Wall clock time and date at job start Wed Apr 1 2020 03:39:32
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50695 * 1
3 3 C 1.35246 * 126.39080 * 2 1
4 4 N 1.33453 * 107.83388 * 179.74243 * 3 2 1
5 5 C 1.31293 * 108.70861 * 0.42936 * 4 3 2
6 6 C 1.47454 * 125.70527 * 179.83827 * 5 4 3
7 7 O 1.21598 * 119.99620 * 179.69418 * 6 5 4
8 8 N 1.34775 * 120.00204 * 359.68427 * 6 5 4
9 9 C 1.49864 * 127.93521 * 3.88230 * 8 6 5
10 10 C 1.54940 * 103.40307 * 219.92954 * 9 8 6
11 11 C 1.54573 * 102.86126 * 322.44591 * 10 9 8
12 12 H 1.08996 * 118.12495 * 242.39064 * 11 10 9
13 13 C 1.52938 * 118.20073 * 85.42326 * 11 10 9
14 14 C 1.47532 * 127.04452 * 184.69530 * 8 6 5
15 15 C 1.50703 * 117.37036 * 295.06650 * 14 8 6
16 16 O 1.21287 * 120.00011 * 172.87911 * 15 14 8
17 17 N 1.34773 * 119.99982 * 352.88320 * 15 14 8
18 18 C 1.47585 * 134.49544 * 174.70550 * 17 15 14
19 19 C 1.53944 * 86.11691 * 155.35822 * 18 17 15
20 20 C 1.50699 * 113.73948 * 137.95885 * 19 18 17
21 21 H 1.08005 * 119.99895 * 1.91960 * 20 19 18
22 22 C 1.37877 * 120.00026 * 181.64944 * 20 19 18
23 23 N 1.31514 * 120.00047 * 0.27169 * 22 20 19
24 24 Si 1.86804 * 120.00190 * 180.27250 * 22 20 19
25 25 H 1.48503 * 109.46981 * 59.99663 * 24 22 20
26 26 H 1.48492 * 109.47128 * 179.97438 * 24 22 20
27 27 H 1.48506 * 109.46809 * 299.99974 * 24 22 20
28 28 C 1.47811 * 134.45950 * 354.57182 * 17 15 14
29 29 O 1.34310 * 126.39576 * 180.02562 * 2 1 3
30 30 H 1.08996 * 109.47077 * 179.97438 * 1 2 3
31 31 H 1.08999 * 109.47392 * 299.97304 * 1 2 3
32 32 H 1.08998 * 109.47178 * 59.96983 * 1 2 3
33 33 H 1.08000 * 126.08086 * 0.02562 * 3 2 1
34 34 H 1.09005 * 110.70116 * 101.38772 * 9 8 6
35 35 H 1.09007 * 110.62919 * 338.44034 * 9 8 6
36 36 H 1.08997 * 110.73606 * 204.10182 * 10 9 8
37 37 H 1.09002 * 110.88911 * 80.86292 * 10 9 8
38 38 H 1.09001 * 117.45786 * 160.76688 * 13 11 10
39 39 H 1.09003 * 117.42521 * 16.00985 * 13 11 10
40 40 H 1.09007 * 113.76631 * 41.05353 * 18 17 15
41 41 H 1.09000 * 113.87164 * 269.67564 * 18 17 15
42 42 H 1.09001 * 113.74075 * 269.15117 * 19 18 17
43 43 H 0.97000 * 120.00290 * 179.97438 * 23 22 20
44 44 H 1.09007 * 113.76881 * 90.37833 * 28 17 15
45 45 H 1.09005 * 113.83693 * 318.92296 * 28 17 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.3094 1.0887 0.0000
4 7 3.5745 0.6640 0.0057
5 6 3.5780 -0.6489 -0.0001
6 6 4.7777 -1.5063 -0.0001
7 8 4.6599 -2.7165 -0.0002
8 7 6.0046 -0.9485 -0.0001
9 6 6.3553 0.5063 0.0798
10 6 7.5354 0.6464 -0.9143
11 6 8.3196 -0.6691 -0.7051
12 1 9.3431 -0.6040 -0.3360
13 6 7.8790 -1.9057 -1.4897
14 6 7.2994 -1.6491 -0.0965
15 6 7.6774 -2.5656 1.0385
16 8 8.6659 -3.2629 0.9514
17 7 6.9170 -2.6104 2.1503
18 6 6.9250 -3.4317 3.3765
19 6 6.2000 -2.2506 4.0468
20 6 5.0726 -2.6677 4.9556
21 1 4.8619 -3.7158 5.1087
22 6 4.3136 -1.7112 5.5961
23 7 4.5701 -0.4349 5.4097
24 14 2.9209 -2.2283 6.7286
25 1 3.4644 -3.0556 7.8357
26 1 2.2650 -1.0202 7.2901
27 1 1.9267 -3.0203 5.9608
28 6 5.7414 -1.8547 2.6317
29 8 2.3039 -1.0811 -0.0005
30 1 -0.3633 -1.0276 -0.0005
31 1 -0.3634 0.5134 0.8902
32 1 -0.3633 0.5143 -0.8897
33 1 1.9841 2.1186 0.0004
34 1 6.6692 0.7721 1.0893
35 1 5.5126 1.1223 -0.2342
36 1 8.1529 1.5082 -0.6613
37 1 7.1731 0.7208 -1.9397
38 1 8.5984 -2.7181 -1.5930
39 1 7.2207 -1.7498 -2.3444
40 1 7.9228 -3.6177 3.7742
41 1 6.3201 -4.3357 3.3060
42 1 6.8727 -1.5277 4.5085
43 1 4.0359 0.2380 5.8600
44 1 4.7873 -2.2938 2.3401
45 1 5.7958 -0.7838 2.4358
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001275637703.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:39:32
Heat of formation + Delta-G solvation = 28.567606 kcal
Electronic energy + Delta-G solvation = -31912.225775 eV
Core-core repulsion = 27706.096164 eV
Total energy + Delta-G solvation = -4206.129612 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 345.152 amu
Computer time = 1.04 seconds
Orbital eigenvalues (eV)
-44.62138 -42.21806 -40.36646 -39.65333 -38.37489 -36.26227 -34.73508 -34.33613
-33.33247 -31.82706 -30.85326 -28.81208 -27.40148 -27.04540 -25.61973 -24.45331
-24.21321 -23.19356 -22.39272 -21.60535 -21.37838 -19.81376 -19.00102 -18.62623
-18.28680 -18.09684 -17.47662 -17.13600 -16.68292 -16.55493 -16.18066 -15.80806
-15.61764 -15.36438 -15.03708 -14.87084 -14.52050 -14.24948 -14.14261 -13.91967
-13.87022 -13.75884 -13.39150 -13.34519 -13.18292 -12.98985 -12.87607 -12.69895
-12.66765 -12.34825 -12.31775 -12.06354 -11.81652 -11.63531 -11.37169 -11.26490
-11.25319 -10.80939 -10.63448 -10.05570 -9.75894 -9.65386 -8.23100 -6.34603
-0.33742 0.70953 1.11236 1.24328 1.39889 1.41255 1.48967 1.81185
1.92823 2.06021 2.38827 2.48911 2.74876 3.06041 3.21518 3.34204
3.55780 3.62902 3.80133 3.86710 4.11101 4.14905 4.16947 4.27863
4.30345 4.32693 4.39628 4.44220 4.51943 4.59722 4.66961 4.67731
4.68561 4.74077 4.80860 4.93068 4.96489 4.98591 5.02467 5.11100
5.21816 5.29774 5.47134 5.71775 6.01244 6.13247 6.25322 6.67231
6.69941 6.74056 7.03385 7.34139 8.86472
Molecular weight = 345.15amu
Principal moments of inertia in cm(-1)
A = 0.007662 B = 0.006033 C = 0.003864
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3653.735052 B = 4640.167768 C = 7244.139555
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.072 4.072
2 C -0.016 4.016
3 C -0.048 4.048
4 N -0.421 5.421
5 C 0.106 3.894
6 C 0.631 3.369
7 O -0.553 6.553
8 N -0.562 5.562
9 C 0.084 3.916
10 C -0.091 4.091
11 C -0.089 4.089
12 H 0.144 0.856
13 C -0.102 4.102
14 C 0.009 3.991
15 C 0.560 3.440
16 O -0.587 6.587
17 N -0.630 5.630
18 C 0.108 3.892
19 C 0.029 3.971
20 C -0.539 4.539
21 H 0.059 0.941
22 C 0.024 3.976
23 N -0.911 5.911
24 Si 0.955 3.045
25 H -0.267 1.267
26 H -0.277 1.277
27 H -0.275 1.275
28 C 0.140 3.860
29 O -0.191 6.191
30 H 0.078 0.922
31 H 0.115 0.885
32 H 0.129 0.871
33 H 0.235 0.765
34 H 0.069 0.931
35 H 0.130 0.870
36 H 0.128 0.872
37 H 0.103 0.897
38 H 0.117 0.883
39 H 0.121 0.879
40 H 0.073 0.927
41 H 0.071 0.929
42 H 0.043 0.957
43 H 0.266 0.734
44 H 0.045 0.955
45 H 0.057 0.943
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.355 10.704 -15.668 19.469
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.128 4.128
2 C -0.071 4.071
3 C -0.191 4.191
4 N -0.156 5.156
5 C -0.097 4.097
6 C 0.418 3.582
7 O -0.430 6.430
8 N -0.296 5.296
9 C -0.035 4.035
10 C -0.128 4.128
11 C -0.108 4.108
12 H 0.162 0.838
13 C -0.140 4.140
14 C -0.080 4.080
15 C 0.350 3.650
16 O -0.469 6.469
17 N -0.362 5.362
18 C -0.014 4.014
19 C 0.010 3.990
20 C -0.577 4.577
21 H 0.077 0.923
22 C -0.177 4.177
23 N -0.548 5.548
24 Si 0.780 3.220
25 H -0.192 1.192
26 H -0.202 1.202
27 H -0.201 1.201
28 C 0.017 3.983
29 O -0.074 6.074
30 H 0.097 0.903
31 H 0.133 0.867
32 H 0.147 0.853
33 H 0.252 0.748
34 H 0.087 0.913
35 H 0.147 0.853
36 H 0.146 0.854
37 H 0.121 0.879
38 H 0.135 0.865
39 H 0.139 0.861
40 H 0.091 0.909
41 H 0.090 0.910
42 H 0.061 0.939
43 H 0.075 0.925
44 H 0.063 0.937
45 H 0.075 0.925
Dipole moment (debyes) X Y Z Total
from point charges -3.403 10.083 -15.776 19.030
hybrid contribution -1.426 -1.177 1.091 2.147
sum -4.829 8.906 -14.685 17.841
Atomic orbital electron populations
1.20723 0.79753 1.05587 1.06771 1.25173 0.97339 0.83648 1.00928
1.23967 0.86182 1.02417 1.06551 1.70229 1.25033 1.07044 1.13269
1.24708 0.84169 0.89758 1.11070 1.15676 0.80496 0.84970 0.77043
1.90871 1.85769 1.14782 1.51598 1.48098 1.01138 1.10016 1.70312
1.23786 1.00809 0.78092 1.00828 1.22525 0.94397 0.95504 1.00376
1.24125 0.97655 0.90290 0.98716 0.83798 1.23565 1.00863 0.99183
0.90433 1.21700 0.85343 1.04624 0.96307 1.19553 0.82184 0.82154
0.81107 1.90602 1.28680 1.46488 1.81133 1.50267 1.30570 1.37778
1.17560 1.23372 1.00170 0.96380 0.81473 1.20408 0.94861 0.92440
0.91323 1.21191 1.15381 0.93271 1.27810 0.92262 1.25734 0.99606
0.94861 0.97455 1.70040 1.40737 1.00472 1.43591 0.85653 0.79195
0.77944 0.79189 1.19201 1.20183 1.20066 1.23242 0.86338 0.94280
0.94438 1.84452 1.17066 1.38019 1.67874 0.90288 0.86675 0.85320
0.74832 0.91273 0.85276 0.85400 0.87871 0.86479 0.86062 0.90860
0.91038 0.93880 0.92497 0.93685 0.92510
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.07 -0.89 10.44 71.23 0.74 -0.15 16
2 C -0.02 -0.38 7.40 24.99 0.18 -0.19 16
3 C -0.05 -1.06 11.80 83.76 0.99 -0.08 16
4 N -0.42 -12.48 8.24 -305.19 -2.52 -15.00 16
5 C 0.11 3.83 7.99 87.20 0.70 4.53 16
6 C 0.63 25.54 5.33 86.67 0.46 26.00 16
7 O -0.55 -26.70 16.46 1.20 0.02 -26.68 16
8 N -0.56 -19.30 1.81 -765.95 -1.38 -20.69 16
9 C 0.08 2.18 6.52 86.39 0.56 2.75 16
10 C -0.09 -1.53 6.86 31.79 0.22 -1.31 16
11 C -0.09 -2.02 6.92 -9.94 -0.07 -2.09 16
12 H 0.14 2.98 8.14 -2.39 -0.02 2.96 16
13 C -0.10 -2.64 9.82 30.59 0.30 -2.34 16
14 C 0.01 0.32 2.47 3.02 0.01 0.32 16
15 C 0.56 24.90 7.89 87.66 0.69 25.59 16
16 O -0.59 -28.02 17.33 -3.05 -0.05 -28.08 16
17 N -0.63 -30.09 3.61 -836.11 -3.02 -33.11 16
18 C 0.11 5.19 8.40 86.48 0.73 5.91 16
19 C 0.03 1.52 3.60 -10.88 -0.04 1.48 16
20 C -0.54 -29.92 8.77 25.60 0.22 -29.70 16
21 H 0.06 3.25 7.81 -2.91 -0.02 3.22 16
22 C 0.02 1.33 5.46 84.65 0.46 1.79 16
23 N -0.91 -51.28 13.29 21.45 0.28 -51.00 16
24 Si 0.96 42.85 29.54 68.60 2.03 44.87 16
25 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16
26 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16
27 H -0.28 -12.25 7.11 99.48 0.71 -11.55 16
28 C 0.14 6.99 5.45 86.44 0.47 7.47 16
29 O -0.19 -6.66 10.79 0.33 0.00 -6.66 16
30 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16
31 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16
32 H 0.13 0.73 8.14 -2.39 -0.02 0.71 16
33 H 0.24 2.88 8.06 -2.91 -0.02 2.85 16
34 H 0.07 1.99 7.65 -2.38 -0.02 1.98 16
35 H 0.13 3.17 5.40 -2.38 -0.01 3.15 16
36 H 0.13 1.40 8.14 -2.39 -0.02 1.38 16
37 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16
38 H 0.12 3.10 7.91 -2.39 -0.02 3.08 16
39 H 0.12 2.68 8.14 -2.39 -0.02 2.66 16
40 H 0.07 3.30 8.14 -2.38 -0.02 3.28 16
41 H 0.07 3.44 8.09 -2.39 -0.02 3.42 16
42 H 0.04 2.41 8.14 -2.39 -0.02 2.39 16
43 H 0.27 14.14 8.31 -92.71 -0.77 13.37 16
44 H 0.04 2.49 6.56 -2.38 -0.02 2.48 16
45 H 0.06 2.82 6.64 -2.38 -0.02 2.80 16
Total: -1.00 -79.86 377.18 3.02 -76.84
By element:
Atomic # 1 Polarization: 18.48 SS G_CDS: 1.03 Total: 19.51 kcal
Atomic # 6 Polarization: 33.35 SS G_CDS: 6.63 Total: 39.98 kcal
Atomic # 7 Polarization: -113.16 SS G_CDS: -6.63 Total: -119.79 kcal
Atomic # 8 Polarization: -61.39 SS G_CDS: -0.03 Total: -61.42 kcal
Atomic # 14 Polarization: 42.85 SS G_CDS: 2.03 Total: 44.87 kcal
Total: -79.86 3.02 -76.84 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001275637703.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 105.408 kcal
(2) G-P(sol) polarization free energy of solvation -79.864 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.544 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.023 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.840 kcal
(6) G-S(sol) free energy of system = (1) + (5) 28.568 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.05 seconds