Wall clock time and date at job start Wed Apr 1 2020 03:48:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35309 * 128.03780 * 2 1 4 4 O 1.34019 * 106.66771 * 179.97438 * 3 2 1 5 5 N 1.20915 * 111.84674 * 359.70662 * 4 3 2 6 6 C 1.30992 * 111.43421 * 0.48571 * 5 4 3 7 7 C 1.48331 * 126.93364 * 179.79841 * 6 5 4 8 8 O 1.21500 * 119.99473 * 179.68480 * 7 6 5 9 9 N 1.34766 * 120.00183 * 359.69005 * 7 6 5 10 10 C 1.47256 * 135.89969 * 180.02562 * 9 7 6 11 11 C 1.52617 * 87.76706 * 206.19434 * 10 9 7 12 12 C 1.52095 * 129.80625 * 195.60584 * 11 10 9 13 13 C 1.52094 * 129.80639 * 113.66786 * 11 10 9 14 14 H 1.09004 * 117.52088 * 226.49156 * 13 11 10 15 15 C 1.50699 * 117.52228 * 11.59618 * 13 11 10 16 16 O 1.21280 * 119.99878 * 0.02562 * 15 13 11 17 17 N 1.34773 * 119.99747 * 180.02562 * 15 13 11 18 18 C 1.47065 * 136.06145 * 359.62545 * 17 15 13 19 19 C 1.53751 * 87.89146 * 152.96640 * 18 17 15 20 20 C 1.50700 * 114.27077 * 139.79101 * 19 18 17 21 21 H 1.07996 * 120.00468 * 266.47773 * 20 19 18 22 22 C 1.37881 * 119.99636 * 86.47447 * 20 19 18 23 23 N 1.31513 * 120.00274 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 119.99910 * 180.02562 * 22 20 19 25 25 H 1.48507 * 109.47045 * 59.99876 * 24 22 20 26 26 H 1.48493 * 109.47389 * 179.97438 * 24 22 20 27 27 H 1.48505 * 109.47272 * 300.00472 * 24 22 20 28 28 C 1.47074 * 136.05469 * 180.02562 * 17 15 13 29 29 C 1.47256 * 135.90285 * 359.94296 * 9 7 6 30 30 H 1.09008 * 109.47380 * 270.00393 * 1 2 3 31 31 H 1.08996 * 109.47080 * 29.99967 * 1 2 3 32 32 H 1.08999 * 109.47186 * 150.00346 * 1 2 3 33 33 H 1.07997 * 126.67047 * 359.97438 * 3 2 1 34 34 H 1.09002 * 113.51451 * 320.93400 * 10 9 7 35 35 H 1.08995 * 113.51488 * 91.45637 * 10 9 7 36 36 H 1.08995 * 117.52097 * 348.34727 * 12 11 10 37 37 H 1.09003 * 117.52353 * 133.51573 * 12 11 10 38 38 H 1.08998 * 113.46785 * 267.69917 * 18 17 15 39 39 H 1.09000 * 113.46644 * 38.13452 * 18 17 15 40 40 H 1.09003 * 114.39712 * 272.68182 * 19 18 17 41 41 H 0.96993 * 120.00179 * 179.97438 * 23 22 20 42 42 H 1.08997 * 113.46489 * 321.85989 * 28 17 15 43 43 H 1.08997 * 113.46833 * 92.30535 * 28 17 15 44 44 H 1.09003 * 113.51264 * 268.47984 * 29 9 7 45 45 H 1.09000 * 113.51112 * 39.00038 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3407 1.0657 0.0000 4 8 3.5888 0.5774 0.0006 5 7 3.5989 -0.6317 0.0067 6 6 2.3836 -1.1206 0.0006 7 6 1.9991 -2.5532 0.0009 8 8 0.8254 -2.8671 0.0006 9 7 2.9517 -3.5065 0.0016 10 6 2.9742 -4.9789 0.0016 11 6 4.3411 -4.8985 0.6758 12 6 5.4086 -5.9689 0.8434 13 6 4.7636 -5.3229 2.0739 14 1 5.3687 -4.6237 2.6511 15 6 3.7940 -6.1562 2.8716 16 8 2.7229 -6.4642 2.3934 17 7 4.1172 -6.5593 4.1163 18 6 5.2733 -6.4061 5.0123 19 6 4.3052 -6.5661 6.1960 20 6 4.8436 -7.4028 7.3278 21 1 4.6300 -8.4607 7.3665 22 6 5.6091 -6.8176 8.3141 23 7 5.8689 -5.5293 8.2674 24 14 6.2771 -7.8548 9.7167 25 1 7.1521 -8.9227 9.1696 26 1 7.0630 -6.9950 10.6375 27 1 5.1476 -8.4718 10.4577 28 6 3.4718 -7.3519 5.1738 29 6 4.4241 -3.5303 0.0012 30 1 -0.3634 0.0001 1.0277 31 1 -0.3633 0.8900 -0.5138 32 1 -0.3633 -0.8900 -0.5138 33 1 2.0559 2.1074 -0.0004 34 1 2.2045 -5.4256 0.6309 35 1 3.0070 -5.4134 -0.9975 36 1 5.1316 -6.9971 0.6110 37 1 6.4377 -5.6945 0.6116 38 1 5.9965 -7.2175 4.9304 39 1 5.7366 -5.4209 4.9586 40 1 3.8438 -5.6365 6.5291 41 1 6.4071 -5.1176 8.9614 42 1 2.4000 -7.1725 5.2577 43 1 3.7205 -8.4124 5.1345 44 1 4.8582 -3.5649 -0.9980 45 1 4.8716 -2.7601 0.6293 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001275809439.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:48:09 Heat of formation + Delta-G solvation = 106.717038 kcal Electronic energy + Delta-G solvation = -29508.089869 eV Core-core repulsion = 25305.349071 eV Total energy + Delta-G solvation = -4202.740798 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -45.36038 -40.89437 -39.42610 -38.40842 -36.96766 -34.93645 -34.62825 -32.73331 -32.66618 -29.51794 -28.77123 -28.06018 -26.33604 -25.61340 -25.00406 -24.21061 -23.25190 -21.92870 -20.65337 -20.16808 -19.08275 -18.06447 -18.03847 -17.96130 -16.97589 -16.82910 -16.53251 -15.92166 -15.81751 -15.19217 -14.87357 -14.53126 -14.45594 -14.29452 -13.95277 -13.62172 -13.44224 -13.33357 -13.16350 -12.94885 -12.64789 -12.46437 -12.26516 -11.97020 -11.65713 -11.55951 -11.36702 -10.97575 -10.95637 -10.83455 -10.71030 -10.55626 -10.45396 -10.36030 -10.06789 -9.74549 -9.61181 -9.24793 -9.04654 -8.83214 -8.61107 -7.90589 -6.21119 -4.27072 0.88445 1.38384 2.40043 2.82088 2.84799 2.98265 3.23247 3.28577 3.29175 3.34397 3.59582 3.83434 4.08266 4.15487 4.30632 4.36189 4.52712 4.74882 4.76075 4.93226 5.05762 5.12519 5.13746 5.24733 5.31051 5.34087 5.37657 5.49147 5.52933 5.59473 5.61867 5.73762 5.86322 5.96975 6.00664 6.02946 6.16080 6.22684 6.41191 6.53278 6.62024 6.77363 7.45357 7.52060 7.64178 7.76446 7.92489 8.14574 8.47342 8.71133 8.76926 9.39882 10.88591 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.013867 B = 0.002345 C = 0.002207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2018.719582 B =11937.295585 C =12684.486858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.150 4.150 3 C -0.068 4.068 4 O 0.123 5.877 5 N -0.327 5.327 6 C -0.021 4.021 7 C 0.627 3.373 8 O -0.519 6.519 9 N -0.630 5.630 10 C 0.143 3.857 11 C -0.157 4.157 12 C -0.116 4.116 13 C -0.138 4.138 14 H 0.127 0.873 15 C 0.560 3.440 16 O -0.560 6.560 17 N -0.638 5.638 18 C 0.099 3.901 19 C 0.035 3.965 20 C -0.518 4.518 21 H 0.063 0.937 22 C 0.069 3.931 23 N -0.886 5.886 24 Si 0.896 3.104 25 H -0.275 1.275 26 H -0.287 1.287 27 H -0.275 1.275 28 C 0.100 3.900 29 C 0.145 3.855 30 H 0.078 0.922 31 H 0.072 0.928 32 H 0.086 0.914 33 H 0.224 0.776 34 H 0.111 0.889 35 H 0.090 0.910 36 H 0.106 0.894 37 H 0.112 0.888 38 H 0.076 0.924 39 H 0.059 0.941 40 H 0.068 0.932 41 H 0.265 0.735 42 H 0.057 0.943 43 H 0.074 0.926 44 H 0.096 0.904 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.354 11.272 -18.763 21.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.155 4.155 3 C -0.148 4.148 4 O 0.047 5.953 5 N -0.027 5.027 6 C -0.180 4.180 7 C 0.414 3.586 8 O -0.393 6.393 9 N -0.364 5.364 10 C 0.022 3.978 11 C -0.159 4.159 12 C -0.154 4.154 13 C -0.159 4.159 14 H 0.144 0.856 15 C 0.349 3.651 16 O -0.441 6.441 17 N -0.370 5.370 18 C -0.024 4.024 19 C 0.016 3.984 20 C -0.556 4.556 21 H 0.082 0.918 22 C -0.135 4.135 23 N -0.523 5.523 24 Si 0.724 3.276 25 H -0.200 1.200 26 H -0.212 1.212 27 H -0.200 1.200 28 C -0.022 4.022 29 C 0.023 3.977 30 H 0.097 0.903 31 H 0.090 0.910 32 H 0.105 0.895 33 H 0.240 0.760 34 H 0.129 0.871 35 H 0.108 0.892 36 H 0.125 0.875 37 H 0.130 0.870 38 H 0.094 0.906 39 H 0.078 0.922 40 H 0.086 0.914 41 H 0.075 0.925 42 H 0.076 0.924 43 H 0.092 0.908 44 H 0.114 0.886 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -1.498 10.708 -19.105 21.953 hybrid contribution -0.088 -0.097 0.825 0.836 sum -1.586 10.611 -18.280 21.196 Atomic orbital electron populations 1.20236 0.86488 1.03814 1.03453 1.21382 0.99210 0.90017 1.04922 1.25777 0.82347 1.01290 1.05411 1.84782 1.29503 1.15290 1.65681 1.74206 1.21594 0.91511 1.15439 1.23362 0.89607 0.96681 1.08395 1.16174 0.84059 0.81383 0.76961 1.90798 1.16658 1.81219 1.50618 1.49185 1.07611 1.08039 1.71608 1.22602 0.96324 0.78518 1.00323 1.21901 0.97881 0.97128 0.98969 1.22784 0.97200 0.97700 0.97753 1.21994 1.01689 1.02648 0.89578 0.85558 1.19003 0.86487 0.80055 0.79552 1.90586 1.24771 1.59370 1.69358 1.49943 1.22875 1.51662 1.12555 1.23679 0.90573 1.00265 0.87861 1.20390 0.91213 0.96496 0.90304 1.20867 1.32661 0.94888 1.07222 0.91848 1.25032 0.95796 0.94924 0.97758 1.69938 1.37833 1.10047 1.34437 0.86586 0.79127 0.80111 0.81798 1.20039 1.21209 1.20023 1.23367 0.98205 0.96088 0.84497 1.22542 0.80065 0.94704 1.00428 0.90346 0.90950 0.89477 0.75971 0.87078 0.89160 0.87532 0.87015 0.90629 0.92240 0.91391 0.92540 0.92447 0.90780 0.88630 0.89516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.73 10.01 36.01 0.36 -0.37 16 2 C -0.15 -1.57 6.34 -104.12 -0.66 -2.23 16 3 C -0.07 -0.50 12.24 29.69 0.36 -0.13 16 4 O 0.12 1.21 11.18 17.23 0.19 1.40 16 5 N -0.33 -4.03 10.73 33.30 0.36 -3.67 16 6 C -0.02 -0.28 7.16 -82.52 -0.59 -0.88 16 7 C 0.63 9.97 8.10 -12.11 -0.10 9.88 16 8 O -0.52 -9.50 16.11 5.37 0.09 -9.42 16 9 N -0.63 -9.16 3.69 -185.06 -0.68 -9.85 16 10 C 0.14 2.02 8.20 -7.62 -0.06 1.96 16 11 C -0.16 -2.00 3.15 -155.75 -0.49 -2.49 16 12 C -0.12 -1.28 10.24 -27.08 -0.28 -1.56 16 13 C -0.14 -2.05 6.02 -92.12 -0.55 -2.60 16 14 H 0.13 1.79 8.14 -51.93 -0.42 1.37 16 15 C 0.56 10.81 7.86 -10.99 -0.09 10.73 16 16 O -0.56 -12.20 15.03 5.56 0.08 -12.12 16 17 N -0.64 -12.91 3.69 -185.04 -0.68 -13.59 16 18 C 0.10 2.03 8.00 -8.37 -0.07 1.97 16 19 C 0.04 0.82 3.79 -91.11 -0.35 0.48 16 20 C -0.52 -13.07 8.83 -34.44 -0.30 -13.38 16 21 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 22 C 0.07 1.77 5.46 -17.82 -0.10 1.67 16 23 N -0.89 -23.95 13.26 55.43 0.74 -23.22 16 24 Si 0.90 19.89 29.54 -169.99 -5.02 14.87 16 25 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 26 H -0.29 -6.36 7.11 56.52 0.40 -5.96 16 27 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 28 C 0.10 2.10 8.17 -8.49 -0.07 2.03 16 29 C 0.15 1.66 7.82 -7.54 -0.06 1.60 16 30 H 0.08 0.69 8.14 -51.92 -0.42 0.26 16 31 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.09 0.95 6.89 -51.93 -0.36 0.59 16 33 H 0.22 0.52 8.06 -52.49 -0.42 0.10 16 34 H 0.11 1.96 5.98 -51.93 -0.31 1.65 16 35 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.11 1.18 8.14 -51.93 -0.42 0.76 16 37 H 0.11 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.08 1.52 8.10 -51.93 -0.42 1.10 16 39 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 40 H 0.07 1.75 8.11 -51.93 -0.42 1.33 16 41 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 42 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 43 H 0.07 1.48 8.10 -51.93 -0.42 1.05 16 44 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 45 H 0.09 1.01 7.56 -51.93 -0.39 0.62 16 LS Contribution 388.14 15.07 5.85 5.85 Total: -1.00 -32.51 388.14 -8.22 -40.73 By element: Atomic # 1 Polarization: 8.44 SS G_CDS: -6.10 Total: 2.35 kcal Atomic # 6 Polarization: 9.71 SS G_CDS: -3.04 Total: 6.67 kcal Atomic # 7 Polarization: -50.06 SS G_CDS: -0.27 Total: -50.33 kcal Atomic # 8 Polarization: -20.50 SS G_CDS: 0.36 Total: -20.14 kcal Atomic # 14 Polarization: 19.89 SS G_CDS: -5.02 Total: 14.87 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -32.51 -8.22 -40.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275809439.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.448 kcal (2) G-P(sol) polarization free energy of solvation -32.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.731 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds