.93 -51.08 13.65 21.45 0.29 -50.79 16 24 Si 1.11 45.71 29.90 68.60 2.05 47.76 16 25 H -0.28 -10.79 7.11 99.48 0.71 -10.08 16 26 H -0.27 -10.25 7.11 99.48 0.71 -9.54 16 27 H -0.29 -12.09 7.11 99.48 0.71 -11.38 16 28 C 0.12 4.40 8.12 86.49 0.70 5.10 16 29 C 0.16 3.78 6.40 86.25 0.55 4.33 16 30 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.10 0.69 8.14 -2.39 -0.02 0.68 16 32 H 0.07 1.23 6.73 -2.39 -0.02 1.21 16 33 H 0.24 1.65 8.06 -2.91 -0.02 1.63 16 34 H 0.11 1.58 8.14 -2.39 -0.02 1.56 16 35 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16 36 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 37 H 0.14 1.83 8.14 -2.39 -0.02 1.81 16 38 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 39 H 0.08 3.13 8.09 -2.39 -0.02 3.11 16 40 H 0.03 1.57 7.61 -2.39 -0.02 1.55 16 41 H 0.26 14.26 7.04 -92.70 -0.65 13.61 16 42 H 0.08 3.08 8.09 -2.39 -0.02 3.07 16 43 H 0.07 2.57 8.14 -2.38 -0.02 2.55 16 44 H 0.09 2.41 8.01 -2.38 -0.02 2.39 16 45 H 0.08 2.13 7.62 -2.39 -0.02 2.11 16 Total: -1.00 -67.26 387.93 3.89 -63.37 By element: Atomic # 1 Polarization: 15.85 SS G_CDS: 1.14 Total: 16.99 kcal Atomic # 6 Polarization: 4.17 SS G_CDS: 6.67 Total: 10.83 kcal Atomic # 7 Polarization: -97.51 SS G_CDS: -6.50 Total: -104.01 kcal Atomic # 8 Polarization: -35.48 SS G_CDS: 0.54 Total: -34.94 kcal Atomic # 14 Polarization: 45.71 SS G_CDS: 2.05 Total: 47.76 kcal Total: -67.26 3.89 -63.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275519333.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.337 kcal (2) G-P(sol) polarization free energy of solvation -67.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.371 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds