Wall clock time and date at job start Wed Apr 1 2020 03:48:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35311 * 128.03907 * 2 1 4 4 O 1.34016 * 106.66749 * 179.72252 * 3 2 1 5 5 N 1.20904 * 111.84783 * 0.24353 * 4 3 2 6 6 C 1.30986 * 111.43779 * 359.97438 * 5 4 3 7 7 C 1.48333 * 126.94138 * 179.97438 * 6 5 4 8 8 O 1.21488 * 120.00629 * 180.02562 * 7 6 5 9 9 N 1.34782 * 119.99494 * 0.02562 * 7 6 5 10 10 C 1.46506 * 119.99795 * 180.02562 * 9 7 6 11 11 C 1.54895 * 129.08607 * 299.93836 * 10 9 7 12 12 C 1.57170 * 77.91186 * 180.16554 * 11 10 9 13 13 C 1.50704 * 129.24514 * 179.19670 * 12 11 10 14 14 O 1.21281 * 119.99754 * 241.28212 * 13 12 11 15 15 N 1.34774 * 120.00359 * 61.28493 * 13 12 11 16 16 C 1.47070 * 136.05605 * 359.62769 * 15 13 12 17 17 C 1.53749 * 87.88801 * 152.96212 * 16 15 13 18 18 C 1.50697 * 114.08570 * 139.78139 * 17 16 15 19 19 H 1.08007 * 120.00141 * 266.56145 * 18 17 16 20 20 C 1.37880 * 120.00472 * 86.56032 * 18 17 16 21 21 N 1.31510 * 120.00210 * 179.97438 * 20 18 17 22 22 Si 1.86797 * 119.99763 * 0.02562 * 20 18 17 23 23 H 1.48505 * 109.47164 * 89.99812 * 22 20 18 24 24 H 1.48497 * 109.46959 * 210.00016 * 22 20 18 25 25 H 1.48504 * 109.46828 * 330.00086 * 22 20 18 26 26 C 1.47060 * 136.06131 * 179.97438 * 15 13 12 27 27 C 1.54414 * 129.01199 * 180.02562 * 10 9 7 28 28 C 1.54885 * 129.09169 * 60.05635 * 10 9 7 29 29 H 1.08999 * 109.47518 * 90.02035 * 1 2 3 30 30 H 1.09003 * 109.47340 * 210.01988 * 1 2 3 31 31 H 1.09005 * 109.47010 * 330.01877 * 1 2 3 32 32 H 1.08002 * 126.67004 * 359.97438 * 3 2 1 33 33 H 0.96992 * 120.00339 * 359.97438 * 9 7 6 34 34 H 1.09005 * 114.97423 * 291.95934 * 11 10 9 35 35 H 1.08996 * 114.97656 * 67.13386 * 11 10 9 36 36 H 1.08997 * 113.46741 * 267.69698 * 16 15 13 37 37 H 1.08996 * 113.46724 * 38.13155 * 16 15 13 38 38 H 1.08996 * 114.39556 * 272.67519 * 17 16 15 39 39 H 0.97003 * 120.00093 * 180.02562 * 21 20 18 40 40 H 1.09012 * 113.46528 * 321.86325 * 26 15 13 41 41 H 1.08994 * 113.46941 * 92.30123 * 26 15 13 42 42 H 1.08996 * 114.93156 * 293.12884 * 27 10 9 43 43 H 1.08998 * 114.93064 * 68.09916 * 27 10 9 44 44 H 1.09001 * 114.98020 * 292.87364 * 28 10 9 45 45 H 1.09005 * 114.97043 * 68.04622 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3408 1.0657 0.0000 4 8 3.5888 0.5773 0.0062 5 7 3.5988 -0.6317 0.0051 6 6 2.3836 -1.1205 -0.0014 7 6 1.9991 -2.5531 -0.0052 8 8 0.8255 -2.8671 -0.0116 9 7 2.9518 -3.5066 -0.0014 10 6 2.5720 -4.9215 -0.0058 11 6 1.7336 -5.7109 1.0303 12 6 2.0779 -6.8203 -0.0285 13 6 1.7092 -8.2815 -0.0325 14 8 2.5791 -9.1264 -0.0140 15 7 0.4129 -8.6494 -0.0569 16 6 -0.8843 -7.9566 -0.0768 17 6 -1.4665 -9.1876 -0.7907 18 6 -2.8453 -9.5753 -0.3222 19 1 -2.9630 -10.3119 0.4589 20 6 -3.9567 -8.9898 -0.8906 21 7 -5.1600 -9.3285 -0.4820 22 14 -3.7532 -7.7163 -2.2420 23 1 -3.7416 -8.3942 -3.5633 24 1 -4.8829 -6.7539 -2.1893 25 1 -2.4734 -6.9886 -2.0477 26 6 -0.3272 -9.9201 -0.0690 27 6 3.4788 -6.1713 -0.0022 28 6 1.7450 -5.7076 -1.0532 29 1 -0.3634 -0.0004 -1.0276 30 1 -0.3634 -0.8898 0.5141 31 1 -0.3633 0.8902 0.5136 32 1 2.0560 2.1075 -0.0004 33 1 3.8887 -3.2559 0.0034 34 1 2.2099 -5.8451 2.0015 35 1 0.6845 -5.4214 1.0899 36 1 -1.3036 -7.7918 0.9157 37 1 -0.8859 -7.0559 -0.6905 38 1 -1.3677 -9.1672 -1.8760 39 1 -5.9418 -8.9168 -0.8822 40 1 0.1457 -10.6921 -0.6762 41 1 -0.5996 -10.2734 0.9255 42 1 4.0683 -6.3139 -0.9079 43 1 4.0416 -6.3280 0.9180 44 1 0.6966 -5.4179 -1.1236 45 1 2.2320 -5.8389 -2.0196 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001275808900.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:48:28 Heat of formation + Delta-G solvation = 135.821857 kcal Electronic energy + Delta-G solvation = -29750.380322 eV Core-core repulsion = 25548.901604 eV Total energy + Delta-G solvation = -4201.478718 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -45.55833 -42.25702 -39.62149 -39.14638 -37.06920 -35.11529 -34.36505 -32.65617 -32.56224 -29.82111 -28.62344 -26.50118 -25.96536 -25.89253 -25.48565 -25.08334 -23.58543 -22.12597 -21.41961 -20.10094 -19.20017 -18.72944 -18.24159 -18.00661 -17.23829 -16.95672 -16.82085 -15.90835 -15.23484 -15.11229 -14.95772 -14.64236 -14.50001 -14.27326 -14.04272 -13.77240 -13.66765 -13.58776 -13.41283 -12.83015 -12.79233 -12.24318 -12.07614 -11.85359 -11.82849 -11.72145 -11.53803 -11.32067 -10.85831 -10.79353 -10.75869 -10.67140 -10.56349 -10.30060 -10.08197 -9.90440 -9.86571 -9.41307 -9.40775 -9.18987 -8.66249 -8.09259 -6.21228 -4.24067 0.66094 1.21014 2.26783 2.65360 2.71293 2.76147 3.22392 3.26139 3.31878 3.34297 3.46240 3.92393 4.07714 4.18092 4.26294 4.30365 4.31428 4.41654 4.48201 4.61893 4.79105 4.95275 5.03349 5.20018 5.28380 5.41074 5.42580 5.46488 5.51577 5.62590 5.74957 5.75124 5.80860 5.88028 5.88862 5.93978 6.08822 6.23057 6.25068 6.35789 6.42077 6.52987 6.95005 7.13056 7.50175 7.54036 7.70704 8.26166 8.36225 8.57868 8.82260 9.39891 10.90660 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.011662 B = 0.002894 C = 0.002396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2400.377670 B = 9672.274281 C =11681.695277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.147 4.147 3 C -0.066 4.066 4 O 0.125 5.875 5 N -0.332 5.332 6 C -0.027 4.027 7 C 0.602 3.398 8 O -0.500 6.500 9 N -0.663 5.663 10 C 0.091 3.909 11 C -0.098 4.098 12 C -0.142 4.142 13 C 0.599 3.401 14 O -0.552 6.552 15 N -0.636 5.636 16 C 0.085 3.915 17 C -0.006 4.006 18 C -0.513 4.513 19 H 0.080 0.920 20 C 0.078 3.922 21 N -0.891 5.891 22 Si 0.874 3.126 23 H -0.276 1.276 24 H -0.286 1.286 25 H -0.259 1.259 26 C 0.116 3.884 27 C -0.080 4.080 28 C -0.099 4.099 29 H 0.079 0.921 30 H 0.089 0.911 31 H 0.073 0.927 32 H 0.225 0.775 33 H 0.412 0.588 34 H 0.080 0.920 35 H 0.091 0.909 36 H 0.086 0.914 37 H 0.060 0.940 38 H 0.061 0.939 39 H 0.267 0.733 40 H 0.063 0.937 41 H 0.083 0.917 42 H 0.084 0.916 43 H 0.085 0.915 44 H 0.091 0.909 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.720 22.146 0.876 27.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.152 4.152 3 C -0.146 4.146 4 O 0.049 5.951 5 N -0.032 5.032 6 C -0.186 4.186 7 C 0.386 3.614 8 O -0.371 6.371 9 N -0.313 5.313 10 C 0.003 3.997 11 C -0.137 4.137 12 C -0.146 4.146 13 C 0.387 3.613 14 O -0.432 6.432 15 N -0.368 5.368 16 C -0.037 4.037 17 C -0.026 4.026 18 C -0.551 4.551 19 H 0.098 0.902 20 C -0.126 4.126 21 N -0.528 5.528 22 Si 0.700 3.300 23 H -0.201 1.201 24 H -0.212 1.212 25 H -0.184 1.184 26 C -0.006 4.006 27 C -0.118 4.118 28 C -0.138 4.138 29 H 0.097 0.903 30 H 0.108 0.892 31 H 0.092 0.908 32 H 0.242 0.758 33 H 0.249 0.751 34 H 0.098 0.902 35 H 0.110 0.890 36 H 0.104 0.896 37 H 0.078 0.922 38 H 0.079 0.921 39 H 0.077 0.923 40 H 0.082 0.918 41 H 0.101 0.899 42 H 0.103 0.897 43 H 0.104 0.896 44 H 0.110 0.890 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 16.525 20.959 0.873 26.704 hybrid contribution -0.327 1.286 -0.655 1.480 sum 16.198 22.245 0.218 27.518 Atomic orbital electron populations 1.20272 0.86251 1.04180 1.03537 1.21413 0.99318 0.89913 1.04508 1.25824 0.82148 1.01426 1.05252 1.84765 1.29602 1.15076 1.65638 1.74160 1.21540 0.91850 1.15664 1.23370 0.89754 0.96763 1.08755 1.16836 0.85554 0.82104 0.76912 1.90841 1.17144 1.81256 1.47898 1.44408 1.09713 1.02919 1.74225 1.22879 0.98287 0.79679 0.98857 1.24845 1.01349 0.91252 0.96282 1.23604 0.98651 0.91868 1.00478 1.17731 0.80902 0.86235 0.76442 1.90668 1.48098 1.52051 1.52368 1.49825 1.03668 1.13222 1.70117 1.24035 0.78925 0.99102 1.01661 1.20799 0.94534 0.91456 0.95778 1.20751 0.87058 1.25158 1.22086 0.90162 1.24997 0.95043 0.96203 0.96334 1.69888 0.97895 1.42704 1.42305 0.86917 0.78521 0.81883 0.82648 1.20144 1.21196 1.18376 1.23153 0.89581 0.86823 1.01019 1.23971 0.94808 0.89800 1.03217 1.24388 1.01472 0.91380 0.96528 0.90282 0.89223 0.90799 0.75831 0.75111 0.90180 0.89022 0.89600 0.92176 0.92100 0.92338 0.91827 0.89934 0.89732 0.89642 0.89029 0.90329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.64 10.00 36.01 0.36 -0.28 16 2 C -0.15 -1.22 6.34 -104.12 -0.66 -1.88 16 3 C -0.07 -0.35 12.24 29.69 0.36 0.01 16 4 O 0.13 0.94 11.18 17.24 0.19 1.13 16 5 N -0.33 -3.19 11.84 33.29 0.39 -2.79 16 6 C -0.03 -0.29 7.19 -82.53 -0.59 -0.88 16 7 C 0.60 7.48 7.85 -12.10 -0.09 7.38 16 8 O -0.50 -7.55 15.22 5.38 0.08 -7.47 16 9 N -0.66 -7.26 5.71 -64.79 -0.37 -7.63 16 10 C 0.09 1.12 3.79 -148.43 -0.56 0.55 16 11 C -0.10 -1.34 7.88 -24.72 -0.19 -1.53 16 12 C -0.14 -2.15 3.33 -171.00 -0.57 -2.72 16 13 C 0.60 11.35 8.19 -10.98 -0.09 11.26 16 14 O -0.55 -11.94 17.87 5.56 0.10 -11.84 16 15 N -0.64 -12.36 3.69 -185.11 -0.68 -13.04 16 16 C 0.09 1.69 7.43 -8.38 -0.06 1.62 16 17 C -0.01 -0.13 2.97 -91.14 -0.27 -0.40 16 18 C -0.51 -13.23 9.37 -34.44 -0.32 -13.55 16 19 H 0.08 2.24 8.06 -52.48 -0.42 1.81 16 20 C 0.08 2.09 5.47 -17.82 -0.10 1.99 16 21 N -0.89 -25.72 13.96 55.43 0.77 -24.94 16 22 Si 0.87 20.14 27.15 -169.99 -4.61 15.52 16 23 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 24 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 25 H -0.26 -5.63 5.73 56.52 0.32 -5.30 16 26 C 0.12 2.30 8.17 -8.53 -0.07 2.23 16 27 C -0.08 -0.96 7.78 -26.70 -0.21 -1.17 16 28 C -0.10 -1.38 7.77 -25.97 -0.20 -1.58 16 29 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.09 0.88 6.90 -51.93 -0.36 0.52 16 31 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 32 H 0.23 0.14 8.06 -52.49 -0.42 -0.29 16 33 H 0.41 3.62 8.59 -40.82 -0.35 3.27 16 34 H 0.08 0.99 7.91 -51.93 -0.41 0.58 16 35 H 0.09 1.36 7.97 -51.93 -0.41 0.95 16 36 H 0.09 1.69 8.10 -51.93 -0.42 1.27 16 37 H 0.06 1.16 6.84 -51.93 -0.36 0.80 16 38 H 0.06 1.33 7.03 -51.93 -0.37 0.97 16 39 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 40 H 0.06 1.22 8.14 -51.92 -0.42 0.79 16 41 H 0.08 1.60 8.10 -51.93 -0.42 1.18 16 42 H 0.08 0.94 7.95 -51.93 -0.41 0.53 16 43 H 0.09 0.94 7.91 -51.93 -0.41 0.53 16 44 H 0.09 1.42 7.66 -51.93 -0.40 1.02 16 45 H 0.08 1.02 7.93 -51.93 -0.41 0.61 16 LS Contribution 384.07 15.07 5.79 5.79 Total: -1.00 -32.52 384.07 -7.67 -40.18 By element: Atomic # 1 Polarization: 10.07 SS G_CDS: -6.05 Total: 4.02 kcal Atomic # 6 Polarization: 4.35 SS G_CDS: -3.27 Total: 1.07 kcal Atomic # 7 Polarization: -48.52 SS G_CDS: 0.12 Total: -48.40 kcal Atomic # 8 Polarization: -18.56 SS G_CDS: 0.37 Total: -18.18 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -4.61 Total: 15.52 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -32.52 -7.67 -40.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275808900.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 176.004 kcal (2) G-P(sol) polarization free energy of solvation -32.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 143.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.183 kcal (6) G-S(sol) free energy of system = (1) + (5) 135.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds