Wall clock time and date at job start Wed Apr 1 2020 03:39:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.34255 * 126.52684 * 2 1 4 4 C 1.34051 * 108.22961 * 179.97438 * 3 2 1 5 5 N 1.29930 * 109.23764 * 359.72169 * 4 3 2 6 6 C 1.36060 * 108.48449 * 0.44482 * 5 4 3 7 7 C 1.47417 * 126.45314 * 179.82230 * 6 5 4 8 8 O 1.21619 * 120.00134 * 179.68726 * 7 6 5 9 9 N 1.34771 * 120.00082 * 359.69059 * 7 6 5 10 10 C 1.47250 * 135.89782 * 359.62988 * 9 7 6 11 11 C 1.52619 * 87.69598 * 153.99096 * 10 9 7 12 12 C 1.52090 * 129.80973 * 164.42804 * 11 10 9 13 13 C 1.52093 * 129.80621 * 246.36787 * 11 10 9 14 14 H 1.08997 * 117.52275 * 348.34577 * 13 11 10 15 15 C 1.50697 * 117.52530 * 133.45190 * 13 11 10 16 16 O 1.21286 * 119.99952 * 0.02562 * 15 13 11 17 17 N 1.34777 * 120.00302 * 179.97438 * 15 13 11 18 18 C 1.47070 * 136.05470 * 359.63711 * 17 15 13 19 19 C 1.53761 * 87.88593 * 152.95978 * 18 17 15 20 20 C 1.50701 * 114.26467 * 139.79145 * 19 18 17 21 21 H 1.08000 * 119.99971 * 266.47350 * 20 19 18 22 22 C 1.37877 * 119.99692 * 86.47161 * 20 19 18 23 23 N 1.31511 * 120.00660 * 0.02562 * 22 20 19 24 24 Si 1.86805 * 119.99688 * 179.97438 * 22 20 19 25 25 H 1.48505 * 109.46738 * 60.00025 * 24 22 20 26 26 H 1.48495 * 109.47088 * 179.97438 * 24 22 20 27 27 H 1.48501 * 109.47017 * 300.00534 * 24 22 20 28 28 C 1.47067 * 136.05867 * 179.97438 * 17 15 13 29 29 C 1.47256 * 135.90231 * 179.97438 * 9 7 6 30 30 H 1.09001 * 109.47501 * 270.02465 * 1 2 3 31 31 H 1.09002 * 109.47407 * 30.01982 * 1 2 3 32 32 H 1.09003 * 109.47549 * 150.02450 * 1 2 3 33 33 H 1.08000 * 125.37911 * 180.02562 * 4 3 2 34 34 H 1.09002 * 113.51561 * 268.69017 * 10 9 7 35 35 H 1.08997 * 113.51740 * 39.28912 * 10 9 7 36 36 H 1.09003 * 117.52234 * 226.48373 * 12 11 10 37 37 H 1.08995 * 117.52282 * 11.65077 * 12 11 10 38 38 H 1.09000 * 113.46268 * 267.68767 * 18 17 15 39 39 H 1.09000 * 113.46634 * 38.12914 * 18 17 15 40 40 H 1.08997 * 114.39114 * 272.67552 * 19 18 17 41 41 H 0.96995 * 120.00327 * 180.02562 * 23 22 20 42 42 H 1.09001 * 113.47214 * 321.87516 * 28 17 15 43 43 H 1.09000 * 113.46366 * 92.30717 * 28 17 15 44 44 H 1.09005 * 113.51269 * 320.71801 * 29 9 7 45 45 H 1.08997 * 113.51400 * 91.23562 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3060 1.0788 0.0000 4 6 3.5788 0.6580 0.0006 5 7 3.6001 -0.6411 0.0069 6 6 2.3170 -1.0936 0.0006 7 6 1.8853 -2.5032 0.0007 8 8 0.7002 -2.7763 0.0004 9 7 2.8040 -3.4893 0.0013 10 6 4.2746 -3.5645 -0.0047 11 6 4.1462 -4.9269 0.6710 12 6 5.1772 -6.0328 0.8363 13 6 4.5590 -5.3637 2.0681 14 1 5.1896 -4.6849 2.6423 15 6 3.5645 -6.1625 2.8704 16 8 2.4817 -6.4344 2.3964 17 7 3.8785 -6.5757 4.1142 18 6 5.0428 -6.4618 5.0055 19 6 4.0743 -6.5875 6.1931 20 6 4.5881 -7.4415 7.3235 21 1 4.3383 -8.4914 7.3638 22 6 5.3772 -6.8824 8.3062 23 7 5.6811 -5.6038 8.2575 24 14 6.0136 -7.9408 9.7078 25 1 6.8486 -9.0393 9.1588 26 1 6.8326 -7.1079 10.6246 27 1 4.8659 -8.5168 10.4536 28 6 3.2100 -7.3440 5.1752 29 6 2.7751 -4.9616 0.0022 30 1 -0.3634 0.0004 1.0276 31 1 -0.3634 0.8898 -0.5141 32 1 -0.3634 -0.8902 -0.5135 33 1 4.4489 1.2977 0.0011 34 1 4.7034 -3.6141 -1.0055 35 1 4.7511 -2.8112 0.6227 36 1 4.8645 -7.0514 0.6063 37 1 6.2142 -5.7940 0.6005 38 1 5.7372 -7.2978 4.9214 39 1 5.5395 -5.4932 4.9491 40 1 3.6466 -5.6423 6.5272 41 1 6.2366 -5.2106 8.9486 42 1 2.1455 -7.1270 5.2634 43 1 3.4209 -8.4127 5.1358 44 1 1.9929 -5.3808 0.6352 45 1 2.7881 -5.3973 -0.9968 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001276486090.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:39:21 Heat of formation + Delta-G solvation = 44.128761 kcal Electronic energy + Delta-G solvation = -29511.635545 eV Core-core repulsion = 25306.180715 eV Total energy + Delta-G solvation = -4205.454829 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -44.47756 -41.94608 -40.86268 -39.58510 -38.45667 -35.98188 -35.58102 -34.64935 -33.43356 -31.16644 -29.93517 -27.97638 -27.30021 -27.13916 -26.70848 -24.73380 -24.46892 -22.83603 -22.05918 -21.18146 -20.22488 -19.32810 -18.82172 -18.72397 -18.09581 -17.97573 -17.52922 -16.88499 -16.80056 -16.63900 -16.42889 -16.12258 -15.77680 -15.41380 -14.98339 -14.86338 -14.66975 -14.37288 -14.17219 -14.03768 -13.98281 -13.43705 -13.39249 -13.27343 -13.21375 -13.14234 -12.72751 -12.62091 -12.46821 -12.19516 -12.00542 -11.90915 -11.63918 -11.44306 -11.35974 -11.08248 -10.98441 -10.64584 -10.49704 -10.13447 -9.75576 -9.55074 -8.16765 -6.28388 -0.02656 1.01587 1.43077 1.47590 1.49167 1.50365 1.57639 1.74626 1.90611 2.11578 2.45913 2.74724 2.98149 3.03860 3.13661 3.33754 3.54930 3.58264 3.69250 3.87358 4.18603 4.19372 4.23362 4.29797 4.36464 4.39327 4.49095 4.50438 4.52082 4.58991 4.67722 4.70060 4.78233 4.80604 4.82333 4.85293 4.92299 4.95134 5.00530 5.04604 5.12473 5.18866 5.58034 5.80280 6.22119 6.38313 6.54074 6.79969 6.90358 6.90755 7.16412 7.41749 8.93131 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.013899 B = 0.002346 C = 0.002208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2014.025204 B =11932.356858 C =12680.661050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.045 3.955 3 O -0.197 6.197 4 C 0.196 3.804 5 N -0.487 5.487 6 C -0.102 4.102 7 C 0.617 3.383 8 O -0.573 6.573 9 N -0.637 5.637 10 C 0.166 3.834 11 C -0.154 4.154 12 C -0.079 4.079 13 C -0.166 4.166 14 H 0.133 0.867 15 C 0.552 3.448 16 O -0.591 6.591 17 N -0.642 5.642 18 C 0.118 3.882 19 C 0.022 3.978 20 C -0.529 4.529 21 H 0.067 0.933 22 C 0.021 3.979 23 N -0.919 5.919 24 Si 0.959 3.041 25 H -0.265 1.265 26 H -0.287 1.287 27 H -0.273 1.273 28 C 0.105 3.895 29 C 0.135 3.865 30 H 0.096 0.904 31 H 0.111 0.889 32 H 0.094 0.906 33 H 0.307 0.693 34 H 0.126 0.874 35 H 0.089 0.911 36 H 0.106 0.894 37 H 0.152 0.848 38 H 0.086 0.914 39 H 0.060 0.940 40 H 0.033 0.967 41 H 0.265 0.735 42 H 0.048 0.952 43 H 0.087 0.913 44 H 0.065 0.935 45 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.397 11.661 -20.187 23.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.013 4.013 3 O -0.084 6.084 4 C -0.032 4.032 5 N -0.215 5.215 6 C -0.220 4.220 7 C 0.408 3.592 8 O -0.454 6.454 9 N -0.369 5.369 10 C 0.045 3.955 11 C -0.155 4.155 12 C -0.117 4.117 13 C -0.187 4.187 14 H 0.151 0.849 15 C 0.344 3.656 16 O -0.474 6.474 17 N -0.375 5.375 18 C -0.004 4.004 19 C 0.002 3.998 20 C -0.567 4.567 21 H 0.085 0.915 22 C -0.179 4.179 23 N -0.557 5.557 24 Si 0.785 3.215 25 H -0.189 1.189 26 H -0.213 1.213 27 H -0.199 1.199 28 C -0.018 4.018 29 C 0.013 3.987 30 H 0.115 0.885 31 H 0.129 0.871 32 H 0.113 0.887 33 H 0.322 0.678 34 H 0.144 0.856 35 H 0.108 0.892 36 H 0.124 0.876 37 H 0.170 0.830 38 H 0.104 0.896 39 H 0.078 0.922 40 H 0.051 0.949 41 H 0.074 0.926 42 H 0.067 0.933 43 H 0.105 0.895 44 H 0.084 0.916 45 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 1.644 11.388 -20.540 23.543 hybrid contribution -0.455 -0.012 1.237 1.318 sum 1.189 11.376 -19.303 22.437 Atomic orbital electron populations 1.20643 0.81491 1.05901 1.05230 1.24026 0.96070 0.83214 0.97970 1.84417 1.19131 1.35428 1.69439 1.29244 0.85776 0.90856 0.97336 1.70705 1.20854 1.11696 1.18289 1.21180 0.90417 0.94300 1.16144 1.16529 0.83866 0.82818 0.75991 1.90756 1.17106 1.83683 1.53898 1.49294 1.09510 1.07164 1.70919 1.22561 0.78682 0.92585 1.01671 1.21916 0.97675 0.98983 0.96964 1.22988 0.99163 0.96578 0.92923 1.21968 1.02007 1.04276 0.90467 0.84933 1.19885 0.87239 0.79289 0.79167 1.90586 1.25971 1.60751 1.70085 1.49968 1.21141 1.53221 1.13161 1.23374 0.89916 1.00731 0.86391 1.20260 0.92714 0.95498 0.91301 1.21170 1.31529 0.95889 1.08101 0.91452 1.25773 0.96099 0.95974 1.00050 1.70053 1.37527 1.12645 1.35479 0.85588 0.78393 0.78737 0.78815 1.18947 1.21251 1.19873 1.23225 0.97303 0.96892 0.84363 1.22651 0.96209 0.78818 1.01027 0.88547 0.87083 0.88748 0.67848 0.85632 0.89226 0.87556 0.82986 0.89554 0.92169 0.94852 0.92610 0.93293 0.89481 0.91613 0.86685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.37 9.88 71.23 0.70 -0.66 16 2 C 0.04 0.99 7.44 25.19 0.19 1.17 16 3 O -0.20 -3.37 10.73 0.38 0.00 -3.36 16 4 C 0.20 2.64 13.19 130.52 1.72 4.36 16 5 N -0.49 -10.58 9.86 -305.16 -3.01 -13.59 16 6 C -0.10 -2.76 6.96 40.41 0.28 -2.48 16 7 C 0.62 20.39 8.06 86.66 0.70 21.09 16 8 O -0.57 -22.06 15.57 -4.09 -0.06 -22.13 16 9 N -0.64 -18.82 3.69 -859.89 -3.17 -21.99 16 10 C 0.17 3.51 7.78 83.65 0.65 4.16 16 11 C -0.15 -3.72 3.14 -53.04 -0.17 -3.89 16 12 C -0.08 -1.50 10.24 30.36 0.31 -1.19 16 13 C -0.17 -4.79 6.02 -11.77 -0.07 -4.86 16 14 H 0.13 3.62 8.14 -2.39 -0.02 3.60 16 15 C 0.55 21.76 7.87 87.66 0.69 22.45 16 16 O -0.59 -26.88 15.03 -3.05 -0.05 -26.92 16 17 N -0.64 -26.43 3.69 -857.74 -3.16 -29.60 16 18 C 0.12 4.89 8.00 83.27 0.67 5.56 16 19 C 0.02 1.04 3.79 -11.12 -0.04 0.99 16 20 C -0.53 -26.87 8.83 25.60 0.23 -26.64 16 21 H 0.07 3.29 7.81 -2.91 -0.02 3.27 16 22 C 0.02 1.10 5.46 84.66 0.46 1.56 16 23 N -0.92 -50.30 13.26 21.45 0.28 -50.01 16 24 Si 0.96 40.55 29.54 68.60 2.03 42.58 16 25 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16 26 H -0.29 -12.05 7.11 99.48 0.71 -11.34 16 27 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 28 C 0.10 4.49 8.17 83.18 0.68 5.17 16 29 C 0.13 3.88 8.21 83.64 0.69 4.56 16 30 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 31 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.09 2.07 6.48 -2.39 -0.02 2.05 16 33 H 0.31 0.20 8.06 -2.91 -0.02 0.17 16 34 H 0.13 1.84 8.14 -2.39 -0.02 1.82 16 35 H 0.09 1.93 7.48 -2.39 -0.02 1.92 16 36 H 0.11 2.08 8.14 -2.39 -0.02 2.06 16 37 H 0.15 1.73 8.14 -2.39 -0.02 1.71 16 38 H 0.09 3.39 8.10 -2.39 -0.02 3.37 16 39 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 40 H 0.03 1.81 8.11 -2.39 -0.02 1.79 16 41 H 0.26 13.81 8.31 -92.71 -0.77 13.04 16 42 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 43 H 0.09 3.48 8.10 -2.39 -0.02 3.46 16 44 H 0.07 2.50 5.98 -2.38 -0.01 2.49 16 45 H 0.12 2.61 8.14 -2.39 -0.02 2.59 16 Total: -1.00 -76.47 387.42 1.57 -74.90 By element: Atomic # 1 Polarization: 17.73 SS G_CDS: 1.02 Total: 18.75 kcal Atomic # 6 Polarization: 23.67 SS G_CDS: 7.69 Total: 31.36 kcal Atomic # 7 Polarization: -106.12 SS G_CDS: -9.06 Total: -115.18 kcal Atomic # 8 Polarization: -52.31 SS G_CDS: -0.11 Total: -52.41 kcal Atomic # 14 Polarization: 40.55 SS G_CDS: 2.03 Total: 42.58 kcal Total: -76.47 1.57 -74.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276486090.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.030 kcal (2) G-P(sol) polarization free energy of solvation -76.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.902 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds