Wall clock time and date at job start Wed Apr 1 2020 03:48:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35311 * 128.03907 * 2 1 4 4 O 1.34016 * 106.66749 * 179.72252 * 3 2 1 5 5 N 1.20904 * 111.84783 * 0.24353 * 4 3 2 6 6 C 1.30986 * 111.43779 * 359.97438 * 5 4 3 7 7 C 1.48333 * 126.94138 * 179.97438 * 6 5 4 8 8 O 1.21488 * 120.00629 * 180.02562 * 7 6 5 9 9 N 1.34782 * 119.99494 * 0.02562 * 7 6 5 10 10 C 1.46506 * 119.99795 * 180.02562 * 9 7 6 11 11 C 1.54895 * 129.08607 * 299.93836 * 10 9 7 12 12 C 1.57170 * 77.91186 * 180.16554 * 11 10 9 13 13 C 1.50704 * 129.24514 * 179.19670 * 12 11 10 14 14 O 1.21281 * 119.99754 * 241.28212 * 13 12 11 15 15 N 1.34774 * 120.00359 * 61.28493 * 13 12 11 16 16 C 1.47070 * 136.05605 * 359.62769 * 15 13 12 17 17 C 1.53749 * 87.88801 * 152.96212 * 16 15 13 18 18 C 1.50697 * 114.08570 * 139.78139 * 17 16 15 19 19 H 1.08007 * 120.00141 * 266.56145 * 18 17 16 20 20 C 1.37880 * 120.00472 * 86.56032 * 18 17 16 21 21 N 1.31510 * 120.00210 * 179.97438 * 20 18 17 22 22 Si 1.86797 * 119.99763 * 0.02562 * 20 18 17 23 23 H 1.48505 * 109.47164 * 89.99812 * 22 20 18 24 24 H 1.48497 * 109.46959 * 210.00016 * 22 20 18 25 25 H 1.48504 * 109.46828 * 330.00086 * 22 20 18 26 26 C 1.47060 * 136.06131 * 179.97438 * 15 13 12 27 27 C 1.54414 * 129.01199 * 180.02562 * 10 9 7 28 28 C 1.54885 * 129.09169 * 60.05635 * 10 9 7 29 29 H 1.08999 * 109.47518 * 90.02035 * 1 2 3 30 30 H 1.09003 * 109.47340 * 210.01988 * 1 2 3 31 31 H 1.09005 * 109.47010 * 330.01877 * 1 2 3 32 32 H 1.08002 * 126.67004 * 359.97438 * 3 2 1 33 33 H 0.96992 * 120.00339 * 359.97438 * 9 7 6 34 34 H 1.09005 * 114.97423 * 291.95934 * 11 10 9 35 35 H 1.08996 * 114.97656 * 67.13386 * 11 10 9 36 36 H 1.08997 * 113.46741 * 267.69698 * 16 15 13 37 37 H 1.08996 * 113.46724 * 38.13155 * 16 15 13 38 38 H 1.08996 * 114.39556 * 272.67519 * 17 16 15 39 39 H 0.97003 * 120.00093 * 180.02562 * 21 20 18 40 40 H 1.09012 * 113.46528 * 321.86325 * 26 15 13 41 41 H 1.08994 * 113.46941 * 92.30123 * 26 15 13 42 42 H 1.08996 * 114.93156 * 293.12884 * 27 10 9 43 43 H 1.08998 * 114.93064 * 68.09916 * 27 10 9 44 44 H 1.09001 * 114.98020 * 292.87364 * 28 10 9 45 45 H 1.09005 * 114.97043 * 68.04622 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3408 1.0657 0.0000 4 8 3.5888 0.5773 0.0062 5 7 3.5988 -0.6317 0.0051 6 6 2.3836 -1.1205 -0.0014 7 6 1.9991 -2.5531 -0.0052 8 8 0.8255 -2.8671 -0.0116 9 7 2.9518 -3.5066 -0.0014 10 6 2.5720 -4.9215 -0.0058 11 6 1.7336 -5.7109 1.0303 12 6 2.0779 -6.8203 -0.0285 13 6 1.7092 -8.2815 -0.0325 14 8 2.5791 -9.1264 -0.0140 15 7 0.4129 -8.6494 -0.0569 16 6 -0.8843 -7.9566 -0.0768 17 6 -1.4665 -9.1876 -0.7907 18 6 -2.8453 -9.5753 -0.3222 19 1 -2.9630 -10.3119 0.4589 20 6 -3.9567 -8.9898 -0.8906 21 7 -5.1600 -9.3285 -0.4820 22 14 -3.7532 -7.7163 -2.2420 23 1 -3.7416 -8.3942 -3.5633 24 1 -4.8829 -6.7539 -2.1893 25 1 -2.4734 -6.9886 -2.0477 26 6 -0.3272 -9.9201 -0.0690 27 6 3.4788 -6.1713 -0.0022 28 6 1.7450 -5.7076 -1.0532 29 1 -0.3634 -0.0004 -1.0276 30 1 -0.3634 -0.8898 0.5141 31 1 -0.3633 0.8902 0.5136 32 1 2.0560 2.1075 -0.0004 33 1 3.8887 -3.2559 0.0034 34 1 2.2099 -5.8451 2.0015 35 1 0.6845 -5.4214 1.0899 36 1 -1.3036 -7.7918 0.9157 37 1 -0.8859 -7.0559 -0.6905 38 1 -1.3677 -9.1672 -1.8760 39 1 -5.9418 -8.9168 -0.8822 40 1 0.1457 -10.6921 -0.6762 41 1 -0.5996 -10.2734 0.9255 42 1 4.0683 -6.3139 -0.9079 43 1 4.0416 -6.3280 0.9180 44 1 0.6966 -5.4179 -1.1236 45 1 2.2320 -5.8389 -2.0196 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001275808900.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:48:26 Heat of formation + Delta-G solvation = 113.428230 kcal Electronic energy + Delta-G solvation = -29751.351383 eV Core-core repulsion = 25548.901604 eV Total energy + Delta-G solvation = -4202.449779 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -46.18402 -43.34708 -40.99736 -40.33652 -38.68557 -35.73672 -35.28171 -34.68615 -33.22058 -31.54604 -29.19458 -28.03173 -27.05692 -26.97185 -26.71600 -26.56997 -24.86156 -22.72102 -22.42757 -21.52460 -20.42317 -19.52589 -19.35734 -19.10129 -18.87522 -18.17850 -17.64475 -17.40556 -16.72953 -16.17035 -16.09379 -15.94012 -15.55698 -15.42233 -15.32981 -15.05049 -14.82318 -14.61122 -14.26518 -14.15102 -13.76716 -13.51895 -13.49097 -13.38210 -13.08321 -12.82022 -12.61373 -12.51133 -12.43418 -12.34672 -11.88654 -11.75156 -11.65263 -11.63958 -11.43861 -11.35757 -11.21890 -10.92620 -10.66929 -10.43153 -10.37201 -9.71970 -8.29630 -6.36544 -0.02790 0.67424 1.28770 1.36183 1.38829 1.42493 1.51158 1.85278 1.86700 2.20641 2.36218 2.70492 2.97392 3.01568 3.06509 3.19662 3.20879 3.30937 3.36209 3.57176 3.85647 3.98741 4.04856 4.23910 4.36396 4.37634 4.41765 4.47130 4.50630 4.57777 4.67052 4.67678 4.69366 4.75231 4.75604 4.79838 4.80615 4.83718 4.91194 4.92532 5.22043 5.33025 5.33265 5.58409 6.10439 6.26642 6.68701 6.74145 6.77679 6.97852 7.03192 7.30919 8.85770 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.011662 B = 0.002894 C = 0.002396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2400.377670 B = 9672.274281 C =11681.695277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.174 4.174 3 C -0.030 4.030 4 O 0.134 5.866 5 N -0.344 5.344 6 C -0.054 4.054 7 C 0.599 3.401 8 O -0.534 6.534 9 N -0.653 5.653 10 C 0.108 3.892 11 C -0.097 4.097 12 C -0.165 4.165 13 C 0.599 3.401 14 O -0.580 6.580 15 N -0.637 5.637 16 C 0.100 3.900 17 C -0.013 4.013 18 C -0.511 4.511 19 H 0.045 0.955 20 C 0.024 3.976 21 N -0.941 5.941 22 Si 0.934 3.066 23 H -0.270 1.270 24 H -0.288 1.288 25 H -0.238 1.238 26 C 0.117 3.883 27 C -0.062 4.062 28 C -0.100 4.100 29 H 0.077 0.923 30 H 0.058 0.942 31 H 0.103 0.897 32 H 0.277 0.723 33 H 0.425 0.575 34 H 0.093 0.907 35 H 0.074 0.926 36 H 0.084 0.916 37 H 0.069 0.931 38 H 0.067 0.933 39 H 0.268 0.732 40 H 0.071 0.929 41 H 0.083 0.917 42 H 0.099 0.901 43 H 0.101 0.899 44 H 0.073 0.927 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.151 25.561 0.159 31.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.179 4.179 3 C -0.110 4.110 4 O 0.056 5.944 5 N -0.043 5.043 6 C -0.211 4.211 7 C 0.384 3.616 8 O -0.409 6.409 9 N -0.303 5.303 10 C 0.019 3.981 11 C -0.136 4.136 12 C -0.169 4.169 13 C 0.389 3.611 14 O -0.461 6.461 15 N -0.369 5.369 16 C -0.023 4.023 17 C -0.032 4.032 18 C -0.549 4.549 19 H 0.064 0.936 20 C -0.175 4.175 21 N -0.580 5.580 22 Si 0.757 3.243 23 H -0.196 1.196 24 H -0.214 1.214 25 H -0.161 1.161 26 C -0.005 4.005 27 C -0.100 4.100 28 C -0.139 4.139 29 H 0.096 0.904 30 H 0.077 0.923 31 H 0.121 0.879 32 H 0.292 0.708 33 H 0.263 0.737 34 H 0.112 0.888 35 H 0.093 0.907 36 H 0.102 0.898 37 H 0.088 0.912 38 H 0.085 0.915 39 H 0.077 0.923 40 H 0.090 0.910 41 H 0.101 0.899 42 H 0.118 0.882 43 H 0.119 0.881 44 H 0.091 0.909 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 19.014 24.364 0.160 30.906 hybrid contribution -1.066 0.220 -0.365 1.148 sum 17.948 24.585 -0.204 30.440 Atomic orbital electron populations 1.20225 0.86080 1.04097 1.03427 1.21652 0.99809 0.90189 1.06283 1.26665 0.80275 1.02666 1.01441 1.84743 1.30722 1.14294 1.64670 1.74163 1.21172 0.92770 1.16176 1.23290 0.90914 0.96174 1.10761 1.17171 0.85196 0.83138 0.76060 1.90824 1.18518 1.82001 1.49533 1.44334 1.10261 1.02089 1.73660 1.22556 0.97941 0.80472 0.97154 1.24855 1.00922 0.90831 0.97016 1.23494 1.01598 0.89860 1.01947 1.18247 0.80006 0.87680 0.75175 1.90646 1.48558 1.53417 1.53504 1.49793 1.04017 1.12625 1.70459 1.23745 0.78845 0.98305 1.01397 1.20723 0.92892 0.93357 0.96239 1.20907 0.89223 1.23921 1.20831 0.93627 1.25789 0.94555 0.98359 0.98763 1.70023 0.98907 1.44714 1.44343 0.85947 0.79249 0.79416 0.79642 1.19575 1.21391 1.16106 1.23046 0.89100 0.87376 1.00937 1.23922 0.93268 0.88009 1.04785 1.24400 1.00964 0.91195 0.97309 0.90445 0.92265 0.87883 0.70803 0.73663 0.88826 0.90716 0.89751 0.91222 0.91538 0.92283 0.91038 0.89933 0.88235 0.88079 0.90854 0.89149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.11 10.00 71.24 0.71 -0.39 16 2 C -0.17 -2.53 6.34 -19.54 -0.12 -2.65 16 3 C -0.03 -0.21 12.24 67.14 0.82 0.62 16 4 O 0.13 1.59 11.18 71.88 0.80 2.39 16 5 N -0.34 -5.90 11.84 -49.52 -0.59 -6.48 16 6 C -0.05 -1.06 7.19 42.96 0.31 -0.75 16 7 C 0.60 14.51 7.85 86.93 0.68 15.19 16 8 O -0.53 -16.30 15.22 -3.68 -0.06 -16.36 16 9 N -0.65 -13.31 5.71 -477.21 -2.73 -16.04 16 10 C 0.11 2.45 3.79 -7.16 -0.03 2.42 16 11 C -0.10 -2.54 7.88 31.90 0.25 -2.29 16 12 C -0.17 -4.76 3.33 -62.87 -0.21 -4.97 16 13 C 0.60 22.14 8.19 87.66 0.72 22.85 16 14 O -0.58 -24.55 17.87 -3.03 -0.05 -24.60 16 15 N -0.64 -24.36 3.69 -857.95 -3.16 -27.52 16 16 C 0.10 3.89 7.43 83.26 0.62 4.51 16 17 C -0.01 -0.54 2.97 -11.13 -0.03 -0.58 16 18 C -0.51 -26.98 9.37 25.60 0.24 -26.74 16 19 H 0.05 2.66 8.06 -2.91 -0.02 2.64 16 20 C 0.02 1.32 5.47 84.66 0.46 1.79 16 21 N -0.94 -55.92 13.96 21.45 0.30 -55.62 16 22 Si 0.93 41.50 27.15 68.60 1.86 43.36 16 23 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 24 H -0.29 -12.84 7.11 99.48 0.71 -12.14 16 25 H -0.24 -9.63 5.73 99.48 0.57 -9.06 16 26 C 0.12 4.66 8.17 83.16 0.68 5.34 16 27 C -0.06 -1.32 7.78 30.61 0.24 -1.09 16 28 C -0.10 -2.66 7.77 31.09 0.24 -2.41 16 29 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.06 1.18 6.90 -2.39 -0.02 1.16 16 31 H 0.10 0.72 8.14 -2.38 -0.02 0.70 16 32 H 0.28 -1.31 8.06 -2.91 -0.02 -1.33 16 33 H 0.42 6.61 8.59 -92.71 -0.80 5.81 16 34 H 0.09 2.17 7.91 -2.38 -0.02 2.15 16 35 H 0.07 2.21 7.97 -2.39 -0.02 2.19 16 36 H 0.08 3.32 8.10 -2.39 -0.02 3.30 16 37 H 0.07 2.60 6.84 -2.39 -0.02 2.58 16 38 H 0.07 2.84 7.03 -2.39 -0.02 2.82 16 39 H 0.27 14.96 8.31 -92.71 -0.77 14.19 16 40 H 0.07 2.71 8.14 -2.38 -0.02 2.69 16 41 H 0.08 3.26 8.10 -2.39 -0.02 3.24 16 42 H 0.10 1.88 7.95 -2.39 -0.02 1.86 16 43 H 0.10 1.90 7.91 -2.39 -0.02 1.88 16 44 H 0.07 2.23 7.66 -2.39 -0.02 2.21 16 45 H 0.09 2.17 7.93 -2.38 -0.02 2.15 16 Total: -1.00 -73.10 384.07 2.07 -71.03 By element: Atomic # 1 Polarization: 18.91 SS G_CDS: 0.11 Total: 19.02 kcal Atomic # 6 Polarization: 5.25 SS G_CDS: 5.58 Total: 10.83 kcal Atomic # 7 Polarization: -99.49 SS G_CDS: -6.18 Total: -105.67 kcal Atomic # 8 Polarization: -39.27 SS G_CDS: 0.69 Total: -38.58 kcal Atomic # 14 Polarization: 41.50 SS G_CDS: 1.86 Total: 43.36 kcal Total: -73.10 2.07 -71.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275808900.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 184.457 kcal (2) G-P(sol) polarization free energy of solvation -73.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.028 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds