Wall clock time and date at job start Wed Apr 1 2020 03:40:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.34488 * 126.82938 * 2 1 4 4 N 1.36443 * 108.85421 * 179.97438 * 3 2 1 5 5 H 0.97007 * 124.85116 * 179.97438 * 4 3 2 6 6 C 1.34655 * 110.30015 * 0.02562 * 4 3 2 7 7 C 1.36770 * 108.39830 * 359.97438 * 6 4 3 8 8 C 1.47257 * 126.94714 * 180.02562 * 7 6 4 9 9 O 1.21628 * 120.00480 * 188.52284 * 8 7 6 10 10 N 1.34779 * 119.99887 * 8.53071 * 8 7 6 11 11 C 1.48149 * 127.83548 * 6.57836 * 10 8 7 12 12 C 1.54799 * 104.41740 * 140.36648 * 11 10 8 13 13 H 1.09001 * 110.52469 * 265.22173 * 12 11 10 14 14 C 1.52997 * 110.19529 * 142.93715 * 12 11 10 15 15 N 1.46500 * 109.46987 * 69.27728 * 14 12 11 16 16 C 1.36942 * 119.99692 * 179.97438 * 15 14 12 17 17 H 1.07997 * 120.00456 * 359.97438 * 16 15 14 18 18 C 1.38819 * 119.99682 * 179.97438 * 16 15 14 19 19 N 1.31618 * 120.00018 * 0.02562 * 18 16 15 20 20 Si 1.86795 * 119.99891 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.47037 * 90.00262 * 20 18 16 22 22 H 1.48497 * 109.47460 * 210.00189 * 20 18 16 23 23 H 1.48499 * 109.47459 * 330.00424 * 20 18 16 24 24 C 1.54285 * 104.91740 * 24.16758 * 12 11 10 25 25 H 1.09010 * 110.33812 * 240.93860 * 24 12 11 26 26 C 1.52998 * 110.34505 * 118.67777 * 24 12 11 27 27 F 1.39895 * 109.47326 * 302.36597 * 26 24 12 28 28 F 1.39901 * 109.46982 * 62.36450 * 26 24 12 29 29 F 1.39898 * 109.47092 * 182.36363 * 26 24 12 30 30 C 1.48150 * 127.84105 * 186.89324 * 10 8 7 31 31 H 1.08993 * 109.47485 * 89.97767 * 1 2 3 32 32 H 1.09006 * 109.46647 * 209.97177 * 1 2 3 33 33 H 1.08999 * 109.47139 * 329.96946 * 1 2 3 34 34 H 1.07994 * 125.57298 * 0.02562 * 3 2 1 35 35 H 1.08002 * 125.80473 * 179.73298 * 6 4 3 36 36 H 1.09001 * 110.41021 * 259.19837 * 11 10 8 37 37 H 1.09002 * 110.40998 * 21.63415 * 11 10 8 38 38 H 1.09002 * 109.46954 * 189.27213 * 14 12 11 39 39 H 1.08999 * 109.47917 * 309.27221 * 14 12 11 40 40 H 0.96996 * 120.00486 * 359.97438 * 15 14 12 41 41 H 0.97001 * 119.99856 * 179.97438 * 19 18 16 42 42 H 1.09000 * 110.40744 * 338.37889 * 30 10 8 43 43 H 1.09004 * 110.39947 * 100.68537 * 30 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3132 1.0765 0.0000 4 7 3.6110 0.6554 0.0006 5 1 4.3840 1.2416 0.0003 6 6 3.6657 -0.6900 0.0004 7 6 2.3865 -1.1740 0.0003 8 6 1.9750 -2.5879 0.0006 9 8 0.8050 -2.8810 -0.1557 10 7 2.8951 -3.5574 0.1742 11 6 4.3293 -3.3995 0.5099 12 6 4.6182 -4.5420 1.5137 13 1 4.5222 -4.1836 2.5386 14 6 6.0184 -5.1114 1.2771 15 7 7.0220 -4.1192 1.6702 16 6 8.3550 -4.4078 1.5474 17 1 8.6665 -5.3671 1.1611 18 6 9.3059 -3.4674 1.9194 19 7 8.9263 -2.2986 2.3906 20 14 11.1242 -3.8614 1.7525 21 1 11.5996 -3.4451 0.4086 22 1 11.8870 -3.1300 2.7958 23 1 11.3317 -5.3222 1.9203 24 6 3.5470 -5.6118 1.2169 25 1 2.9246 -5.7790 2.0961 26 6 4.2085 -6.9190 0.7758 27 9 5.0040 -6.6822 -0.3504 28 9 5.0056 -7.4119 1.8145 29 9 3.2208 -7.8581 0.4600 30 6 2.7031 -5.0225 0.0663 31 1 -0.3634 0.0004 -1.0276 32 1 -0.3633 -0.8903 0.5134 33 1 -0.3633 0.8897 0.5143 34 1 1.9867 2.1059 0.0004 35 1 4.5665 -1.2858 -0.0033 36 1 4.9435 -3.5111 -0.3837 37 1 4.5063 -2.4298 0.9752 38 1 6.1485 -6.0152 1.8725 39 1 6.1394 -5.3518 0.2209 40 1 6.7423 -3.2578 2.0175 41 1 9.5908 -1.6416 2.6509 42 1 1.6516 -5.2786 0.1962 43 1 3.0652 -5.3832 -0.8965 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001284372900.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:40:22 Heat of formation + Delta-G solvation = -103.331014 kcal Electronic energy + Delta-G solvation = -31646.538675 eV Core-core repulsion = 26892.832769 eV Total energy + Delta-G solvation = -4753.705905 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.141 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -50.15681 -47.59368 -47.49333 -41.28078 -39.63949 -37.60399 -34.65941 -32.73772 -32.44333 -31.39297 -29.78751 -28.92153 -26.60710 -25.97979 -25.42229 -23.71548 -22.46566 -21.59592 -20.61365 -19.94666 -18.85377 -18.43255 -18.26866 -17.80957 -17.30364 -16.72385 -16.47158 -15.41211 -15.28768 -15.16220 -14.75480 -14.51511 -14.24516 -14.15729 -14.04058 -13.85831 -13.77171 -13.61992 -13.55157 -13.25555 -13.10044 -13.01944 -12.70445 -12.59991 -12.38847 -12.05267 -11.93589 -11.70956 -11.60301 -11.36320 -10.98493 -10.84050 -10.71028 -10.44975 -10.10157 -9.79163 -9.74299 -8.90899 -8.83197 -8.56500 -8.31137 -6.97430 -5.84376 -3.12147 1.75890 2.36230 2.66036 3.01147 3.27584 3.39327 3.45603 3.46715 3.55090 3.83685 3.87730 4.06050 4.49241 4.60071 4.64468 4.81135 4.88863 4.93819 5.05823 5.15863 5.24919 5.30214 5.42465 5.50092 5.53968 5.62972 5.70401 5.76403 5.81776 5.83377 5.95358 6.05812 6.17448 6.24387 6.25877 6.62391 6.69376 6.75720 6.87271 7.38955 7.59924 7.65909 8.33170 8.34405 9.46481 10.00889 10.36514 11.38569 Molecular weight = 345.14amu Principal moments of inertia in cm(-1) A = 0.008411 B = 0.004397 C = 0.002986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3328.126221 B = 6365.930023 C = 9376.096911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.112 4.112 3 C -0.028 4.028 4 N -0.547 5.547 5 H 0.420 0.580 6 C 0.050 3.950 7 C -0.231 4.231 8 C 0.616 3.384 9 O -0.547 6.547 10 N -0.622 5.622 11 C 0.099 3.901 12 C -0.099 4.099 13 H 0.099 0.901 14 C 0.110 3.890 15 N -0.729 5.729 16 C -0.235 4.235 17 H 0.071 0.929 18 C -0.013 4.013 19 N -0.936 5.936 20 Si 0.906 3.094 21 H -0.290 1.290 22 H -0.292 1.292 23 H -0.281 1.281 24 C -0.147 4.147 25 H 0.124 0.876 26 C 0.463 3.537 27 F -0.170 7.170 28 F -0.170 7.170 29 F -0.187 7.187 30 C 0.118 3.882 31 H 0.062 0.938 32 H 0.074 0.926 33 H 0.056 0.944 34 H 0.168 0.832 35 H 0.187 0.813 36 H 0.086 0.914 37 H 0.096 0.904 38 H 0.050 0.950 39 H 0.049 0.951 40 H 0.381 0.619 41 H 0.254 0.746 42 H 0.096 0.904 43 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.277 1.851 -4.504 15.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.118 4.118 3 C -0.156 4.156 4 N -0.140 5.140 5 H 0.257 0.743 6 C -0.087 4.087 7 C -0.242 4.242 8 C 0.408 3.592 9 O -0.426 6.426 10 N -0.356 5.356 11 C -0.023 4.023 12 C -0.119 4.119 13 H 0.117 0.883 14 C -0.018 4.018 15 N -0.373 5.373 16 C -0.366 4.366 17 H 0.089 0.911 18 C -0.208 4.208 19 N -0.585 5.585 20 Si 0.737 3.263 21 H -0.218 1.218 22 H -0.218 1.218 23 H -0.207 1.207 24 C -0.168 4.168 25 H 0.142 0.858 26 C 0.409 3.591 27 F -0.152 7.152 28 F -0.151 7.151 29 F -0.168 7.168 30 C -0.005 4.005 31 H 0.081 0.919 32 H 0.093 0.907 33 H 0.075 0.925 34 H 0.185 0.815 35 H 0.203 0.797 36 H 0.104 0.896 37 H 0.114 0.886 38 H 0.067 0.933 39 H 0.066 0.934 40 H 0.215 0.785 41 H 0.064 0.936 42 H 0.115 0.885 43 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -14.739 1.785 -4.652 15.559 hybrid contribution 1.705 0.156 0.110 1.715 sum -13.035 1.941 -4.542 13.939 Atomic orbital electron populations 1.20141 0.89446 1.02229 1.01813 1.20494 0.95465 0.90267 1.05613 1.21570 0.82588 0.99126 1.12297 1.41610 1.08374 1.06929 1.57134 0.74295 1.22777 0.99318 0.83879 1.02728 1.20165 0.92788 0.92128 1.19071 1.16987 0.83727 0.83293 0.75177 1.90732 1.17126 1.83328 1.51381 1.48748 1.10514 1.05479 1.70881 1.23004 0.80365 0.99996 0.98950 1.22437 0.94970 0.93381 1.01107 0.88293 1.21982 0.85440 0.94392 0.99947 1.42242 1.01652 1.15556 1.77854 1.19220 0.82480 0.99482 1.35430 0.91110 1.24690 0.97901 0.96332 1.01909 1.69642 1.32647 1.06399 1.49779 0.86204 0.85377 0.77512 0.77211 1.21750 1.21818 1.20712 1.23456 0.99437 0.91691 1.02223 0.85795 1.20266 0.76972 0.86403 0.75500 1.93147 1.74640 1.94052 1.53340 1.93132 1.74500 1.89199 1.58286 1.93175 1.61945 1.68570 1.93150 1.22123 1.00943 0.80762 0.96702 0.91906 0.90728 0.92498 0.81519 0.79670 0.89567 0.88612 0.93255 0.93373 0.78507 0.93592 0.88526 0.90044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.90 9.92 36.01 0.36 -0.55 16 2 C -0.11 -1.42 6.35 -102.54 -0.65 -2.08 16 3 C -0.03 -0.29 11.82 -16.83 -0.20 -0.48 16 4 N -0.55 -5.38 5.90 -12.85 -0.08 -5.46 16 5 H 0.42 2.94 8.96 -40.82 -0.37 2.57 16 6 C 0.05 0.60 10.28 -16.84 -0.17 0.43 16 7 C -0.23 -3.26 6.22 -103.35 -0.64 -3.90 16 8 C 0.62 9.57 7.89 -12.59 -0.10 9.47 16 9 O -0.55 -9.78 15.70 5.25 0.08 -9.69 16 10 N -0.62 -8.55 3.31 -170.37 -0.56 -9.11 16 11 C 0.10 1.35 5.02 -2.19 -0.01 1.34 16 12 C -0.10 -1.42 3.07 -89.00 -0.27 -1.70 16 13 H 0.10 1.44 8.14 -51.93 -0.42 1.01 16 14 C 0.11 2.01 4.21 -4.04 -0.02 1.99 16 15 N -0.73 -16.84 5.47 -59.91 -0.33 -17.17 16 16 C -0.24 -6.24 9.99 -15.05 -0.15 -6.39 16 17 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 18 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 19 N -0.94 -26.57 13.06 55.49 0.72 -25.85 16 20 Si 0.91 21.66 29.55 -169.99 -5.02 16.64 16 21 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 22 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 23 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 24 C -0.15 -1.79 3.08 -89.22 -0.27 -2.06 16 25 H 0.12 1.29 8.14 -51.92 -0.42 0.87 16 26 C 0.46 6.11 2.33 37.16 0.09 6.20 16 27 F -0.17 -2.47 13.37 2.25 0.03 -2.44 16 28 F -0.17 -2.52 14.41 2.25 0.03 -2.49 16 29 F -0.19 -2.33 17.12 2.25 0.04 -2.29 16 30 C 0.12 1.45 6.36 -2.41 -0.02 1.44 16 31 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.07 0.99 7.04 -51.93 -0.37 0.62 16 33 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.17 1.15 8.06 -52.49 -0.42 0.72 16 35 H 0.19 2.14 5.09 -52.49 -0.27 1.87 16 36 H 0.09 1.21 7.76 -51.93 -0.40 0.81 16 37 H 0.10 1.28 5.03 -51.93 -0.26 1.01 16 38 H 0.05 0.96 5.20 -51.93 -0.27 0.69 16 39 H 0.05 0.91 5.53 -51.93 -0.29 0.62 16 40 H 0.38 9.07 7.60 -40.82 -0.31 8.76 16 41 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 42 H 0.10 1.16 7.84 -51.93 -0.41 0.75 16 43 H 0.08 0.97 7.31 -51.93 -0.38 0.59 16 LS Contribution 355.39 15.07 5.36 5.36 Total: -1.00 -32.34 355.39 -6.86 -39.21 By element: Atomic # 1 Polarization: 15.01 SS G_CDS: -4.98 Total: 10.03 kcal Atomic # 6 Polarization: 5.43 SS G_CDS: -2.16 Total: 3.27 kcal Atomic # 7 Polarization: -57.35 SS G_CDS: -0.24 Total: -57.59 kcal Atomic # 8 Polarization: -9.78 SS G_CDS: 0.08 Total: -9.69 kcal Atomic # 9 Polarization: -7.32 SS G_CDS: 0.10 Total: -7.22 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -32.34 -6.86 -39.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284372900.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.124 kcal (2) G-P(sol) polarization free energy of solvation -32.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds