Wall clock time and date at job start Wed Apr 1 2020 03:06:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 110.38494 * 2 1 4 4 N 1.46494 * 109.46892 * 60.77779 * 3 2 1 5 5 C 1.36939 * 119.99844 * 179.97438 * 4 3 2 6 6 H 1.08006 * 119.99907 * 359.97438 * 5 4 3 7 7 C 1.38805 * 120.00272 * 180.02562 * 5 4 3 8 8 N 1.31625 * 120.00171 * 359.97438 * 7 5 4 9 9 Si 1.86807 * 120.00441 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.46686 * 59.99863 * 9 7 5 11 11 H 1.48493 * 109.47100 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.46883 * 300.00466 * 9 7 5 13 13 C 1.54277 * 110.34542 * 122.22929 * 2 1 3 14 14 C 1.54397 * 104.96142 * 118.87408 * 13 2 1 15 15 N 1.48151 * 104.61301 * 336.13352 * 14 13 2 16 16 C 1.34775 * 127.83495 * 219.60282 * 15 14 13 17 17 O 1.21285 * 119.99816 * 180.02562 * 16 15 14 18 18 C 1.50697 * 120.00151 * 0.02810 * 16 15 14 19 19 N 1.46501 * 109.46966 * 179.97438 * 18 16 15 20 20 C 1.46441 * 126.08570 * 85.00191 * 19 18 16 21 21 C 1.53207 * 113.70584 * 178.24645 * 20 19 18 22 22 C 1.55552 * 106.24156 * 27.54617 * 21 20 19 23 23 S 1.67293 * 126.08335 * 264.68949 * 19 18 16 24 24 O 1.42102 * 105.40636 * 275.00002 * 23 19 18 25 25 O 1.42099 * 105.40849 * 45.25846 * 23 19 18 26 26 C 1.48144 * 104.32233 * 39.58575 * 15 14 13 27 27 H 1.08996 * 109.47407 * 299.21712 * 1 2 3 28 28 H 1.08997 * 109.47454 * 59.22314 * 1 2 3 29 29 H 1.09003 * 109.46772 * 179.22257 * 1 2 3 30 30 H 1.08997 * 109.47041 * 180.77675 * 3 2 1 31 31 H 1.08998 * 109.47234 * 300.77828 * 3 2 1 32 32 H 0.96991 * 120.00277 * 0.02562 * 4 3 2 33 33 H 0.96991 * 120.00265 * 179.97438 * 8 7 5 34 34 H 1.08996 * 110.34449 * 0.02562 * 13 2 1 35 35 H 1.08998 * 110.43665 * 237.78823 * 13 2 1 36 36 H 1.08992 * 110.40719 * 94.91736 * 14 13 2 37 37 H 1.09000 * 110.40697 * 217.35430 * 14 13 2 38 38 H 1.08989 * 109.47247 * 299.99978 * 18 16 15 39 39 H 1.09000 * 109.46921 * 60.00423 * 18 16 15 40 40 H 1.09007 * 108.64853 * 299.35456 * 20 19 18 41 41 H 1.09004 * 108.64821 * 57.13241 * 20 19 18 42 42 H 1.09002 * 110.09993 * 146.74773 * 21 20 19 43 43 H 1.09000 * 110.09656 * 268.35097 * 21 20 19 44 44 H 1.09004 * 111.36717 * 80.61392 * 22 21 20 45 45 H 1.08997 * 111.37211 * 205.35439 * 22 21 20 46 46 H 1.09004 * 110.40486 * 201.62525 * 26 15 14 47 47 H 1.09003 * 110.50809 * 79.25233 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0629 1.4342 0.0000 4 7 1.6010 2.1268 1.2054 5 6 1.9558 3.4312 1.4241 6 1 2.5767 3.9492 0.7080 7 6 1.5186 4.0873 2.5664 8 7 0.7624 3.4559 3.4394 9 14 2.0033 5.8665 2.8651 10 1 1.4995 6.7103 1.7517 11 1 1.4121 6.3324 4.1452 12 1 3.4829 5.9713 2.9353 13 6 2.0664 -0.7714 1.2236 14 6 2.8803 -1.9421 0.6313 15 7 2.3140 -2.1437 -0.7227 16 6 2.0772 -3.3105 -1.3545 17 8 1.6060 -3.3102 -2.4721 18 6 2.3977 -4.6154 -0.6722 19 7 2.0511 -5.7284 -1.5596 20 6 2.9011 -6.2895 -2.6118 21 6 2.2716 -7.4797 -3.3428 22 6 0.7315 -7.2838 -3.2475 23 16 0.6168 -6.5892 -1.5462 24 8 0.7900 -7.5962 -0.5587 25 8 -0.4098 -5.6111 -1.4526 26 6 2.0667 -0.7720 -1.2245 27 1 -0.3634 0.5016 0.8969 28 1 -0.3634 0.5258 -0.8829 29 1 -0.3633 -1.0276 -0.0139 30 1 3.1527 1.4169 -0.0139 31 1 1.6966 1.9580 -0.8829 32 1 1.0444 1.6612 1.8490 33 1 0.4572 3.9143 4.2378 34 1 1.2399 -1.1508 1.8245 35 1 2.7092 -0.1298 1.8262 36 1 3.9355 -1.6769 0.5664 37 1 2.7496 -2.8399 1.2355 38 1 3.4621 -4.6526 -0.4409 39 1 1.8224 -4.6940 0.2503 40 1 3.1162 -5.5074 -3.3401 41 1 3.8414 -6.6125 -2.1651 42 1 2.5846 -7.4862 -4.3869 43 1 2.5613 -8.4123 -2.8586 44 1 0.3744 -6.5747 -3.9943 45 1 0.2046 -8.2349 -3.3236 46 1 1.3223 -0.7870 -2.0206 47 1 2.9938 -0.3227 -1.5807 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324737828.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:06:16 Heat of formation + Delta-G solvation = -70.875418 kcal Electronic energy + Delta-G solvation = -29106.888643 eV Core-core repulsion = 25031.890809 eV Total energy + Delta-G solvation = -4074.997833 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.156 amu Computer time = 2.10 seconds Orbital eigenvalues (eV) -40.15962 -38.36018 -37.54309 -36.98939 -36.13784 -34.79515 -33.54475 -32.62121 -30.26161 -29.45880 -28.58728 -26.76188 -25.99119 -24.99688 -23.07775 -22.51288 -22.33088 -19.80701 -19.09506 -18.64059 -17.50654 -17.46322 -17.20229 -16.94819 -16.08854 -15.92422 -15.57317 -15.12729 -14.89247 -14.60133 -14.37139 -13.90751 -13.86089 -13.60747 -13.48410 -13.41930 -13.15530 -12.77775 -12.63224 -12.36928 -12.32285 -12.22646 -12.21509 -12.12327 -11.96902 -11.61735 -11.39630 -11.12784 -10.99387 -10.86636 -10.80046 -10.54162 -10.40099 -10.25575 -10.22061 -9.91954 -9.65526 -9.16878 -8.86556 -8.64909 -6.91103 -5.76143 -3.04425 -0.13093 2.02272 2.58170 2.95154 3.25416 3.38653 3.44319 3.49031 3.49828 3.83348 4.10645 4.36973 4.40308 4.48110 4.59206 4.78363 4.81124 4.90725 4.93649 5.02555 5.08610 5.13524 5.23198 5.32190 5.34201 5.46672 5.51958 5.54330 5.60780 5.82274 5.92521 5.94977 5.98777 6.08204 6.17543 6.26489 6.33529 6.48028 6.62653 6.70686 6.82763 6.87179 7.57845 7.70149 8.13927 8.43092 9.54439 10.12222 10.47293 11.46636 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.031272 B = 0.002146 C = 0.002113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.145860 B =13046.112231 C =13247.747981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.080 4.080 3 C 0.167 3.833 4 N -0.729 5.729 5 C -0.239 4.239 6 H 0.069 0.931 7 C -0.013 4.013 8 N -0.934 5.934 9 Si 0.907 3.093 10 H -0.287 1.287 11 H -0.292 1.292 12 H -0.287 1.287 13 C -0.125 4.125 14 C 0.097 3.903 15 N -0.621 5.621 16 C 0.512 3.488 17 O -0.531 6.531 18 C 0.148 3.852 19 N -0.971 5.971 20 C 0.081 3.919 21 C -0.122 4.122 22 C -0.588 4.588 23 S 2.562 3.438 24 O -0.951 6.951 25 O -0.943 6.943 26 C 0.117 3.883 27 H 0.069 0.931 28 H 0.052 0.948 29 H 0.046 0.954 30 H 0.021 0.979 31 H 0.021 0.979 32 H 0.385 0.615 33 H 0.255 0.745 34 H 0.072 0.928 35 H 0.094 0.906 36 H 0.075 0.925 37 H 0.075 0.925 38 H 0.110 0.890 39 H 0.107 0.893 40 H 0.079 0.921 41 H 0.080 0.920 42 H 0.110 0.890 43 H 0.095 0.905 44 H 0.144 0.856 45 H 0.138 0.862 46 H 0.081 0.919 47 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.735 -25.269 -12.651 28.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.081 4.081 3 C 0.039 3.961 4 N -0.374 5.374 5 C -0.370 4.370 6 H 0.087 0.913 7 C -0.209 4.209 8 N -0.582 5.582 9 Si 0.738 3.262 10 H -0.213 1.213 11 H -0.217 1.217 12 H -0.213 1.213 13 C -0.163 4.163 14 C -0.026 4.026 15 N -0.356 5.356 16 C 0.298 3.702 17 O -0.407 6.407 18 C 0.020 3.980 19 N -0.810 5.810 20 C -0.046 4.046 21 C -0.161 4.161 22 C -0.719 4.719 23 S 2.658 3.342 24 O -0.941 6.941 25 O -0.933 6.933 26 C -0.006 4.006 27 H 0.088 0.912 28 H 0.071 0.929 29 H 0.065 0.935 30 H 0.038 0.962 31 H 0.038 0.962 32 H 0.220 0.780 33 H 0.065 0.935 34 H 0.091 0.909 35 H 0.112 0.888 36 H 0.093 0.907 37 H 0.094 0.906 38 H 0.128 0.872 39 H 0.125 0.875 40 H 0.097 0.903 41 H 0.098 0.902 42 H 0.129 0.871 43 H 0.113 0.887 44 H 0.163 0.837 45 H 0.157 0.843 46 H 0.100 0.900 47 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 4.860 -25.236 -12.503 28.580 hybrid contribution 0.459 0.964 -0.178 1.082 sum 5.319 -24.272 -12.681 27.897 Atomic orbital electron populations 1.21780 0.93524 1.00641 1.02849 1.21674 0.96636 0.96127 0.93666 1.20649 0.95886 0.88389 0.91130 1.42351 1.61727 1.11339 1.21935 1.19173 1.25673 0.88347 1.03811 0.91309 1.24721 1.00528 0.98274 0.97411 1.69642 1.39759 1.36457 1.12378 0.86275 0.77868 0.85000 0.77073 1.21333 1.21748 1.21330 1.22652 1.00294 0.95844 0.97513 1.22564 0.98081 0.99426 0.82516 1.49051 1.62856 1.05702 1.17971 1.20818 0.78396 0.84471 0.86529 1.90675 1.44060 1.86757 1.19216 1.20739 1.03606 0.82455 0.91220 1.56629 1.34562 1.44756 1.45102 1.21579 0.95709 0.96265 0.91006 1.22381 0.90830 0.98565 1.04328 1.30750 1.03884 1.13553 1.23721 1.06794 0.73810 0.75503 0.78096 1.93656 1.85294 1.60323 1.54798 1.93654 1.56032 1.57532 1.86057 1.22419 1.00904 0.80219 0.97070 0.91229 0.92858 0.93535 0.96153 0.96167 0.78018 0.93477 0.90901 0.88769 0.90662 0.90632 0.87181 0.87466 0.90290 0.90205 0.87122 0.88655 0.83726 0.84350 0.90038 0.90964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.19 8.06 37.16 0.30 -1.89 16 2 C -0.08 -1.26 0.73 -153.11 -0.11 -1.37 16 3 C 0.17 3.22 4.91 -4.04 -0.02 3.20 16 4 N -0.73 -17.67 4.93 -59.91 -0.30 -17.96 16 5 C -0.24 -6.53 9.99 -15.06 -0.15 -6.68 16 6 H 0.07 1.83 7.83 -52.48 -0.41 1.42 16 7 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 8 N -0.93 -27.76 13.06 55.49 0.72 -27.04 16 9 Si 0.91 22.20 29.55 -169.99 -5.02 17.17 16 10 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 11 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 12 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 13 C -0.12 -1.77 5.78 -25.33 -0.15 -1.92 16 14 C 0.10 1.05 6.92 -2.40 -0.02 1.04 16 15 N -0.62 -8.01 3.32 -169.30 -0.56 -8.57 16 16 C 0.51 6.81 7.98 -10.99 -0.09 6.73 16 17 O -0.53 -8.81 16.70 5.55 0.09 -8.72 16 18 C 0.15 1.41 5.70 -5.19 -0.03 1.38 16 19 N -0.97 -9.00 2.82 -115.59 -0.33 -9.33 16 20 C 0.08 0.49 6.84 -3.97 -0.03 0.46 16 21 C -0.12 -0.49 6.61 -25.27 -0.17 -0.66 16 22 C -0.59 -3.20 7.67 38.51 0.30 -2.91 16 23 S 2.56 25.75 6.19 -107.50 -0.67 25.08 16 24 O -0.95 -11.60 18.14 -57.37 -1.04 -12.64 16 25 O -0.94 -13.82 18.04 -57.37 -1.03 -14.85 16 26 C 0.12 1.66 6.14 -2.41 -0.01 1.65 16 27 H 0.07 1.30 7.01 -51.93 -0.36 0.94 16 28 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 30 H 0.02 0.39 8.12 -51.93 -0.42 -0.03 16 31 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 32 H 0.39 9.78 6.28 -40.82 -0.26 9.52 16 33 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 34 H 0.07 1.04 7.71 -51.93 -0.40 0.64 16 35 H 0.09 1.50 7.49 -51.93 -0.39 1.11 16 36 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.08 0.63 7.30 -51.93 -0.38 0.25 16 38 H 0.11 0.68 8.14 -51.94 -0.42 0.26 16 39 H 0.11 0.92 7.95 -51.93 -0.41 0.51 16 40 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 42 H 0.11 0.24 8.14 -51.93 -0.42 -0.18 16 43 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 44 H 0.14 0.77 8.14 -51.93 -0.42 0.34 16 45 H 0.14 0.43 8.14 -51.93 -0.42 0.00 16 46 H 0.08 1.25 7.60 -51.93 -0.39 0.86 16 47 H 0.07 0.96 7.85 -51.93 -0.41 0.55 16 LS Contribution 389.91 15.07 5.88 5.88 Total: -1.00 -37.92 389.91 -10.15 -48.07 By element: Atomic # 1 Polarization: 11.98 SS G_CDS: -7.62 Total: 4.36 kcal Atomic # 6 Polarization: -1.18 SS G_CDS: -0.27 Total: -1.45 kcal Atomic # 7 Polarization: -62.43 SS G_CDS: -0.46 Total: -62.89 kcal Atomic # 8 Polarization: -34.23 SS G_CDS: -1.98 Total: -36.21 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.17 kcal Atomic # 16 Polarization: 25.75 SS G_CDS: -0.67 Total: 25.08 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -37.92 -10.15 -48.07 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324737828.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.804 kcal (2) G-P(sol) polarization free energy of solvation -37.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.10 seconds