Wall clock time and date at job start Wed Apr 1 2020 03:06:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 110.38494 * 2 1 4 4 N 1.46494 * 109.46892 * 60.77779 * 3 2 1 5 5 C 1.36939 * 119.99844 * 179.97438 * 4 3 2 6 6 H 1.08006 * 119.99907 * 359.97438 * 5 4 3 7 7 C 1.38805 * 120.00272 * 180.02562 * 5 4 3 8 8 N 1.31625 * 120.00171 * 359.97438 * 7 5 4 9 9 Si 1.86807 * 120.00441 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.46686 * 59.99863 * 9 7 5 11 11 H 1.48493 * 109.47100 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.46883 * 300.00466 * 9 7 5 13 13 C 1.54277 * 110.34542 * 122.22929 * 2 1 3 14 14 C 1.54397 * 104.96142 * 118.87408 * 13 2 1 15 15 N 1.48151 * 104.61301 * 336.13352 * 14 13 2 16 16 C 1.34775 * 127.83495 * 219.60282 * 15 14 13 17 17 O 1.21285 * 119.99816 * 180.02562 * 16 15 14 18 18 C 1.50697 * 120.00151 * 0.02810 * 16 15 14 19 19 N 1.46501 * 109.46966 * 179.97438 * 18 16 15 20 20 C 1.46441 * 126.08570 * 85.00191 * 19 18 16 21 21 C 1.53207 * 113.70584 * 178.24645 * 20 19 18 22 22 C 1.55552 * 106.24156 * 27.54617 * 21 20 19 23 23 S 1.67293 * 126.08335 * 264.68949 * 19 18 16 24 24 O 1.42102 * 105.40636 * 275.00002 * 23 19 18 25 25 O 1.42099 * 105.40849 * 45.25846 * 23 19 18 26 26 C 1.48144 * 104.32233 * 39.58575 * 15 14 13 27 27 H 1.08996 * 109.47407 * 299.21712 * 1 2 3 28 28 H 1.08997 * 109.47454 * 59.22314 * 1 2 3 29 29 H 1.09003 * 109.46772 * 179.22257 * 1 2 3 30 30 H 1.08997 * 109.47041 * 180.77675 * 3 2 1 31 31 H 1.08998 * 109.47234 * 300.77828 * 3 2 1 32 32 H 0.96991 * 120.00277 * 0.02562 * 4 3 2 33 33 H 0.96991 * 120.00265 * 179.97438 * 8 7 5 34 34 H 1.08996 * 110.34449 * 0.02562 * 13 2 1 35 35 H 1.08998 * 110.43665 * 237.78823 * 13 2 1 36 36 H 1.08992 * 110.40719 * 94.91736 * 14 13 2 37 37 H 1.09000 * 110.40697 * 217.35430 * 14 13 2 38 38 H 1.08989 * 109.47247 * 299.99978 * 18 16 15 39 39 H 1.09000 * 109.46921 * 60.00423 * 18 16 15 40 40 H 1.09007 * 108.64853 * 299.35456 * 20 19 18 41 41 H 1.09004 * 108.64821 * 57.13241 * 20 19 18 42 42 H 1.09002 * 110.09993 * 146.74773 * 21 20 19 43 43 H 1.09000 * 110.09656 * 268.35097 * 21 20 19 44 44 H 1.09004 * 111.36717 * 80.61392 * 22 21 20 45 45 H 1.08997 * 111.37211 * 205.35439 * 22 21 20 46 46 H 1.09004 * 110.40486 * 201.62525 * 26 15 14 47 47 H 1.09003 * 110.50809 * 79.25233 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0629 1.4342 0.0000 4 7 1.6010 2.1268 1.2054 5 6 1.9558 3.4312 1.4241 6 1 2.5767 3.9492 0.7080 7 6 1.5186 4.0873 2.5664 8 7 0.7624 3.4559 3.4394 9 14 2.0033 5.8665 2.8651 10 1 1.4995 6.7103 1.7517 11 1 1.4121 6.3324 4.1452 12 1 3.4829 5.9713 2.9353 13 6 2.0664 -0.7714 1.2236 14 6 2.8803 -1.9421 0.6313 15 7 2.3140 -2.1437 -0.7227 16 6 2.0772 -3.3105 -1.3545 17 8 1.6060 -3.3102 -2.4721 18 6 2.3977 -4.6154 -0.6722 19 7 2.0511 -5.7284 -1.5596 20 6 2.9011 -6.2895 -2.6118 21 6 2.2716 -7.4797 -3.3428 22 6 0.7315 -7.2838 -3.2475 23 16 0.6168 -6.5892 -1.5462 24 8 0.7900 -7.5962 -0.5587 25 8 -0.4098 -5.6111 -1.4526 26 6 2.0667 -0.7720 -1.2245 27 1 -0.3634 0.5016 0.8969 28 1 -0.3634 0.5258 -0.8829 29 1 -0.3633 -1.0276 -0.0139 30 1 3.1527 1.4169 -0.0139 31 1 1.6966 1.9580 -0.8829 32 1 1.0444 1.6612 1.8490 33 1 0.4572 3.9143 4.2378 34 1 1.2399 -1.1508 1.8245 35 1 2.7092 -0.1298 1.8262 36 1 3.9355 -1.6769 0.5664 37 1 2.7496 -2.8399 1.2355 38 1 3.4621 -4.6526 -0.4409 39 1 1.8224 -4.6940 0.2503 40 1 3.1162 -5.5074 -3.3401 41 1 3.8414 -6.6125 -2.1651 42 1 2.5846 -7.4862 -4.3869 43 1 2.5613 -8.4123 -2.8586 44 1 0.3744 -6.5747 -3.9943 45 1 0.2046 -8.2349 -3.3236 46 1 1.3223 -0.7870 -2.0206 47 1 2.9938 -0.3227 -1.5807 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324737828.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:06:15 Heat of formation + Delta-G solvation = -100.330373 kcal Electronic energy + Delta-G solvation = -29108.165906 eV Core-core repulsion = 25031.890809 eV Total energy + Delta-G solvation = -4076.275096 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.156 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.24044 -39.42850 -38.33026 -37.72158 -36.98218 -36.41200 -34.44404 -33.97320 -32.05701 -30.58197 -29.41657 -27.78525 -27.25093 -26.26245 -24.34087 -24.04027 -22.87440 -20.72952 -20.16265 -19.72845 -19.17460 -18.31845 -18.12940 -17.77387 -17.04333 -16.84151 -16.57224 -16.47094 -15.80641 -15.64456 -15.46793 -15.37650 -15.05797 -14.77075 -14.53818 -14.30449 -14.08200 -13.92262 -13.83216 -13.65362 -13.40233 -13.24998 -13.09909 -13.00525 -12.84907 -12.76691 -12.73514 -12.43524 -12.39413 -12.14262 -12.05627 -12.01499 -11.68966 -11.54380 -11.42513 -11.35277 -11.18748 -10.89256 -9.91287 -9.70977 -8.94622 -7.91570 -5.19170 -0.79453 1.36063 1.49151 1.51686 1.57643 1.59702 1.99348 2.58465 2.58919 2.91837 3.30580 3.39436 3.42845 3.61630 3.68797 3.74403 3.85616 3.95880 4.03186 4.24029 4.25883 4.31743 4.37590 4.41722 4.42673 4.53883 4.65291 4.69660 4.73309 4.77663 4.84266 4.89749 4.96940 4.99409 5.00962 5.07088 5.11640 5.15600 5.34350 5.40944 5.44543 5.50737 5.53420 6.30614 6.58386 7.13109 7.37951 8.14334 8.38462 9.31700 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.031272 B = 0.002146 C = 0.002113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.145860 B =13046.112231 C =13247.747981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.074 4.074 3 C 0.169 3.831 4 N -0.738 5.738 5 C -0.242 4.242 6 H 0.075 0.925 7 C -0.074 4.074 8 N -0.969 5.969 9 Si 0.971 3.029 10 H -0.282 1.282 11 H -0.297 1.297 12 H -0.276 1.276 13 C -0.124 4.124 14 C 0.104 3.896 15 N -0.621 5.621 16 C 0.505 3.495 17 O -0.571 6.571 18 C 0.145 3.855 19 N -0.976 5.976 20 C 0.071 3.929 21 C -0.120 4.120 22 C -0.556 4.556 23 S 2.542 3.458 24 O -0.983 6.983 25 O -1.005 7.005 26 C 0.123 3.877 27 H 0.044 0.956 28 H 0.048 0.952 29 H 0.050 0.950 30 H 0.031 0.969 31 H 0.015 0.985 32 H 0.377 0.623 33 H 0.250 0.750 34 H 0.067 0.933 35 H 0.077 0.923 36 H 0.098 0.902 37 H 0.108 0.892 38 H 0.150 0.850 39 H 0.114 0.886 40 H 0.070 0.930 41 H 0.104 0.896 42 H 0.138 0.862 43 H 0.115 0.885 44 H 0.150 0.850 45 H 0.169 0.831 46 H 0.066 0.934 47 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.093 -27.154 -14.074 31.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.076 4.076 3 C 0.042 3.958 4 N -0.381 5.381 5 C -0.374 4.374 6 H 0.092 0.908 7 C -0.267 4.267 8 N -0.620 5.620 9 Si 0.800 3.200 10 H -0.208 1.208 11 H -0.224 1.224 12 H -0.202 1.202 13 C -0.162 4.162 14 C -0.017 4.017 15 N -0.356 5.356 16 C 0.293 3.707 17 O -0.449 6.449 18 C 0.017 3.983 19 N -0.815 5.815 20 C -0.054 4.054 21 C -0.159 4.159 22 C -0.692 4.692 23 S 2.644 3.356 24 O -0.973 6.973 25 O -0.994 6.994 26 C -0.001 4.001 27 H 0.063 0.937 28 H 0.067 0.933 29 H 0.069 0.931 30 H 0.049 0.951 31 H 0.033 0.967 32 H 0.210 0.790 33 H 0.059 0.941 34 H 0.085 0.915 35 H 0.096 0.904 36 H 0.116 0.884 37 H 0.126 0.874 38 H 0.168 0.832 39 H 0.132 0.868 40 H 0.089 0.911 41 H 0.122 0.878 42 H 0.156 0.844 43 H 0.133 0.867 44 H 0.168 0.832 45 H 0.187 0.813 46 H 0.084 0.916 47 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 7.246 -27.123 -13.910 31.331 hybrid contribution -0.261 1.507 0.125 1.535 sum 6.985 -25.616 -13.785 29.916 Atomic orbital electron populations 1.21681 0.94576 1.00422 1.01353 1.21539 0.95663 0.94665 0.95701 1.20751 0.96297 0.89915 0.88835 1.42512 1.61606 1.10819 1.23205 1.19578 1.24677 0.89588 1.03529 0.90755 1.25506 1.01298 1.02249 0.97624 1.69801 1.41444 1.37901 1.12814 0.85248 0.77855 0.80361 0.76498 1.20789 1.22382 1.20237 1.22576 1.00306 0.96752 0.96599 1.22666 0.98290 0.99298 0.81493 1.49120 1.62764 1.05066 1.18620 1.21633 0.77327 0.85480 0.86225 1.90649 1.45784 1.87352 1.21148 1.20946 1.06050 0.80398 0.90956 1.56587 1.34743 1.44325 1.45865 1.21876 0.96427 0.96758 0.90361 1.22586 0.88885 0.98462 1.05932 1.30590 1.05977 1.14500 1.18084 1.07109 0.73320 0.75013 0.80209 1.93609 1.85467 1.60411 1.57776 1.93578 1.58358 1.59693 1.87799 1.22232 1.00969 0.81291 0.95599 0.93660 0.93256 0.93091 0.95069 0.96722 0.79018 0.94100 0.91470 0.90439 0.88424 0.87420 0.83215 0.86849 0.91110 0.87817 0.84375 0.86692 0.83229 0.81298 0.91575 0.89607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.27 8.06 71.98 0.58 -3.69 16 2 C -0.07 -2.36 0.73 -51.28 -0.04 -2.40 16 3 C 0.17 6.51 4.91 86.38 0.42 6.93 16 4 N -0.74 -36.36 4.93 -343.46 -1.69 -38.05 16 5 C -0.24 -13.28 9.99 84.03 0.84 -12.44 16 6 H 0.07 3.92 7.83 -2.91 -0.02 3.90 16 7 C -0.07 -4.24 5.50 84.86 0.47 -3.77 16 8 N -0.97 -58.80 13.06 21.65 0.28 -58.51 16 9 Si 0.97 45.89 29.55 68.60 2.03 47.92 16 10 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 11 H -0.30 -14.23 7.11 99.48 0.71 -13.52 16 12 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 13 C -0.12 -3.46 5.78 31.50 0.18 -3.28 16 14 C 0.10 2.01 6.92 86.54 0.60 2.61 16 15 N -0.62 -15.11 3.32 -807.94 -2.68 -17.79 16 16 C 0.51 12.88 7.98 87.66 0.70 13.58 16 17 O -0.57 -18.86 16.70 -3.05 -0.05 -18.91 16 18 C 0.14 2.46 5.70 85.63 0.49 2.95 16 19 N -0.98 -16.45 2.82 -519.61 -1.47 -17.91 16 20 C 0.07 0.65 6.84 86.46 0.59 1.24 16 21 C -0.12 -0.49 6.61 31.54 0.21 -0.28 16 22 C -0.56 -4.49 7.67 72.86 0.56 -3.93 16 23 S 2.54 49.78 6.19 -56.49 -0.35 49.43 16 24 O -0.98 -23.63 18.14 -127.81 -2.32 -25.95 16 25 O -1.00 -30.69 18.04 -127.81 -2.31 -33.00 16 26 C 0.12 3.41 6.14 86.53 0.53 3.94 16 27 H 0.04 1.78 7.01 -2.39 -0.02 1.76 16 28 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 29 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 30 H 0.03 1.16 8.12 -2.39 -0.02 1.14 16 31 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.38 19.73 6.28 -92.72 -0.58 19.15 16 33 H 0.25 14.82 8.31 -92.71 -0.77 14.05 16 34 H 0.07 1.93 7.71 -2.39 -0.02 1.91 16 35 H 0.08 2.45 7.49 -2.39 -0.02 2.43 16 36 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 37 H 0.11 1.43 7.30 -2.39 -0.02 1.41 16 38 H 0.15 1.29 8.14 -2.39 -0.02 1.27 16 39 H 0.11 1.78 7.95 -2.39 -0.02 1.76 16 40 H 0.07 0.79 8.14 -2.38 -0.02 0.77 16 41 H 0.10 0.48 8.14 -2.38 -0.02 0.46 16 42 H 0.14 -0.07 8.14 -2.39 -0.02 -0.09 16 43 H 0.11 0.10 8.14 -2.39 -0.02 0.08 16 44 H 0.15 1.20 8.14 -2.39 -0.02 1.18 16 45 H 0.17 0.40 8.14 -2.39 -0.02 0.38 16 46 H 0.07 2.05 7.60 -2.39 -0.02 2.03 16 47 H 0.09 2.16 7.85 -2.39 -0.02 2.14 16 Total: -1.00 -85.63 389.91 -2.03 -87.66 By element: Atomic # 1 Polarization: 23.24 SS G_CDS: 0.39 Total: 23.63 kcal Atomic # 6 Polarization: -4.66 SS G_CDS: 6.13 Total: 1.47 kcal Atomic # 7 Polarization: -126.71 SS G_CDS: -5.55 Total: -132.26 kcal Atomic # 8 Polarization: -73.18 SS G_CDS: -4.67 Total: -77.86 kcal Atomic # 14 Polarization: 45.89 SS G_CDS: 2.03 Total: 47.92 kcal Atomic # 16 Polarization: 49.78 SS G_CDS: -0.35 Total: 49.43 kcal Total: -85.63 -2.03 -87.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324737828.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.665 kcal (2) G-P(sol) polarization free energy of solvation -85.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds