Wall clock time and date at job start Wed Apr 1 2020 03:48:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35312 * 128.03646 * 2 1 4 4 O 1.34016 * 106.66920 * 179.97438 * 3 2 1 5 5 N 1.20906 * 111.84547 * 359.70730 * 4 3 2 6 6 C 1.30985 * 111.43744 * 0.48261 * 5 4 3 7 7 C 1.48330 * 126.93917 * 179.79826 * 6 5 4 8 8 O 1.21497 * 120.00357 * 179.68598 * 7 6 5 9 9 N 1.34772 * 119.99851 * 359.68973 * 7 6 5 10 10 C 1.47728 * 134.39664 * 179.97438 * 9 7 6 11 11 C 1.53294 * 85.85812 * 155.92443 * 10 9 7 12 12 C 1.52327 * 128.81740 * 243.38170 * 11 10 9 13 13 C 1.52317 * 128.81912 * 163.01638 * 11 10 9 14 14 H 1.09002 * 117.51638 * 10.40781 * 13 11 10 15 15 C 1.50699 * 117.51816 * 225.33630 * 13 11 10 16 16 O 1.21280 * 120.00081 * 359.97438 * 15 13 11 17 17 N 1.34781 * 120.00312 * 179.97438 * 15 13 11 18 18 C 1.47580 * 134.49134 * 179.97438 * 17 15 13 19 19 C 1.53952 * 86.11500 * 155.36347 * 18 17 15 20 20 C 1.50695 * 113.74060 * 137.95290 * 19 18 17 21 21 H 1.07995 * 120.00496 * 0.02562 * 20 19 18 22 22 C 1.37880 * 119.99572 * 180.02562 * 20 19 18 23 23 N 1.31511 * 120.00327 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 119.99951 * 180.02562 * 22 20 19 25 25 H 1.48506 * 109.47297 * 59.99744 * 24 22 20 26 26 H 1.48503 * 109.47261 * 299.99924 * 24 22 20 27 27 H 1.48500 * 109.47454 * 179.97438 * 24 22 20 28 28 C 1.47578 * 134.49101 * 0.02562 * 17 15 13 29 29 C 1.47730 * 134.39516 * 0.02562 * 9 7 6 30 30 H 1.09000 * 109.47435 * 270.00494 * 1 2 3 31 31 H 1.09002 * 109.47139 * 30.00622 * 1 2 3 32 32 H 1.09003 * 109.46767 * 150.00664 * 1 2 3 33 33 H 1.08007 * 126.66615 * 359.97438 * 3 2 1 34 34 H 1.09003 * 113.80602 * 41.69107 * 10 9 7 35 35 H 1.08992 * 113.81434 * 270.15832 * 10 9 7 36 36 H 1.09003 * 117.51441 * 134.66395 * 12 11 10 37 37 H 1.08997 * 117.51669 * 349.53940 * 12 11 10 38 38 H 1.08998 * 113.77108 * 41.06531 * 18 17 15 39 39 H 1.08991 * 113.87349 * 269.67144 * 18 17 15 40 40 H 1.08997 * 113.74240 * 269.15892 * 19 18 17 41 41 H 0.97006 * 119.99995 * 359.97438 * 23 22 20 42 42 H 1.08997 * 113.77175 * 90.33932 * 28 17 15 43 43 H 1.09004 * 113.76848 * 318.93948 * 28 17 15 44 44 H 1.09005 * 113.81110 * 89.84176 * 29 9 7 45 45 H 1.09003 * 113.80855 * 318.31190 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3408 1.0657 0.0000 4 8 3.5888 0.5775 0.0006 5 7 3.5989 -0.6315 0.0066 6 6 2.3837 -1.1205 0.0007 7 6 1.9993 -2.5531 0.0009 8 8 0.8256 -2.8672 0.0007 9 7 2.9519 -3.5064 0.0016 10 6 2.9358 -4.9836 0.0025 11 6 4.3329 -4.8885 -0.6212 12 6 4.7997 -5.3558 -1.9938 13 6 5.4070 -5.9633 -0.7260 14 1 5.1241 -6.9846 -0.4706 15 6 6.8194 -5.5729 -0.3744 16 8 7.0656 -4.4381 -0.0243 17 7 7.8092 -6.4847 -0.4490 18 6 9.2618 -6.4580 -0.1895 19 6 9.1405 -7.9736 0.0522 20 6 10.2607 -8.7766 -0.5570 21 1 11.0486 -8.2778 -1.1016 22 6 10.2796 -10.1484 -0.4191 23 7 9.3198 -10.7560 0.2437 24 14 11.6685 -11.1439 -1.1735 25 1 12.9633 -10.7069 -0.5922 26 1 11.6887 -10.9308 -2.6431 27 1 11.4581 -12.5853 -0.8847 28 6 7.8758 -7.9105 -0.8240 29 6 4.4291 -3.4913 0.0026 30 1 -0.3634 0.0001 1.0276 31 1 -0.3633 0.8899 -0.5139 32 1 -0.3633 -0.8901 -0.5138 33 1 2.0558 2.1076 -0.0004 34 1 2.1864 -5.4158 -0.6606 35 1 2.9282 -5.4230 0.9999 36 1 5.4218 -4.6737 -2.5734 37 1 4.1171 -5.9776 -2.5731 38 1 9.5388 -5.8921 0.7000 39 1 9.8611 -6.1990 -1.0622 40 1 8.9443 -8.2380 1.0912 41 1 8.5987 -10.2390 0.6359 42 1 8.0670 -8.0775 -1.8840 43 1 7.0459 -8.5046 -0.4413 44 1 4.8685 -3.4841 1.0002 45 1 4.8620 -2.7421 -0.6604 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001275809441.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:48:12 Heat of formation + Delta-G solvation = 95.164232 kcal Electronic energy + Delta-G solvation = -29225.511415 eV Core-core repulsion = 25022.269650 eV Total energy + Delta-G solvation = -4203.241765 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -45.41479 -40.86292 -39.52403 -38.44908 -37.01986 -35.00401 -34.64435 -32.91916 -32.72041 -29.37763 -28.77689 -28.06525 -26.54569 -25.52907 -25.05139 -24.29186 -23.25563 -21.99390 -20.81081 -20.20292 -19.10833 -18.20912 -18.09067 -18.06073 -17.24140 -16.90551 -16.67072 -16.06920 -15.94811 -15.11662 -14.94105 -14.78373 -14.34465 -14.10006 -13.84476 -13.70637 -13.58606 -13.47928 -13.28538 -13.18747 -12.72804 -12.56229 -12.27338 -11.95943 -11.73562 -11.69783 -11.55378 -11.07040 -11.03843 -10.87975 -10.71180 -10.63558 -10.58276 -10.20770 -10.06410 -9.81277 -9.71908 -9.49114 -8.98932 -8.67442 -8.57956 -8.03033 -6.55509 -4.29125 0.83799 1.30766 2.28010 2.74899 2.79212 2.89712 3.24821 3.35854 3.37221 3.52256 3.55611 3.69508 3.97827 4.13378 4.33886 4.40988 4.46416 4.65257 4.68572 4.88351 4.97909 5.04591 5.14109 5.18497 5.24058 5.26883 5.30426 5.40325 5.44237 5.48867 5.60615 5.68945 5.75496 5.78063 5.86331 5.86940 5.98846 6.09951 6.20039 6.35619 6.39335 6.56780 7.23390 7.30212 7.57408 7.83365 7.93581 8.23046 8.31152 8.56703 8.67176 9.43683 10.83810 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.029326 B = 0.001927 C = 0.001844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.567582 B =14529.402877 C =15181.337951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.152 4.152 3 C -0.069 4.069 4 O 0.127 5.873 5 N -0.321 5.321 6 C -0.027 4.027 7 C 0.622 3.378 8 O -0.527 6.527 9 N -0.632 5.632 10 C 0.154 3.846 11 C -0.156 4.156 12 C -0.111 4.111 13 C -0.151 4.151 14 H 0.128 0.872 15 C 0.553 3.447 16 O -0.559 6.559 17 N -0.634 5.634 18 C 0.113 3.887 19 C 0.013 3.987 20 C -0.596 4.596 21 H 0.056 0.944 22 C 0.025 3.975 23 N -0.903 5.903 24 Si 1.069 2.931 25 H -0.286 1.286 26 H -0.286 1.286 27 H -0.282 1.282 28 C 0.097 3.903 29 C 0.166 3.834 30 H 0.076 0.924 31 H 0.072 0.928 32 H 0.086 0.914 33 H 0.224 0.776 34 H 0.090 0.910 35 H 0.097 0.903 36 H 0.105 0.895 37 H 0.111 0.889 38 H 0.062 0.938 39 H 0.076 0.924 40 H 0.055 0.945 41 H 0.270 0.730 42 H 0.080 0.920 43 H 0.060 0.940 44 H 0.099 0.901 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.971 18.454 -2.304 24.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.157 4.157 3 C -0.150 4.150 4 O 0.050 5.950 5 N -0.020 5.020 6 C -0.186 4.186 7 C 0.410 3.590 8 O -0.403 6.403 9 N -0.366 5.366 10 C 0.033 3.967 11 C -0.157 4.157 12 C -0.148 4.148 13 C -0.173 4.173 14 H 0.146 0.854 15 C 0.342 3.658 16 O -0.440 6.440 17 N -0.367 5.367 18 C -0.009 4.009 19 C -0.006 4.006 20 C -0.634 4.634 21 H 0.075 0.925 22 C -0.181 4.181 23 N -0.537 5.537 24 Si 0.897 3.103 25 H -0.213 1.213 26 H -0.213 1.213 27 H -0.207 1.207 28 C -0.026 4.026 29 C 0.044 3.956 30 H 0.095 0.905 31 H 0.091 0.909 32 H 0.105 0.895 33 H 0.240 0.760 34 H 0.108 0.892 35 H 0.115 0.885 36 H 0.123 0.877 37 H 0.129 0.871 38 H 0.080 0.920 39 H 0.094 0.906 40 H 0.073 0.927 41 H 0.080 0.920 42 H 0.098 0.902 43 H 0.078 0.922 44 H 0.117 0.883 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -15.007 16.980 -2.277 22.776 hybrid contribution -1.335 1.760 0.190 2.217 sum -16.342 18.741 -2.088 24.952 Atomic orbital electron populations 1.20217 0.86526 1.03866 1.03222 1.21365 0.99121 0.90024 1.05185 1.25807 0.82449 1.01320 1.05375 1.84817 1.29450 1.15316 1.65449 1.74309 1.21486 0.91442 1.14753 1.23346 0.89611 0.96700 1.08945 1.16347 0.84218 0.81702 0.76761 1.90772 1.16833 1.81459 1.51214 1.49770 1.08359 1.07094 1.71425 1.22685 0.93951 0.79044 1.01018 1.22511 0.94900 0.96315 1.01979 1.22819 1.01348 1.01684 0.88978 1.22131 0.91806 0.99083 1.04264 0.85436 1.19174 0.84965 0.83890 0.77812 1.90640 1.83972 1.19683 1.49676 1.50338 1.08747 1.12687 1.64908 1.23357 0.78570 0.99215 0.99727 1.20658 0.93344 0.90520 0.96126 1.21808 1.09514 0.93849 1.38269 0.92530 1.25889 1.01043 0.95780 0.95383 1.70826 1.11511 1.39435 1.31907 0.83530 0.74713 0.76157 0.75948 1.21278 1.21283 1.20720 1.23885 1.00254 0.77382 1.01061 1.22650 0.77195 0.94111 1.01636 0.90541 0.90949 0.89505 0.75998 0.89187 0.88516 0.87710 0.87110 0.91951 0.90552 0.92745 0.91963 0.90182 0.92150 0.88325 0.89050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.61 10.01 36.01 0.36 -0.25 16 2 C -0.15 -1.44 6.34 -104.12 -0.66 -2.10 16 3 C -0.07 -0.47 12.24 29.69 0.36 -0.11 16 4 O 0.13 1.26 11.18 17.24 0.19 1.45 16 5 N -0.32 -4.05 10.61 33.29 0.35 -3.70 16 6 C -0.03 -0.34 7.14 -82.53 -0.59 -0.93 16 7 C 0.62 8.85 8.08 -12.11 -0.10 8.75 16 8 O -0.53 -8.30 16.07 5.37 0.09 -8.22 16 9 N -0.63 -8.41 3.61 -182.62 -0.66 -9.07 16 10 C 0.15 1.74 8.85 -3.22 -0.03 1.71 16 11 C -0.16 -1.94 3.04 -155.01 -0.47 -2.41 16 12 C -0.11 -1.30 10.24 -27.00 -0.28 -1.57 16 13 C -0.15 -2.09 5.94 -92.04 -0.55 -2.63 16 14 H 0.13 1.60 8.14 -51.93 -0.42 1.18 16 15 C 0.55 10.02 7.84 -10.98 -0.09 9.93 16 16 O -0.56 -11.45 15.86 5.56 0.09 -11.36 16 17 N -0.63 -12.20 3.61 -178.40 -0.64 -12.85 16 18 C 0.11 2.29 8.39 -2.97 -0.02 2.27 16 19 C 0.01 0.29 3.10 -90.83 -0.28 0.01 16 20 C -0.60 -15.01 8.77 -34.44 -0.30 -15.31 16 21 H 0.06 1.42 7.81 -52.49 -0.41 1.01 16 22 C 0.02 0.64 5.46 -17.82 -0.10 0.54 16 23 N -0.90 -24.82 13.65 55.43 0.76 -24.06 16 24 Si 1.07 23.10 29.90 -169.99 -5.08 18.02 16 25 H -0.29 -5.98 7.11 56.52 0.40 -5.58 16 26 H -0.29 -5.92 7.11 56.52 0.40 -5.52 16 27 H -0.28 -6.19 7.11 56.52 0.40 -5.78 16 28 C 0.10 1.91 8.12 -2.96 -0.02 1.88 16 29 C 0.17 2.27 6.35 -3.21 -0.02 2.25 16 30 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.09 0.82 6.89 -51.93 -0.36 0.46 16 33 H 0.22 0.40 8.06 -52.48 -0.42 -0.03 16 34 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 35 H 0.10 0.98 8.14 -51.93 -0.42 0.55 16 36 H 0.10 1.29 8.14 -51.93 -0.42 0.87 16 37 H 0.11 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 39 H 0.08 1.51 8.09 -51.93 -0.42 1.09 16 40 H 0.05 1.31 7.61 -51.93 -0.40 0.92 16 41 H 0.27 7.29 7.04 -40.82 -0.29 7.01 16 42 H 0.08 1.59 8.09 -51.93 -0.42 1.17 16 43 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 44 H 0.10 1.44 8.01 -51.93 -0.42 1.03 16 45 H 0.09 1.34 7.57 -51.93 -0.39 0.95 16 LS Contribution 388.18 15.07 5.85 5.85 Total: -1.00 -31.98 388.18 -7.96 -39.95 By element: Atomic # 1 Polarization: 8.09 SS G_CDS: -6.12 Total: 1.96 kcal Atomic # 6 Polarization: 4.81 SS G_CDS: -2.78 Total: 2.03 kcal Atomic # 7 Polarization: -49.49 SS G_CDS: -0.19 Total: -49.68 kcal Atomic # 8 Polarization: -18.49 SS G_CDS: 0.37 Total: -18.13 kcal Atomic # 14 Polarization: 23.10 SS G_CDS: -5.08 Total: 18.02 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -31.98 -7.96 -39.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275809441.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.109 kcal (2) G-P(sol) polarization free energy of solvation -31.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.945 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds