Wall clock time and date at job start Wed Apr 1 2020 03:48:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35312 * 128.03646 * 2 1 4 4 O 1.34016 * 106.66920 * 179.97438 * 3 2 1 5 5 N 1.20906 * 111.84547 * 359.70730 * 4 3 2 6 6 C 1.30985 * 111.43744 * 0.48261 * 5 4 3 7 7 C 1.48330 * 126.93917 * 179.79826 * 6 5 4 8 8 O 1.21497 * 120.00357 * 179.68598 * 7 6 5 9 9 N 1.34772 * 119.99851 * 359.68973 * 7 6 5 10 10 C 1.47728 * 134.39664 * 179.97438 * 9 7 6 11 11 C 1.53294 * 85.85812 * 155.92443 * 10 9 7 12 12 C 1.52327 * 128.81740 * 243.38170 * 11 10 9 13 13 C 1.52317 * 128.81912 * 163.01638 * 11 10 9 14 14 H 1.09002 * 117.51638 * 10.40781 * 13 11 10 15 15 C 1.50699 * 117.51816 * 225.33630 * 13 11 10 16 16 O 1.21280 * 120.00081 * 359.97438 * 15 13 11 17 17 N 1.34781 * 120.00312 * 179.97438 * 15 13 11 18 18 C 1.47580 * 134.49134 * 179.97438 * 17 15 13 19 19 C 1.53952 * 86.11500 * 155.36347 * 18 17 15 20 20 C 1.50695 * 113.74060 * 137.95290 * 19 18 17 21 21 H 1.07995 * 120.00496 * 0.02562 * 20 19 18 22 22 C 1.37880 * 119.99572 * 180.02562 * 20 19 18 23 23 N 1.31511 * 120.00327 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 119.99951 * 180.02562 * 22 20 19 25 25 H 1.48506 * 109.47297 * 59.99744 * 24 22 20 26 26 H 1.48503 * 109.47261 * 299.99924 * 24 22 20 27 27 H 1.48500 * 109.47454 * 179.97438 * 24 22 20 28 28 C 1.47578 * 134.49101 * 0.02562 * 17 15 13 29 29 C 1.47730 * 134.39516 * 0.02562 * 9 7 6 30 30 H 1.09000 * 109.47435 * 270.00494 * 1 2 3 31 31 H 1.09002 * 109.47139 * 30.00622 * 1 2 3 32 32 H 1.09003 * 109.46767 * 150.00664 * 1 2 3 33 33 H 1.08007 * 126.66615 * 359.97438 * 3 2 1 34 34 H 1.09003 * 113.80602 * 41.69107 * 10 9 7 35 35 H 1.08992 * 113.81434 * 270.15832 * 10 9 7 36 36 H 1.09003 * 117.51441 * 134.66395 * 12 11 10 37 37 H 1.08997 * 117.51669 * 349.53940 * 12 11 10 38 38 H 1.08998 * 113.77108 * 41.06531 * 18 17 15 39 39 H 1.08991 * 113.87349 * 269.67144 * 18 17 15 40 40 H 1.08997 * 113.74240 * 269.15892 * 19 18 17 41 41 H 0.97006 * 119.99995 * 359.97438 * 23 22 20 42 42 H 1.08997 * 113.77175 * 90.33932 * 28 17 15 43 43 H 1.09004 * 113.76848 * 318.93948 * 28 17 15 44 44 H 1.09005 * 113.81110 * 89.84176 * 29 9 7 45 45 H 1.09003 * 113.80855 * 318.31190 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3408 1.0657 0.0000 4 8 3.5888 0.5775 0.0006 5 7 3.5989 -0.6315 0.0066 6 6 2.3837 -1.1205 0.0007 7 6 1.9993 -2.5531 0.0009 8 8 0.8256 -2.8672 0.0007 9 7 2.9519 -3.5064 0.0016 10 6 2.9358 -4.9836 0.0025 11 6 4.3329 -4.8885 -0.6212 12 6 4.7997 -5.3558 -1.9938 13 6 5.4070 -5.9633 -0.7260 14 1 5.1241 -6.9846 -0.4706 15 6 6.8194 -5.5729 -0.3744 16 8 7.0656 -4.4381 -0.0243 17 7 7.8092 -6.4847 -0.4490 18 6 9.2618 -6.4580 -0.1895 19 6 9.1405 -7.9736 0.0522 20 6 10.2607 -8.7766 -0.5570 21 1 11.0486 -8.2778 -1.1016 22 6 10.2796 -10.1484 -0.4191 23 7 9.3198 -10.7560 0.2437 24 14 11.6685 -11.1439 -1.1735 25 1 12.9633 -10.7069 -0.5922 26 1 11.6887 -10.9308 -2.6431 27 1 11.4581 -12.5853 -0.8847 28 6 7.8758 -7.9105 -0.8240 29 6 4.4291 -3.4913 0.0026 30 1 -0.3634 0.0001 1.0276 31 1 -0.3633 0.8899 -0.5139 32 1 -0.3633 -0.8901 -0.5138 33 1 2.0558 2.1076 -0.0004 34 1 2.1864 -5.4158 -0.6606 35 1 2.9282 -5.4230 0.9999 36 1 5.4218 -4.6737 -2.5734 37 1 4.1171 -5.9776 -2.5731 38 1 9.5388 -5.8921 0.7000 39 1 9.8611 -6.1990 -1.0622 40 1 8.9443 -8.2380 1.0912 41 1 8.5987 -10.2390 0.6359 42 1 8.0670 -8.0775 -1.8840 43 1 7.0459 -8.5046 -0.4413 44 1 4.8685 -3.4841 1.0002 45 1 4.8620 -2.7421 -0.6604 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001275809441.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:48:11 Heat of formation + Delta-G solvation = 75.709432 kcal Electronic energy + Delta-G solvation = -29226.355038 eV Core-core repulsion = 25022.269650 eV Total energy + Delta-G solvation = -4204.085389 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -46.21630 -41.97939 -40.94198 -39.67710 -38.49631 -35.76169 -35.75113 -34.84071 -33.50950 -30.93958 -29.70991 -28.87814 -27.56648 -27.13693 -26.83980 -25.18516 -24.63057 -22.72073 -22.29007 -21.28207 -20.21101 -19.52834 -19.03763 -18.95611 -18.92254 -18.13985 -17.87404 -17.21493 -16.98480 -16.61725 -16.40390 -15.88507 -15.58051 -15.32106 -15.12833 -14.83456 -14.65600 -14.32563 -14.22201 -14.12353 -14.01126 -13.64555 -13.49100 -13.38262 -13.28827 -13.14973 -12.79712 -12.45081 -12.43703 -12.13612 -11.90486 -11.87930 -11.63133 -11.46359 -11.45250 -11.11882 -11.06474 -10.54907 -10.46153 -10.44484 -10.03298 -9.64290 -8.59745 -6.33229 -0.01498 0.65149 1.26144 1.46232 1.62151 1.67280 1.80026 1.86783 1.90973 2.20315 2.56741 2.62027 2.70604 2.90769 3.18545 3.26905 3.34247 3.53889 3.72478 3.75415 3.99315 4.02562 4.09597 4.21198 4.27370 4.30966 4.35275 4.41195 4.43795 4.51184 4.54972 4.63860 4.67817 4.69498 4.73812 4.74006 4.76770 4.77573 4.81765 4.91039 5.00169 5.28369 5.40781 6.01935 6.20697 6.25031 6.59999 6.62811 6.80460 7.01913 7.08929 7.45943 8.80832 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.029326 B = 0.001927 C = 0.001844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.567582 B =14529.402877 C =15181.337951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C -0.172 4.172 3 C -0.037 4.037 4 O 0.129 5.871 5 N -0.351 5.351 6 C -0.059 4.059 7 C 0.616 3.384 8 O -0.550 6.550 9 N -0.635 5.635 10 C 0.157 3.843 11 C -0.151 4.151 12 C -0.093 4.093 13 C -0.159 4.159 14 H 0.146 0.854 15 C 0.548 3.452 16 O -0.586 6.586 17 N -0.636 5.636 18 C 0.116 3.884 19 C -0.001 4.001 20 C -0.603 4.603 21 H 0.055 0.945 22 C -0.021 4.021 23 N -0.930 5.930 24 Si 1.112 2.888 25 H -0.275 1.275 26 H -0.269 1.269 27 H -0.288 1.288 28 C 0.115 3.885 29 C 0.168 3.832 30 H 0.080 0.920 31 H 0.105 0.895 32 H 0.061 0.939 33 H 0.279 0.721 34 H 0.108 0.892 35 H 0.108 0.892 36 H 0.098 0.902 37 H 0.144 0.856 38 H 0.061 0.939 39 H 0.081 0.919 40 H 0.032 0.968 41 H 0.261 0.739 42 H 0.082 0.918 43 H 0.071 0.929 44 H 0.083 0.917 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.052 19.678 -3.531 26.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.177 4.177 3 C -0.117 4.117 4 O 0.051 5.949 5 N -0.050 5.050 6 C -0.216 4.216 7 C 0.404 3.596 8 O -0.428 6.428 9 N -0.369 5.369 10 C 0.037 3.963 11 C -0.153 4.153 12 C -0.130 4.130 13 C -0.181 4.181 14 H 0.164 0.836 15 C 0.340 3.660 16 O -0.468 6.468 17 N -0.369 5.369 18 C -0.006 4.006 19 C -0.020 4.020 20 C -0.641 4.641 21 H 0.073 0.927 22 C -0.221 4.221 23 N -0.565 5.565 24 Si 0.934 3.066 25 H -0.201 1.201 26 H -0.194 1.194 27 H -0.214 1.214 28 C -0.007 4.007 29 C 0.046 3.954 30 H 0.098 0.902 31 H 0.124 0.876 32 H 0.080 0.920 33 H 0.294 0.706 34 H 0.126 0.874 35 H 0.126 0.874 36 H 0.116 0.884 37 H 0.162 0.838 38 H 0.079 0.921 39 H 0.100 0.900 40 H 0.050 0.950 41 H 0.071 0.929 42 H 0.100 0.900 43 H 0.090 0.910 44 H 0.102 0.898 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -16.087 18.205 -3.509 24.546 hybrid contribution -0.981 1.557 0.623 1.943 sum -17.068 19.762 -2.886 26.272 Atomic orbital electron populations 1.20228 0.85305 1.04229 1.03565 1.21725 1.00133 0.89652 1.06196 1.26753 0.80380 1.02833 1.01717 1.84772 1.31099 1.14409 1.64663 1.74318 1.21911 0.92634 1.16152 1.23479 0.90723 0.96743 1.10686 1.16664 0.84030 0.82578 0.76288 1.90743 1.17519 1.82065 1.52445 1.49858 1.07945 1.08029 1.71054 1.22841 0.93413 0.78071 1.01990 1.22525 0.95041 0.94922 1.02788 1.22993 1.00697 1.00969 0.88337 1.22075 0.89149 1.00265 1.06563 0.83644 1.19891 0.86248 0.83194 0.76707 1.90631 1.84680 1.20830 1.50701 1.50296 1.08485 1.12754 1.65352 1.23222 0.79868 0.97614 0.99917 1.20616 0.94402 0.91746 0.95281 1.22101 1.10062 0.94234 1.37737 0.92713 1.27107 1.02342 0.97293 0.95320 1.70927 1.12339 1.39572 1.33710 0.82967 0.72773 0.74497 0.76323 1.20099 1.19426 1.21388 1.23574 0.98979 0.77749 1.00425 1.22468 0.77515 0.94756 1.00676 0.90188 0.87615 0.92036 0.70608 0.87434 0.87371 0.88372 0.83810 0.92075 0.90043 0.95018 0.92885 0.89961 0.91024 0.89845 0.90400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.03 10.01 71.24 0.71 -0.31 16 2 C -0.17 -3.01 6.34 -19.54 -0.12 -3.13 16 3 C -0.04 -0.40 12.24 67.14 0.82 0.42 16 4 O 0.13 2.39 11.18 71.88 0.80 3.20 16 5 N -0.35 -8.93 10.61 -49.52 -0.53 -9.46 16 6 C -0.06 -1.50 7.14 42.96 0.31 -1.20 16 7 C 0.62 17.79 8.08 86.93 0.70 18.49 16 8 O -0.55 -17.57 16.07 -3.71 -0.06 -17.63 16 9 N -0.63 -16.92 3.61 -849.99 -3.07 -19.99 16 10 C 0.16 3.34 8.85 86.24 0.76 4.10 16 11 C -0.15 -3.61 3.04 -52.39 -0.16 -3.77 16 12 C -0.09 -1.97 10.24 30.42 0.31 -1.66 16 13 C -0.16 -4.15 5.94 -11.72 -0.07 -4.22 16 14 H 0.15 3.31 8.14 -2.39 -0.02 3.29 16 15 C 0.55 19.66 7.84 87.66 0.69 20.35 16 16 O -0.59 -24.23 15.86 -3.03 -0.05 -24.28 16 17 N -0.64 -24.27 3.61 -836.73 -3.02 -27.29 16 18 C 0.12 4.73 8.39 86.48 0.73 5.46 16 19 C 0.00 -0.05 3.10 -10.87 -0.03 -0.09 16 20 C -0.60 -30.42 8.77 25.60 0.22 -30.19 16 21 H 0.05 2.72 7.81 -2.91 -0.02 2.70 16 22 C -0.02 -1.07 5.46 84.66 0.46 -0.61 16 23 N -0.93 -51.53 13.65 21.45 0.29 -51.23 16 24 Si 1.11 46.01 29.90 68.60 2.05 48.06 16 25 H -0.28 -10.81 7.11 99.48 0.71 -10.10 16 26 H -0.27 -10.30 7.11 99.48 0.71 -9.60 16 27 H -0.29 -12.15 7.11 99.48 0.71 -11.45 16 28 C 0.12 4.48 8.12 86.49 0.70 5.18 16 29 C 0.17 4.69 6.35 86.25 0.55 5.24 16 30 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.11 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.06 1.16 6.89 -2.39 -0.02 1.14 16 33 H 0.28 -0.47 8.06 -2.91 -0.02 -0.50 16 34 H 0.11 1.93 8.14 -2.39 -0.02 1.91 16 35 H 0.11 2.04 8.14 -2.39 -0.02 2.02 16 36 H 0.10 2.26 8.14 -2.39 -0.02 2.24 16 37 H 0.14 2.14 8.14 -2.39 -0.02 2.12 16 38 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 39 H 0.08 3.22 8.09 -2.39 -0.02 3.20 16 40 H 0.03 1.58 7.61 -2.39 -0.02 1.56 16 41 H 0.26 14.40 7.04 -92.70 -0.65 13.74 16 42 H 0.08 3.18 8.09 -2.39 -0.02 3.16 16 43 H 0.07 2.62 8.14 -2.38 -0.02 2.60 16 44 H 0.08 2.56 8.01 -2.38 -0.02 2.54 16 45 H 0.08 2.37 7.57 -2.39 -0.02 2.36 16 Total: -1.00 -71.69 388.18 4.15 -67.54 By element: Atomic # 1 Polarization: 15.87 SS G_CDS: 1.14 Total: 17.01 kcal Atomic # 6 Polarization: 7.49 SS G_CDS: 6.58 Total: 14.07 kcal Atomic # 7 Polarization: -101.65 SS G_CDS: -6.32 Total: -107.97 kcal Atomic # 8 Polarization: -39.41 SS G_CDS: 0.70 Total: -38.71 kcal Atomic # 14 Polarization: 46.01 SS G_CDS: 2.05 Total: 48.06 kcal Total: -71.69 4.15 -67.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275809441.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.252 kcal (2) G-P(sol) polarization free energy of solvation -71.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.543 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds