Wall clock time and date at job start Wed Apr 1 2020 03:48:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35316 * 128.04052 * 2 1 4 4 O 1.34012 * 106.67142 * 180.02562 * 3 2 1 5 5 N 1.20909 * 111.84196 * 359.69860 * 4 3 2 6 6 C 1.30977 * 111.44213 * 0.49517 * 5 4 3 7 7 C 1.48325 * 126.94077 * 179.79749 * 6 5 4 8 8 O 1.21498 * 120.00460 * 179.68479 * 7 6 5 9 9 N 1.34781 * 120.00009 * 359.67618 * 7 6 5 10 10 C 1.47362 * 127.43185 * 358.99736 * 9 7 6 11 11 C 1.54389 * 105.12798 * 219.00987 * 10 9 7 12 12 H 1.09004 * 117.61219 * 116.61148 * 11 10 9 13 13 C 1.53000 * 118.89924 * 274.17633 * 11 10 9 14 14 C 1.53004 * 60.55551 * 91.09932 * 13 11 10 15 15 C 1.50697 * 120.26237 * 111.47636 * 14 13 11 16 16 O 1.21282 * 119.99990 * 291.80277 * 15 14 13 17 17 N 1.34770 * 120.00085 * 111.80487 * 15 14 13 18 18 C 1.47075 * 136.05609 * 359.62983 * 17 15 14 19 19 C 1.53243 * 88.08280 * 207.20500 * 18 17 15 20 20 C 1.50697 * 114.50434 * 220.45628 * 19 18 17 21 21 H 1.08007 * 120.00162 * 93.84150 * 20 19 18 22 22 C 1.37876 * 119.99859 * 273.84237 * 20 19 18 23 23 N 1.31510 * 120.00141 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99914 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47364 * 59.99662 * 24 22 20 26 26 H 1.48496 * 109.46993 * 179.97438 * 24 22 20 27 27 H 1.48507 * 109.47019 * 300.00112 * 24 22 20 28 28 C 1.47070 * 136.05953 * 179.97438 * 17 15 14 29 29 C 1.48146 * 127.83955 * 179.97438 * 9 7 6 30 30 H 1.08996 * 109.47628 * 269.97878 * 1 2 3 31 31 H 1.09002 * 109.47165 * 29.97999 * 1 2 3 32 32 H 1.09001 * 109.46819 * 149.97468 * 1 2 3 33 33 H 1.08008 * 126.66046 * 0.03001 * 3 2 1 34 34 H 1.09008 * 108.98294 * 100.65382 * 10 9 7 35 35 H 1.08999 * 111.42882 * 338.62820 * 10 9 7 36 36 H 1.09000 * 117.44690 * 343.44929 * 13 11 10 37 37 H 1.09006 * 117.44005 * 198.74625 * 13 11 10 38 38 H 1.08997 * 113.46210 * 321.93090 * 18 17 15 39 39 H 1.08993 * 113.47184 * 92.37217 * 18 17 15 40 40 H 1.08997 * 114.01862 * 87.70743 * 19 18 17 41 41 H 0.96996 * 119.99980 * 180.02562 * 23 22 20 42 42 H 1.09006 * 113.46576 * 267.62037 * 28 17 15 43 43 H 1.08997 * 113.46849 * 38.05987 * 28 17 15 44 44 H 1.09002 * 110.40776 * 21.63579 * 29 9 7 45 45 H 1.09002 * 110.40863 * 259.31987 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3408 1.0657 0.0000 4 8 3.5888 0.5774 -0.0006 5 7 3.5988 -0.6316 0.0050 6 6 2.3837 -1.1205 -0.0005 7 6 1.9992 -2.5531 -0.0006 8 8 0.8255 -2.8671 -0.0004 9 7 2.9518 -3.5065 -0.0012 10 6 4.4126 -3.3132 -0.0222 11 6 4.9521 -4.4197 -0.9539 12 1 5.4521 -4.1085 -1.8712 13 6 5.2433 -5.8028 -0.3680 14 6 3.8599 -5.5094 -0.9522 15 6 3.4121 -6.1875 -2.2213 16 8 3.9489 -5.9177 -3.2749 17 7 2.4151 -7.0936 -2.1856 18 6 1.5504 -7.6764 -1.1484 19 6 1.4273 -8.9265 -2.0261 20 6 0.0463 -9.5282 -2.0666 21 1 -0.6402 -9.2525 -2.8536 22 6 -0.3410 -10.4308 -1.0988 23 7 0.4946 -10.7661 -0.1403 24 14 -2.0527 -11.1773 -1.1493 25 1 -2.2321 -11.9184 -2.4236 26 1 -2.2194 -12.1107 -0.0066 27 1 -3.0670 -10.0964 -1.0584 28 6 1.7172 -7.9393 -3.1657 29 6 2.7665 -4.9763 -0.0009 30 1 -0.3634 -0.0004 1.0276 31 1 -0.3633 0.8902 -0.5135 32 1 -0.3633 -0.8898 -0.5142 33 1 2.0558 2.1075 0.0005 34 1 4.8020 -3.4432 0.9875 35 1 4.6785 -2.3288 -0.4074 36 1 5.3242 -5.8822 0.7161 37 1 5.8995 -6.4614 -0.9370 38 1 2.0661 -7.8589 -0.2057 39 1 0.6089 -7.1429 -1.0181 40 1 2.2137 -9.6631 -1.8619 41 1 0.2222 -11.4013 0.5403 42 1 0.8203 -7.4766 -3.5777 43 1 2.3742 -8.3450 -3.9349 44 1 1.7766 -5.2347 -0.3768 45 1 2.9076 -5.3770 1.0029 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001275809010.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:48:23 Heat of formation + Delta-G solvation = 60.259819 kcal Electronic energy + Delta-G solvation = -30281.412284 eV Core-core repulsion = 26076.656950 eV Total energy + Delta-G solvation = -4204.755334 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -46.19624 -42.16337 -40.84179 -39.73440 -38.45677 -35.76906 -35.11225 -34.68538 -33.31434 -31.46649 -29.76957 -29.24911 -27.96492 -27.25121 -26.77011 -25.09264 -23.99988 -22.78423 -22.34248 -21.40567 -21.11455 -19.76847 -18.90216 -18.83175 -18.66490 -18.11723 -17.74092 -17.06530 -16.89235 -16.82691 -16.56290 -16.19273 -15.40818 -15.27442 -14.95603 -14.83305 -14.51596 -14.30237 -14.18443 -14.16478 -13.97236 -13.73720 -13.41174 -13.29912 -13.23135 -13.02074 -12.78754 -12.75767 -12.62806 -12.39243 -12.21896 -11.84667 -11.71058 -11.44575 -11.35166 -11.13949 -11.09197 -10.79438 -10.55274 -10.43589 -10.08456 -9.67155 -8.18873 -6.29975 -0.03348 0.66890 1.30322 1.42543 1.47276 1.47510 1.55140 1.82650 1.88159 2.22197 2.30651 2.44323 2.71279 3.10549 3.19278 3.28783 3.36771 3.45400 3.63796 3.79272 3.88917 4.02849 4.16263 4.21477 4.30955 4.33333 4.37448 4.46144 4.51221 4.57896 4.62737 4.64912 4.73563 4.76654 4.78593 4.80002 4.85892 4.90492 4.91952 5.02063 5.03082 5.28917 5.55239 5.78523 6.10358 6.20039 6.60572 6.77010 6.78502 7.00050 7.03203 7.39796 8.90874 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.013436 B = 0.002847 C = 0.002521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2083.413574 B = 9831.156242 C =11103.434933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.176 4.176 3 C -0.027 4.027 4 O 0.135 5.865 5 N -0.340 5.340 6 C -0.054 4.054 7 C 0.607 3.393 8 O -0.554 6.554 9 N -0.612 5.612 10 C 0.126 3.874 11 C -0.130 4.130 12 H 0.124 0.876 13 C -0.072 4.072 14 C -0.208 4.208 15 C 0.571 3.429 16 O -0.596 6.596 17 N -0.638 5.638 18 C 0.117 3.883 19 C 0.030 3.970 20 C -0.533 4.533 21 H 0.063 0.937 22 C 0.025 3.975 23 N -0.914 5.914 24 Si 0.957 3.043 25 H -0.271 1.271 26 H -0.284 1.284 27 H -0.271 1.271 28 C 0.103 3.897 29 C 0.150 3.850 30 H 0.081 0.919 31 H 0.105 0.895 32 H 0.052 0.948 33 H 0.280 0.720 34 H 0.107 0.893 35 H 0.109 0.891 36 H 0.141 0.859 37 H 0.114 0.886 38 H 0.066 0.934 39 H 0.069 0.931 40 H 0.045 0.955 41 H 0.266 0.734 42 H 0.078 0.922 43 H 0.060 0.940 44 H 0.065 0.935 45 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.337 23.995 6.065 25.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.181 4.181 3 C -0.107 4.107 4 O 0.057 5.943 5 N -0.039 5.039 6 C -0.211 4.211 7 C 0.395 3.605 8 O -0.431 6.431 9 N -0.345 5.345 10 C 0.004 3.996 11 C -0.150 4.150 12 H 0.142 0.858 13 C -0.109 4.109 14 C -0.212 4.212 15 C 0.362 3.638 16 O -0.479 6.479 17 N -0.370 5.370 18 C -0.005 4.005 19 C 0.010 3.990 20 C -0.571 4.571 21 H 0.081 0.919 22 C -0.176 4.176 23 N -0.552 5.552 24 Si 0.782 3.218 25 H -0.196 1.196 26 H -0.209 1.209 27 H -0.196 1.196 28 C -0.019 4.019 29 C 0.028 3.972 30 H 0.100 0.900 31 H 0.124 0.876 32 H 0.071 0.929 33 H 0.295 0.705 34 H 0.124 0.876 35 H 0.127 0.873 36 H 0.159 0.841 37 H 0.133 0.867 38 H 0.085 0.915 39 H 0.088 0.912 40 H 0.063 0.937 41 H 0.075 0.925 42 H 0.096 0.904 43 H 0.078 0.922 44 H 0.084 0.916 45 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 8.260 23.442 5.698 25.499 hybrid contribution -1.859 -0.800 -0.384 2.060 sum 6.401 22.642 5.314 24.122 Atomic orbital electron populations 1.20216 0.86019 1.03876 1.03552 1.21671 0.99917 0.90072 1.06446 1.26669 0.80207 1.02552 1.01307 1.84749 1.30741 1.14367 1.64399 1.74136 1.20899 0.92592 1.16259 1.23213 0.91155 0.95771 1.10911 1.16920 0.84141 0.83105 0.76329 1.90789 1.18288 1.82187 1.51804 1.49003 1.07988 1.06201 1.71264 1.22177 0.77326 0.99425 1.00642 1.23901 0.99332 0.89297 1.02473 0.85771 1.23286 0.89563 0.94844 1.03217 1.22537 0.93152 1.07745 0.97786 1.19231 0.78611 0.76894 0.89033 1.90609 1.58505 1.65382 1.33358 1.49903 1.32851 1.39151 1.15092 1.23275 0.91102 0.93369 0.92764 1.20148 0.97054 0.91018 0.90737 1.21149 0.98455 1.25664 1.11792 0.91859 1.25721 1.00894 0.96148 0.94863 1.70028 1.36945 1.33860 1.14353 0.85633 0.80101 0.78359 0.77721 1.19580 1.20921 1.19604 1.23275 0.94344 0.89783 0.94493 1.21706 0.97521 0.78499 0.99495 0.90041 0.87628 0.92893 0.70492 0.87554 0.87254 0.84108 0.86737 0.91507 0.91250 0.93678 0.92507 0.90433 0.92158 0.91621 0.87096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.31 10.01 71.23 0.71 -0.60 16 2 C -0.18 -3.20 6.34 -19.54 -0.12 -3.32 16 3 C -0.03 -0.26 12.24 67.15 0.82 0.57 16 4 O 0.14 2.00 11.18 71.92 0.80 2.80 16 5 N -0.34 -7.22 9.24 -49.52 -0.46 -7.68 16 6 C -0.05 -1.35 7.05 42.96 0.30 -1.05 16 7 C 0.61 19.45 7.93 86.93 0.69 20.14 16 8 O -0.55 -21.27 15.61 -3.71 -0.06 -21.33 16 9 N -0.61 -17.81 3.30 -812.74 -2.69 -20.50 16 10 C 0.13 2.78 6.42 86.69 0.56 3.33 16 11 C -0.13 -3.18 6.76 -9.89 -0.07 -3.25 16 12 H 0.12 3.22 8.14 -2.38 -0.02 3.20 16 13 C -0.07 -1.57 9.92 30.60 0.30 -1.26 16 14 C -0.21 -6.45 2.72 -52.01 -0.14 -6.59 16 15 C 0.57 23.53 7.71 87.66 0.68 24.21 16 16 O -0.60 -27.93 17.59 -3.04 -0.05 -27.99 16 17 N -0.64 -27.34 3.61 -858.65 -3.10 -30.44 16 18 C 0.12 5.12 6.35 83.10 0.53 5.65 16 19 C 0.03 1.44 3.76 -11.28 -0.04 1.40 16 20 C -0.53 -27.72 8.84 25.60 0.23 -27.49 16 21 H 0.06 3.22 7.81 -2.91 -0.02 3.19 16 22 C 0.02 1.29 5.46 84.66 0.46 1.75 16 23 N -0.91 -50.12 13.26 21.45 0.28 -49.83 16 24 Si 0.96 41.57 29.54 68.60 2.03 43.60 16 25 H -0.27 -11.49 7.11 99.48 0.71 -10.79 16 26 H -0.28 -12.13 7.11 99.48 0.71 -11.43 16 27 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 28 C 0.10 4.55 8.19 83.19 0.68 5.23 16 29 C 0.15 4.59 6.12 86.55 0.53 5.11 16 30 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.05 1.26 6.89 -2.39 -0.02 1.25 16 33 H 0.28 -0.80 8.06 -2.91 -0.02 -0.83 16 34 H 0.11 1.79 8.14 -2.38 -0.02 1.77 16 35 H 0.11 2.39 5.62 -2.39 -0.01 2.37 16 36 H 0.14 2.15 8.14 -2.39 -0.02 2.13 16 37 H 0.11 2.52 8.14 -2.38 -0.02 2.50 16 38 H 0.07 2.82 8.14 -2.39 -0.02 2.80 16 39 H 0.07 3.10 8.03 -2.39 -0.02 3.08 16 40 H 0.05 2.38 8.11 -2.39 -0.02 2.36 16 41 H 0.27 13.88 8.31 -92.71 -0.77 13.11 16 42 H 0.08 3.33 8.10 -2.38 -0.02 3.31 16 43 H 0.06 2.59 8.14 -2.39 -0.02 2.57 16 44 H 0.07 2.44 6.45 -2.39 -0.02 2.42 16 45 H 0.11 2.84 8.14 -2.39 -0.02 2.82 16 Total: -1.00 -74.27 381.13 3.90 -70.37 By element: Atomic # 1 Polarization: 16.15 SS G_CDS: 1.03 Total: 17.17 kcal Atomic # 6 Polarization: 17.71 SS G_CDS: 6.12 Total: 23.82 kcal Atomic # 7 Polarization: -102.49 SS G_CDS: -5.96 Total: -108.45 kcal Atomic # 8 Polarization: -47.21 SS G_CDS: 0.69 Total: -46.51 kcal Atomic # 14 Polarization: 41.57 SS G_CDS: 2.03 Total: 43.60 kcal Total: -74.27 3.90 -70.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275809010.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.634 kcal (2) G-P(sol) polarization free energy of solvation -74.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.374 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds