Wall clock time and date at job start Wed Apr 1 2020 03:40:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.34488 * 126.82938 * 2 1 4 4 N 1.36443 * 108.85421 * 179.97438 * 3 2 1 5 5 H 0.97007 * 124.85116 * 179.97438 * 4 3 2 6 6 C 1.34655 * 110.30015 * 0.02562 * 4 3 2 7 7 C 1.36770 * 108.39830 * 359.97438 * 6 4 3 8 8 C 1.47257 * 126.94714 * 180.02562 * 7 6 4 9 9 O 1.21628 * 120.00480 * 188.52284 * 8 7 6 10 10 N 1.34779 * 119.99887 * 8.53071 * 8 7 6 11 11 C 1.48149 * 127.83548 * 6.57836 * 10 8 7 12 12 C 1.54799 * 104.41740 * 140.36648 * 11 10 8 13 13 H 1.09001 * 110.52469 * 265.22173 * 12 11 10 14 14 C 1.52997 * 110.19529 * 142.93715 * 12 11 10 15 15 N 1.46500 * 109.46987 * 69.27728 * 14 12 11 16 16 C 1.36942 * 119.99692 * 179.97438 * 15 14 12 17 17 H 1.07997 * 120.00456 * 359.97438 * 16 15 14 18 18 C 1.38819 * 119.99682 * 179.97438 * 16 15 14 19 19 N 1.31618 * 120.00018 * 0.02562 * 18 16 15 20 20 Si 1.86795 * 119.99891 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.47037 * 90.00262 * 20 18 16 22 22 H 1.48497 * 109.47460 * 210.00189 * 20 18 16 23 23 H 1.48499 * 109.47459 * 330.00424 * 20 18 16 24 24 C 1.54285 * 104.91740 * 24.16758 * 12 11 10 25 25 H 1.09010 * 110.33812 * 240.93860 * 24 12 11 26 26 C 1.52998 * 110.34505 * 118.67777 * 24 12 11 27 27 F 1.39895 * 109.47326 * 302.36597 * 26 24 12 28 28 F 1.39901 * 109.46982 * 62.36450 * 26 24 12 29 29 F 1.39898 * 109.47092 * 182.36363 * 26 24 12 30 30 C 1.48150 * 127.84105 * 186.89324 * 10 8 7 31 31 H 1.08993 * 109.47485 * 89.97767 * 1 2 3 32 32 H 1.09006 * 109.46647 * 209.97177 * 1 2 3 33 33 H 1.08999 * 109.47139 * 329.96946 * 1 2 3 34 34 H 1.07994 * 125.57298 * 0.02562 * 3 2 1 35 35 H 1.08002 * 125.80473 * 179.73298 * 6 4 3 36 36 H 1.09001 * 110.41021 * 259.19837 * 11 10 8 37 37 H 1.09002 * 110.40998 * 21.63415 * 11 10 8 38 38 H 1.09002 * 109.46954 * 189.27213 * 14 12 11 39 39 H 1.08999 * 109.47917 * 309.27221 * 14 12 11 40 40 H 0.96996 * 120.00486 * 359.97438 * 15 14 12 41 41 H 0.97001 * 119.99856 * 179.97438 * 19 18 16 42 42 H 1.09000 * 110.40744 * 338.37889 * 30 10 8 43 43 H 1.09004 * 110.39947 * 100.68537 * 30 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3132 1.0765 0.0000 4 7 3.6110 0.6554 0.0006 5 1 4.3840 1.2416 0.0003 6 6 3.6657 -0.6900 0.0004 7 6 2.3865 -1.1740 0.0003 8 6 1.9750 -2.5879 0.0006 9 8 0.8050 -2.8810 -0.1557 10 7 2.8951 -3.5574 0.1742 11 6 4.3293 -3.3995 0.5099 12 6 4.6182 -4.5420 1.5137 13 1 4.5222 -4.1836 2.5386 14 6 6.0184 -5.1114 1.2771 15 7 7.0220 -4.1192 1.6702 16 6 8.3550 -4.4078 1.5474 17 1 8.6665 -5.3671 1.1611 18 6 9.3059 -3.4674 1.9194 19 7 8.9263 -2.2986 2.3906 20 14 11.1242 -3.8614 1.7525 21 1 11.5996 -3.4451 0.4086 22 1 11.8870 -3.1300 2.7958 23 1 11.3317 -5.3222 1.9203 24 6 3.5470 -5.6118 1.2169 25 1 2.9246 -5.7790 2.0961 26 6 4.2085 -6.9190 0.7758 27 9 5.0040 -6.6822 -0.3504 28 9 5.0056 -7.4119 1.8145 29 9 3.2208 -7.8581 0.4600 30 6 2.7031 -5.0225 0.0663 31 1 -0.3634 0.0004 -1.0276 32 1 -0.3633 -0.8903 0.5134 33 1 -0.3633 0.8897 0.5143 34 1 1.9867 2.1059 0.0004 35 1 4.5665 -1.2858 -0.0033 36 1 4.9435 -3.5111 -0.3837 37 1 4.5063 -2.4298 0.9752 38 1 6.1485 -6.0152 1.8725 39 1 6.1394 -5.3518 0.2209 40 1 6.7423 -3.2578 2.0175 41 1 9.5908 -1.6416 2.6509 42 1 1.6516 -5.2786 0.1962 43 1 3.0652 -5.3832 -0.8965 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001284372900.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:40:21 Heat of formation + Delta-G solvation = -123.780610 kcal Electronic energy + Delta-G solvation = -31647.425436 eV Core-core repulsion = 26892.832769 eV Total energy + Delta-G solvation = -4754.592666 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.141 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -51.27274 -48.67232 -48.64338 -42.20146 -40.73989 -38.83157 -36.36828 -34.09609 -33.32768 -32.95945 -30.94952 -30.22203 -27.55242 -27.14677 -26.77859 -25.21137 -23.88919 -22.68953 -21.72682 -20.99528 -19.84126 -19.55165 -19.35771 -19.11310 -18.75264 -17.95751 -17.62431 -16.67959 -16.49250 -16.40757 -16.23492 -15.54910 -15.42432 -15.30542 -15.22396 -15.17299 -15.08393 -14.79708 -14.67643 -14.55863 -14.26526 -14.08224 -13.85960 -13.55330 -13.38272 -13.33478 -13.20384 -12.97586 -12.87465 -12.75744 -12.49121 -12.31354 -12.13195 -12.00656 -11.70614 -11.61055 -10.99861 -10.83034 -9.96139 -9.54088 -9.17557 -8.90134 -7.91425 -5.17494 0.72308 1.50461 1.50593 1.51606 1.57380 1.59205 1.94770 2.45142 2.46159 2.57478 2.76179 2.78892 2.98441 3.40855 3.47416 3.52500 3.71882 3.92899 3.97129 4.06059 4.11713 4.21992 4.31269 4.36067 4.43175 4.56739 4.64526 4.70117 4.72898 4.82268 4.88043 4.96314 5.05976 5.11127 5.23028 5.27386 5.34171 5.55749 5.84298 5.97693 6.31410 6.46352 6.65400 7.18374 7.39737 8.12037 8.38503 9.31510 Molecular weight = 345.14amu Principal moments of inertia in cm(-1) A = 0.008411 B = 0.004397 C = 0.002986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3328.126221 B = 6365.930023 C = 9376.096911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.146 4.146 3 C -0.008 4.008 4 N -0.536 5.536 5 H 0.435 0.565 6 C 0.049 3.951 7 C -0.262 4.262 8 C 0.610 3.390 9 O -0.579 6.579 10 N -0.619 5.619 11 C 0.106 3.894 12 C -0.092 4.092 13 H 0.101 0.899 14 C 0.113 3.887 15 N -0.736 5.736 16 C -0.239 4.239 17 H 0.069 0.931 18 C -0.065 4.065 19 N -0.963 5.963 20 Si 0.962 3.038 21 H -0.288 1.288 22 H -0.297 1.297 23 H -0.275 1.275 24 C -0.134 4.134 25 H 0.147 0.853 26 C 0.464 3.536 27 F -0.179 7.179 28 F -0.179 7.179 29 F -0.180 7.180 30 C 0.117 3.883 31 H 0.061 0.939 32 H 0.048 0.952 33 H 0.081 0.919 34 H 0.205 0.795 35 H 0.188 0.812 36 H 0.082 0.918 37 H 0.099 0.901 38 H 0.045 0.955 39 H 0.048 0.952 40 H 0.377 0.623 41 H 0.250 0.750 42 H 0.102 0.898 43 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.355 2.504 -4.649 15.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.152 4.152 3 C -0.136 4.136 4 N -0.130 5.130 5 H 0.275 0.725 6 C -0.089 4.089 7 C -0.273 4.273 8 C 0.404 3.596 9 O -0.460 6.460 10 N -0.351 5.351 11 C -0.016 4.016 12 C -0.112 4.112 13 H 0.119 0.881 14 C -0.013 4.013 15 N -0.379 5.379 16 C -0.371 4.371 17 H 0.087 0.913 18 C -0.258 4.258 19 N -0.613 5.613 20 Si 0.792 3.208 21 H -0.215 1.215 22 H -0.223 1.223 23 H -0.201 1.201 24 C -0.155 4.155 25 H 0.165 0.835 26 C 0.410 3.590 27 F -0.160 7.160 28 F -0.160 7.160 29 F -0.161 7.161 30 C -0.006 4.006 31 H 0.080 0.920 32 H 0.067 0.933 33 H 0.100 0.900 34 H 0.222 0.778 35 H 0.205 0.795 36 H 0.100 0.900 37 H 0.117 0.883 38 H 0.063 0.937 39 H 0.066 0.934 40 H 0.209 0.791 41 H 0.059 0.941 42 H 0.120 0.880 43 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -14.808 2.412 -4.810 15.755 hybrid contribution 1.706 -0.079 0.127 1.713 sum -13.102 2.333 -4.683 14.108 Atomic orbital electron populations 1.20084 0.89085 1.02168 1.01739 1.20804 0.96217 0.90670 1.07510 1.22094 0.81973 1.00136 1.09382 1.41675 1.09170 1.06358 1.55801 0.72507 1.22732 0.98659 0.84941 1.02562 1.20308 0.94115 0.91883 1.20950 1.17308 0.83454 0.84154 0.74704 1.90703 1.18313 1.83895 1.53098 1.48711 1.10223 1.05896 1.70316 1.22898 0.80241 0.99903 0.98542 1.22278 0.93296 0.94216 1.01432 0.88110 1.22038 0.86505 0.93309 0.99491 1.42360 1.01545 1.16249 1.77730 1.19521 0.84139 0.99205 1.34230 0.91254 1.25343 1.01333 0.96507 1.02624 1.69760 1.33366 1.07090 1.51133 0.85306 0.81236 0.77386 0.76834 1.21487 1.22335 1.20074 1.23421 0.98668 0.90348 1.03065 0.83471 1.20358 0.76820 0.86839 0.74995 1.93127 1.75001 1.94111 1.53787 1.93112 1.74878 1.89346 1.58710 1.93190 1.61503 1.68374 1.93057 1.22219 1.01351 0.80040 0.97021 0.92003 0.93274 0.89983 0.77791 0.79547 0.89992 0.88285 0.93709 0.93397 0.79079 0.94068 0.87951 0.89506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.64 9.92 71.24 0.71 -0.93 16 2 C -0.15 -3.56 6.35 -18.51 -0.12 -3.67 16 3 C -0.01 -0.14 11.82 83.12 0.98 0.85 16 4 N -0.54 -9.41 5.90 -194.56 -1.15 -10.56 16 5 H 0.44 5.00 8.96 -92.70 -0.83 4.16 16 6 C 0.05 1.14 10.28 83.92 0.86 2.01 16 7 C -0.26 -7.30 6.22 -19.04 -0.12 -7.41 16 8 C 0.61 19.03 7.89 86.61 0.68 19.71 16 9 O -0.58 -21.05 15.70 -4.12 -0.06 -21.12 16 10 N -0.62 -16.69 3.31 -811.17 -2.69 -19.38 16 11 C 0.11 2.83 5.02 86.68 0.43 3.27 16 12 C -0.09 -2.56 3.07 -9.74 -0.03 -2.59 16 13 H 0.10 2.81 8.14 -2.39 -0.02 2.79 16 14 C 0.11 4.05 4.21 86.38 0.36 4.42 16 15 N -0.74 -33.78 5.47 -343.45 -1.88 -35.66 16 16 C -0.24 -12.59 9.99 84.03 0.84 -11.75 16 17 H 0.07 3.61 7.83 -2.91 -0.02 3.58 16 18 C -0.07 -3.54 5.50 84.86 0.47 -3.07 16 19 N -0.96 -54.62 13.06 21.65 0.28 -54.34 16 20 Si 0.96 44.26 29.55 68.60 2.03 46.29 16 21 H -0.29 -13.01 7.11 99.48 0.71 -12.31 16 22 H -0.30 -13.78 7.11 99.48 0.71 -13.07 16 23 H -0.28 -12.25 7.11 99.48 0.71 -11.55 16 24 C -0.13 -3.07 3.08 -9.89 -0.03 -3.10 16 25 H 0.15 2.74 8.14 -2.38 -0.02 2.72 16 26 C 0.46 11.66 2.33 71.98 0.17 11.83 16 27 F -0.18 -5.01 13.37 44.97 0.60 -4.41 16 28 F -0.18 -5.12 14.41 44.97 0.65 -4.47 16 29 F -0.18 -4.20 17.12 44.97 0.77 -3.43 16 30 C 0.12 2.75 6.36 86.53 0.55 3.30 16 31 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.05 1.33 7.04 -2.38 -0.02 1.31 16 33 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 34 H 0.21 1.95 8.06 -2.91 -0.02 1.93 16 35 H 0.19 4.20 5.09 -2.91 -0.01 4.18 16 36 H 0.08 2.27 7.76 -2.39 -0.02 2.25 16 37 H 0.10 2.59 5.03 -2.39 -0.01 2.58 16 38 H 0.05 1.70 5.20 -2.39 -0.01 1.69 16 39 H 0.05 1.77 5.53 -2.39 -0.01 1.76 16 40 H 0.38 17.88 7.60 -92.71 -0.70 17.17 16 41 H 0.25 13.89 8.31 -92.71 -0.77 13.12 16 42 H 0.10 2.35 7.84 -2.39 -0.02 2.33 16 43 H 0.09 1.97 7.31 -2.38 -0.02 1.95 16 Total: -1.00 -68.85 355.39 3.88 -64.97 By element: Atomic # 1 Polarization: 29.68 SS G_CDS: -0.43 Total: 29.24 kcal Atomic # 6 Polarization: 7.09 SS G_CDS: 5.76 Total: 12.85 kcal Atomic # 7 Polarization: -114.50 SS G_CDS: -5.43 Total: -119.93 kcal Atomic # 8 Polarization: -21.05 SS G_CDS: -0.06 Total: -21.12 kcal Atomic # 9 Polarization: -14.33 SS G_CDS: 2.02 Total: -12.31 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.29 kcal Total: -68.85 3.88 -64.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284372900.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.809 kcal (2) G-P(sol) polarization free energy of solvation -68.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds