Wall clock time and date at job start Wed Apr 1 2020 03:39:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.34255 * 126.52684 * 2 1 4 4 C 1.34051 * 108.22961 * 179.97438 * 3 2 1 5 5 N 1.29930 * 109.23764 * 359.72169 * 4 3 2 6 6 C 1.36060 * 108.48449 * 0.44482 * 5 4 3 7 7 C 1.47417 * 126.45314 * 179.82230 * 6 5 4 8 8 O 1.21619 * 120.00134 * 179.68726 * 7 6 5 9 9 N 1.34771 * 120.00082 * 359.69059 * 7 6 5 10 10 C 1.47250 * 135.89782 * 359.62988 * 9 7 6 11 11 C 1.52619 * 87.69598 * 153.99096 * 10 9 7 12 12 C 1.52090 * 129.80973 * 164.42804 * 11 10 9 13 13 C 1.52093 * 129.80621 * 246.36787 * 11 10 9 14 14 H 1.08997 * 117.52275 * 348.34577 * 13 11 10 15 15 C 1.50697 * 117.52530 * 133.45190 * 13 11 10 16 16 O 1.21286 * 119.99952 * 0.02562 * 15 13 11 17 17 N 1.34777 * 120.00302 * 179.97438 * 15 13 11 18 18 C 1.47070 * 136.05470 * 359.63711 * 17 15 13 19 19 C 1.53761 * 87.88593 * 152.95978 * 18 17 15 20 20 C 1.50701 * 114.26467 * 139.79145 * 19 18 17 21 21 H 1.08000 * 119.99971 * 266.47350 * 20 19 18 22 22 C 1.37877 * 119.99692 * 86.47161 * 20 19 18 23 23 N 1.31511 * 120.00660 * 0.02562 * 22 20 19 24 24 Si 1.86805 * 119.99688 * 179.97438 * 22 20 19 25 25 H 1.48505 * 109.46738 * 60.00025 * 24 22 20 26 26 H 1.48495 * 109.47088 * 179.97438 * 24 22 20 27 27 H 1.48501 * 109.47017 * 300.00534 * 24 22 20 28 28 C 1.47067 * 136.05867 * 179.97438 * 17 15 13 29 29 C 1.47256 * 135.90231 * 179.97438 * 9 7 6 30 30 H 1.09001 * 109.47501 * 270.02465 * 1 2 3 31 31 H 1.09002 * 109.47407 * 30.01982 * 1 2 3 32 32 H 1.09003 * 109.47549 * 150.02450 * 1 2 3 33 33 H 1.08000 * 125.37911 * 180.02562 * 4 3 2 34 34 H 1.09002 * 113.51561 * 268.69017 * 10 9 7 35 35 H 1.08997 * 113.51740 * 39.28912 * 10 9 7 36 36 H 1.09003 * 117.52234 * 226.48373 * 12 11 10 37 37 H 1.08995 * 117.52282 * 11.65077 * 12 11 10 38 38 H 1.09000 * 113.46268 * 267.68767 * 18 17 15 39 39 H 1.09000 * 113.46634 * 38.12914 * 18 17 15 40 40 H 1.08997 * 114.39114 * 272.67552 * 19 18 17 41 41 H 0.96995 * 120.00327 * 180.02562 * 23 22 20 42 42 H 1.09001 * 113.47214 * 321.87516 * 28 17 15 43 43 H 1.09000 * 113.46366 * 92.30717 * 28 17 15 44 44 H 1.09005 * 113.51269 * 320.71801 * 29 9 7 45 45 H 1.08997 * 113.51400 * 91.23562 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3060 1.0788 0.0000 4 6 3.5788 0.6580 0.0006 5 7 3.6001 -0.6411 0.0069 6 6 2.3170 -1.0936 0.0006 7 6 1.8853 -2.5032 0.0007 8 8 0.7002 -2.7763 0.0004 9 7 2.8040 -3.4893 0.0013 10 6 4.2746 -3.5645 -0.0047 11 6 4.1462 -4.9269 0.6710 12 6 5.1772 -6.0328 0.8363 13 6 4.5590 -5.3637 2.0681 14 1 5.1896 -4.6849 2.6423 15 6 3.5645 -6.1625 2.8704 16 8 2.4817 -6.4344 2.3964 17 7 3.8785 -6.5757 4.1142 18 6 5.0428 -6.4618 5.0055 19 6 4.0743 -6.5875 6.1931 20 6 4.5881 -7.4415 7.3235 21 1 4.3383 -8.4914 7.3638 22 6 5.3772 -6.8824 8.3062 23 7 5.6811 -5.6038 8.2575 24 14 6.0136 -7.9408 9.7078 25 1 6.8486 -9.0393 9.1588 26 1 6.8326 -7.1079 10.6246 27 1 4.8659 -8.5168 10.4536 28 6 3.2100 -7.3440 5.1752 29 6 2.7751 -4.9616 0.0022 30 1 -0.3634 0.0004 1.0276 31 1 -0.3634 0.8898 -0.5141 32 1 -0.3634 -0.8902 -0.5135 33 1 4.4489 1.2977 0.0011 34 1 4.7034 -3.6141 -1.0055 35 1 4.7511 -2.8112 0.6227 36 1 4.8645 -7.0514 0.6063 37 1 6.2142 -5.7940 0.6005 38 1 5.7372 -7.2978 4.9214 39 1 5.5395 -5.4932 4.9491 40 1 3.6466 -5.6423 6.5272 41 1 6.2366 -5.2106 8.9486 42 1 2.1455 -7.1270 5.2634 43 1 3.4209 -8.4127 5.1358 44 1 1.9929 -5.3808 0.6352 45 1 2.7881 -5.3973 -0.9968 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001276486090.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:39:22 Heat of formation + Delta-G solvation = 67.625069 kcal Electronic energy + Delta-G solvation = -29510.616668 eV Core-core repulsion = 25306.180715 eV Total energy + Delta-G solvation = -4204.435953 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.70085 -40.77742 -39.34976 -38.29411 -36.90730 -35.11345 -34.47335 -32.70468 -32.65026 -29.53736 -28.79390 -27.06938 -26.13813 -25.56528 -24.98039 -23.77668 -23.20718 -22.04105 -20.56473 -20.06954 -18.98958 -17.94691 -17.83151 -17.17752 -16.94246 -16.63195 -16.40620 -15.77891 -15.72083 -15.10283 -15.02776 -14.81156 -14.43147 -14.16802 -13.96584 -13.79451 -13.33548 -13.20955 -13.10223 -12.86124 -12.70627 -12.40944 -12.21020 -11.92473 -11.61881 -11.53827 -11.34296 -11.10141 -10.96188 -10.90673 -10.78487 -10.57417 -10.37266 -10.32554 -9.92883 -9.58278 -9.24227 -9.21971 -8.98544 -8.68185 -8.59710 -7.87494 -6.19993 -4.25839 0.85119 1.80919 2.25692 2.66937 2.89550 3.16660 3.23999 3.29555 3.30738 3.38697 3.71335 3.91026 4.17218 4.30894 4.33072 4.38630 4.46715 4.82876 4.89156 5.07293 5.08747 5.18276 5.19549 5.24666 5.34785 5.46570 5.53404 5.55284 5.61207 5.65969 5.76388 5.79732 5.91308 5.95079 6.05766 6.08096 6.19261 6.25428 6.43356 6.55688 6.64622 6.79689 7.16975 7.53637 7.61885 7.77669 8.03190 8.16102 8.50803 8.74969 8.78177 9.41040 10.89707 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.013899 B = 0.002346 C = 0.002208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2014.025204 B =11932.356858 C =12680.661050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.044 3.956 3 O -0.201 6.201 4 C 0.172 3.828 5 N -0.459 5.459 6 C -0.071 4.071 7 C 0.631 3.369 8 O -0.534 6.534 9 N -0.626 5.626 10 C 0.153 3.847 11 C -0.158 4.158 12 C -0.118 4.118 13 C -0.138 4.138 14 H 0.126 0.874 15 C 0.560 3.440 16 O -0.560 6.560 17 N -0.638 5.638 18 C 0.099 3.901 19 C 0.035 3.965 20 C -0.518 4.518 21 H 0.063 0.937 22 C 0.069 3.931 23 N -0.886 5.886 24 Si 0.896 3.104 25 H -0.275 1.275 26 H -0.287 1.287 27 H -0.275 1.275 28 C 0.100 3.900 29 C 0.142 3.858 30 H 0.094 0.906 31 H 0.080 0.920 32 H 0.112 0.888 33 H 0.255 0.745 34 H 0.092 0.908 35 H 0.090 0.910 36 H 0.105 0.895 37 H 0.111 0.889 38 H 0.075 0.925 39 H 0.059 0.941 40 H 0.068 0.932 41 H 0.265 0.735 42 H 0.057 0.943 43 H 0.074 0.926 44 H 0.109 0.891 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.173 11.012 -18.837 21.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.013 4.013 3 O -0.087 6.087 4 C -0.057 4.057 5 N -0.188 5.188 6 C -0.190 4.190 7 C 0.420 3.580 8 O -0.412 6.412 9 N -0.359 5.359 10 C 0.030 3.970 11 C -0.159 4.159 12 C -0.156 4.156 13 C -0.159 4.159 14 H 0.144 0.856 15 C 0.349 3.651 16 O -0.441 6.441 17 N -0.371 5.371 18 C -0.023 4.023 19 C 0.016 3.984 20 C -0.556 4.556 21 H 0.081 0.919 22 C -0.135 4.135 23 N -0.523 5.523 24 Si 0.723 3.277 25 H -0.200 1.200 26 H -0.212 1.212 27 H -0.200 1.200 28 C -0.022 4.022 29 C 0.020 3.980 30 H 0.112 0.888 31 H 0.099 0.901 32 H 0.130 0.870 33 H 0.271 0.729 34 H 0.110 0.890 35 H 0.108 0.892 36 H 0.123 0.877 37 H 0.129 0.871 38 H 0.093 0.907 39 H 0.078 0.922 40 H 0.086 0.914 41 H 0.074 0.926 42 H 0.075 0.925 43 H 0.092 0.908 44 H 0.127 0.873 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -0.958 10.765 -19.177 22.013 hybrid contribution 0.408 0.136 0.836 0.940 sum -0.550 10.901 -18.341 21.343 Atomic orbital electron populations 1.20617 0.82515 1.05339 1.04936 1.23751 0.95233 0.83276 0.99041 1.84377 1.18624 1.36216 1.69482 1.28034 0.85256 0.91272 1.01088 1.70762 1.21755 1.09984 1.16294 1.21356 0.88895 0.95146 1.13631 1.16033 0.84038 0.81496 0.76418 1.90800 1.15587 1.82802 1.51989 1.49062 1.08007 1.07294 1.71552 1.22425 0.80575 0.93843 1.00163 1.21922 0.97938 0.97284 0.98780 1.22769 0.97733 0.97262 0.97878 1.21968 1.01516 1.02848 0.89594 0.85629 1.19030 0.86813 0.79705 0.79524 1.90586 1.24391 1.59552 1.69539 1.49938 1.21541 1.52963 1.12645 1.23669 0.90409 1.00297 0.87969 1.20384 0.90950 0.96781 0.90316 1.20870 1.31775 0.95530 1.07427 0.91861 1.25028 0.95806 0.94937 0.97729 1.69938 1.36637 1.11126 1.34571 0.86591 0.79004 0.80237 0.81818 1.20042 1.21222 1.20033 1.23348 0.98030 0.96301 0.84475 1.22581 0.96605 0.78607 1.00167 0.88793 0.90083 0.86957 0.72933 0.89008 0.89197 0.87675 0.87114 0.90670 0.92247 0.91407 0.92560 0.92474 0.90824 0.87274 0.89402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.69 9.88 36.00 0.36 -0.34 16 2 C 0.04 0.49 7.44 -35.08 -0.26 0.23 16 3 O -0.20 -1.93 10.73 6.51 0.07 -1.86 16 4 C 0.17 1.41 13.19 51.96 0.69 2.09 16 5 N -0.46 -5.37 9.86 -11.49 -0.11 -5.48 16 6 C -0.07 -0.95 6.96 -83.02 -0.58 -1.53 16 7 C 0.63 10.04 8.06 -12.53 -0.10 9.94 16 8 O -0.53 -9.61 15.57 5.26 0.08 -9.53 16 9 N -0.63 -9.21 3.69 -185.77 -0.69 -9.90 16 10 C 0.15 1.77 7.78 -7.62 -0.06 1.71 16 11 C -0.16 -2.04 3.14 -155.84 -0.49 -2.52 16 12 C -0.12 -1.33 10.24 -27.09 -0.28 -1.60 16 13 C -0.14 -2.07 6.02 -92.13 -0.55 -2.63 16 14 H 0.13 1.80 8.14 -51.93 -0.42 1.38 16 15 C 0.56 10.90 7.87 -10.99 -0.09 10.81 16 16 O -0.56 -12.29 15.03 5.55 0.08 -12.20 16 17 N -0.64 -12.99 3.69 -185.04 -0.68 -13.67 16 18 C 0.10 2.05 8.00 -8.36 -0.07 1.98 16 19 C 0.03 0.82 3.79 -91.13 -0.35 0.47 16 20 C -0.52 -13.09 8.83 -34.44 -0.30 -13.39 16 21 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 22 C 0.07 1.77 5.46 -17.82 -0.10 1.67 16 23 N -0.89 -23.97 13.26 55.43 0.74 -23.23 16 24 Si 0.90 19.90 29.54 -169.99 -5.02 14.88 16 25 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 26 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 27 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 28 C 0.10 2.11 8.17 -8.51 -0.07 2.04 16 29 C 0.14 2.03 8.21 -7.63 -0.06 1.97 16 30 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.11 1.15 6.48 -51.93 -0.34 0.81 16 33 H 0.26 0.69 8.06 -52.49 -0.42 0.27 16 34 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.09 1.06 7.48 -51.93 -0.39 0.68 16 36 H 0.10 1.19 8.14 -51.93 -0.42 0.77 16 37 H 0.11 0.94 8.14 -51.93 -0.42 0.51 16 38 H 0.08 1.51 8.10 -51.93 -0.42 1.09 16 39 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 40 H 0.07 1.75 8.11 -51.93 -0.42 1.33 16 41 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 42 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 43 H 0.07 1.47 8.10 -51.93 -0.42 1.05 16 44 H 0.11 1.96 5.98 -51.93 -0.31 1.65 16 45 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 387.42 15.07 5.84 5.84 Total: -1.00 -33.18 387.42 -8.08 -41.25 By element: Atomic # 1 Polarization: 9.06 SS G_CDS: -6.07 Total: 2.99 kcal Atomic # 6 Polarization: 13.22 SS G_CDS: -2.31 Total: 10.91 kcal Atomic # 7 Polarization: -51.53 SS G_CDS: -0.75 Total: -52.28 kcal Atomic # 8 Polarization: -23.82 SS G_CDS: 0.24 Total: -23.59 kcal Atomic # 14 Polarization: 19.90 SS G_CDS: -5.02 Total: 14.88 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -33.18 -8.08 -41.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276486090.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.876 kcal (2) G-P(sol) polarization free energy of solvation -33.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.251 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds