Wall clock time and date at job start Wed Apr 1 2020 04:15:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47437 * 2 1 4 4 N 1.46499 * 109.45951 * 303.92450 * 3 2 1 5 5 C 1.36932 * 120.00314 * 297.81992 * 4 3 2 6 6 H 1.08006 * 119.99833 * 356.63710 * 5 4 3 7 7 C 1.38810 * 120.00330 * 176.63874 * 5 4 3 8 8 N 1.31617 * 119.99838 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 120.00278 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.46891 * 359.97438 * 9 7 5 11 11 H 1.48493 * 109.47404 * 120.00134 * 9 7 5 12 12 H 1.48497 * 109.46969 * 240.00267 * 9 7 5 13 13 C 1.53038 * 109.45895 * 63.89892 * 3 2 1 14 14 C 1.53196 * 109.31205 * 181.38898 * 13 3 2 15 15 N 1.46927 * 108.77114 * 305.36344 * 14 13 3 16 16 C 1.34777 * 120.62910 * 233.58615 * 15 14 13 17 17 O 1.21286 * 119.99972 * 0.02562 * 16 15 14 18 18 C 1.50706 * 120.00123 * 180.02562 * 16 15 14 19 19 H 1.08999 * 109.76281 * 40.72285 * 18 16 15 20 20 C 1.53733 * 109.70134 * 280.19724 * 18 16 15 21 21 C 1.54917 * 105.97636 * 194.85802 * 20 18 16 22 22 S 1.83173 * 102.70839 * 25.02189 * 21 20 18 23 23 O 1.42099 * 111.27700 * 248.96756 * 22 21 20 24 24 O 1.42107 * 111.27445 * 109.62379 * 22 21 20 25 25 N 1.47989 * 109.76669 * 161.45314 * 18 16 15 26 26 C 1.46924 * 118.74268 * 53.86208 * 15 14 13 27 27 C 1.53039 * 109.46019 * 183.96738 * 3 2 1 28 28 H 1.09000 * 109.47196 * 294.36803 * 1 2 3 29 29 H 1.09001 * 109.46879 * 54.36593 * 1 2 3 30 30 H 1.09002 * 109.47487 * 174.36627 * 1 2 3 31 31 H 1.09000 * 109.46873 * 239.99810 * 2 1 3 32 32 H 1.09004 * 109.46871 * 119.99962 * 2 1 3 33 33 H 0.97001 * 119.99643 * 117.81312 * 4 3 2 34 34 H 0.97003 * 120.00120 * 180.02562 * 8 7 5 35 35 H 1.09003 * 109.50198 * 61.43519 * 13 3 2 36 36 H 1.09002 * 109.49611 * 301.33813 * 13 3 2 37 37 H 1.09000 * 109.58316 * 185.57921 * 14 13 3 38 38 H 1.08990 * 109.70645 * 65.22062 * 14 13 3 39 39 H 1.09006 * 110.25147 * 75.65842 * 20 18 16 40 40 H 1.09006 * 110.07216 * 313.95935 * 20 18 16 41 41 H 1.09000 * 110.76460 * 266.71998 * 21 20 18 42 42 H 1.08998 * 110.92198 * 143.40405 * 21 20 18 43 43 H 0.97001 * 127.75821 * 343.81672 * 25 18 16 44 44 H 1.09004 * 109.58231 * 65.92322 * 26 15 14 45 45 H 1.08998 * 109.59136 * 186.35226 * 26 15 14 46 46 H 1.08997 * 109.49800 * 298.56404 * 27 3 2 47 47 H 1.08998 * 109.49830 * 58.62934 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 1.4759 2.1596 -1.1462 5 6 1.7618 1.7470 -2.4202 6 1 2.4460 0.9271 -2.5815 7 6 1.1722 2.3825 -3.5043 8 7 0.3388 3.3821 -3.3077 9 14 1.5627 1.8201 -5.2423 10 1 2.5223 0.6879 -5.1923 11 1 0.3128 1.3810 -5.9132 12 1 2.1640 2.9447 -6.0031 13 6 1.6115 2.1348 1.2958 14 6 2.0940 3.5886 1.2770 15 7 3.5433 3.6027 1.0361 16 6 4.3721 4.2581 1.8727 17 8 3.9234 4.8434 2.8356 18 6 5.8564 4.2638 1.6118 19 1 6.0426 4.3851 0.5447 20 6 6.4729 2.9417 2.0968 21 6 8.0031 3.1783 2.1482 22 16 8.1232 4.9936 2.3615 23 8 8.6503 5.6158 1.1978 24 8 8.5815 5.3305 3.6638 25 7 6.4918 5.3715 2.3598 26 6 4.0714 2.8939 -0.1375 27 6 3.5672 1.4432 -0.0998 28 1 -0.3633 0.4240 0.9361 29 1 -0.3633 0.5987 -0.8353 30 1 -0.3634 -1.0227 -0.1009 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 0.8999 2.9267 -1.0025 34 1 -0.0735 3.8260 -4.0653 35 1 2.0513 1.6165 2.1479 36 1 0.5248 2.1131 1.3776 37 1 1.8786 4.0575 2.2371 38 1 1.5861 4.1342 0.4818 39 1 6.2402 2.1381 1.3980 40 1 6.0972 2.6958 3.0901 41 1 8.4738 2.8669 1.2157 42 1 8.4489 2.6591 2.9965 43 1 6.0598 6.1411 2.7622 44 1 3.7211 3.3819 -1.0472 45 1 5.1610 2.9043 -0.1111 46 1 3.9886 0.9315 0.7654 47 1 3.8724 0.9289 -1.0111 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327494076.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:15:23 Heat of formation + Delta-G solvation = -80.952492 kcal Electronic energy + Delta-G solvation = -30324.213608 eV Core-core repulsion = 26248.778800 eV Total energy + Delta-G solvation = -4075.434808 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.156 amu Computer time = 1.97 seconds Orbital eigenvalues (eV) -40.52815 -38.45480 -37.32655 -36.62028 -36.09784 -34.96615 -32.70488 -31.98226 -30.97704 -30.38798 -29.18661 -27.28415 -25.03695 -23.91657 -23.30176 -22.45804 -21.62154 -20.09422 -19.56001 -18.42422 -17.77323 -17.48395 -17.14122 -16.41711 -16.24293 -15.64706 -15.27582 -15.19763 -14.61970 -14.30987 -14.14564 -14.04092 -13.95847 -13.72814 -13.60753 -13.06888 -13.02327 -12.64903 -12.37822 -12.36924 -12.28166 -12.22857 -12.08601 -11.80176 -11.68092 -11.35987 -11.18041 -10.97851 -10.92149 -10.87711 -10.73148 -10.43310 -10.27728 -10.18422 -10.02657 -9.74500 -9.60591 -9.49163 -9.00519 -8.39991 -7.04307 -5.86040 -3.14815 -0.04880 2.21327 2.52733 3.03159 3.33963 3.35655 3.41388 3.44800 3.66129 3.95689 4.10535 4.40069 4.48092 4.50049 4.73350 4.88519 5.03511 5.13647 5.20775 5.24554 5.32368 5.39426 5.44996 5.48048 5.61232 5.65174 5.84295 5.86956 6.01724 6.04616 6.10394 6.12028 6.31706 6.37959 6.44525 6.54516 6.65875 6.74650 6.84491 6.91623 6.95241 7.13340 7.52095 7.63175 8.13228 8.31941 9.44185 10.00071 10.35384 11.36097 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.014764 B = 0.003270 C = 0.002990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1896.093317 B = 8560.966240 C = 9363.832861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.122 4.122 3 C 0.202 3.798 4 N -0.713 5.713 5 C -0.233 4.233 6 H 0.070 0.930 7 C -0.009 4.009 8 N -0.929 5.929 9 Si 0.899 3.101 10 H -0.281 1.281 11 H -0.293 1.293 12 H -0.293 1.293 13 C -0.130 4.130 14 C 0.116 3.884 15 N -0.592 5.592 16 C 0.522 3.478 17 O -0.538 6.538 18 C 0.084 3.916 19 H 0.115 0.885 20 C -0.116 4.116 21 C -0.600 4.600 22 S 2.578 3.422 23 O -0.950 6.950 24 O -0.960 6.960 25 N -1.080 6.080 26 C 0.106 3.894 27 C -0.135 4.135 28 H 0.038 0.962 29 H 0.077 0.923 30 H 0.033 0.967 31 H 0.059 0.941 32 H 0.039 0.961 33 H 0.384 0.616 34 H 0.254 0.746 35 H 0.061 0.939 36 H 0.078 0.922 37 H 0.083 0.917 38 H 0.080 0.920 39 H 0.116 0.884 40 H 0.099 0.901 41 H 0.144 0.856 42 H 0.145 0.855 43 H 0.441 0.559 44 H 0.097 0.903 45 H 0.069 0.931 46 H 0.050 0.950 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.300 -3.855 10.967 16.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.162 4.162 3 C 0.110 3.890 4 N -0.355 5.355 5 C -0.364 4.364 6 H 0.088 0.912 7 C -0.205 4.205 8 N -0.578 5.578 9 Si 0.731 3.269 10 H -0.207 1.207 11 H -0.220 1.220 12 H -0.220 1.220 13 C -0.168 4.168 14 C -0.006 4.006 15 N -0.324 5.324 16 C 0.307 3.693 17 O -0.416 6.416 18 C -0.029 4.029 19 H 0.132 0.868 20 C -0.156 4.156 21 C -0.730 4.730 22 S 2.672 3.328 23 O -0.939 6.939 24 O -0.949 6.949 25 N -0.848 5.848 26 C -0.016 4.016 27 C -0.176 4.176 28 H 0.057 0.943 29 H 0.096 0.904 30 H 0.052 0.948 31 H 0.078 0.922 32 H 0.058 0.942 33 H 0.219 0.781 34 H 0.064 0.936 35 H 0.080 0.920 36 H 0.096 0.904 37 H 0.102 0.898 38 H 0.098 0.902 39 H 0.134 0.866 40 H 0.118 0.882 41 H 0.163 0.837 42 H 0.163 0.837 43 H 0.283 0.717 44 H 0.115 0.885 45 H 0.087 0.913 46 H 0.069 0.931 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 11.920 -3.003 11.385 16.754 hybrid contribution -0.660 -0.491 -1.136 1.402 sum 11.260 -3.494 10.249 15.621 Atomic orbital electron populations 1.21670 0.96068 1.00165 1.02038 1.21894 0.96475 0.97970 0.99888 1.19536 0.90715 0.91284 0.87490 1.42483 1.58097 1.34671 1.00233 1.19109 1.21125 1.13150 0.83011 0.91164 1.24683 0.99575 0.98710 0.97572 1.69651 1.33526 1.24835 1.29748 0.86247 0.77381 0.77695 0.85596 1.20667 1.22049 1.22036 1.22118 1.01575 0.95059 0.98067 1.21638 0.78783 0.97637 1.02563 1.48119 1.07695 1.50715 1.25849 1.19849 0.87120 0.79472 0.82876 1.90689 1.76983 1.44605 1.29301 1.21977 0.94816 0.87531 0.98534 0.86760 1.22381 0.90355 0.96972 1.05926 1.30751 1.03939 1.25541 1.12787 1.06161 0.73319 0.78519 0.74830 1.93670 1.77266 1.72407 1.50603 1.93612 1.79724 1.82167 1.39417 1.55325 1.26665 1.32201 1.70631 1.22018 0.97057 0.93815 0.88673 1.22387 0.98972 0.94844 1.01360 0.94258 0.90373 0.94775 0.92182 0.94225 0.78122 0.93583 0.91979 0.90393 0.89837 0.90199 0.86589 0.88226 0.83728 0.83687 0.71658 0.88511 0.91313 0.93142 0.90387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 29. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.29 9.39 37.16 0.35 -1.94 16 2 C -0.12 -1.91 4.78 -26.73 -0.13 -2.03 16 3 C 0.20 3.18 0.43 -131.78 -0.06 3.12 16 4 N -0.71 -14.37 3.06 -47.20 -0.14 -14.51 16 5 C -0.23 -5.40 8.72 -15.06 -0.13 -5.53 16 6 H 0.07 1.60 6.74 -52.48 -0.35 1.25 16 7 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 8 N -0.93 -25.47 13.06 55.49 0.72 -24.74 16 9 Si 0.90 20.62 29.55 -169.99 -5.02 15.60 16 10 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 11 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 12 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 13 C -0.13 -1.83 4.72 -26.61 -0.13 -1.96 16 14 C 0.12 1.71 6.15 -3.71 -0.02 1.69 16 15 N -0.59 -8.09 2.97 -172.50 -0.51 -8.60 16 16 C 0.52 7.06 6.95 -10.98 -0.08 6.98 16 17 O -0.54 -8.87 15.70 5.55 0.09 -8.78 16 18 C 0.08 0.85 2.38 -67.88 -0.16 0.69 16 19 H 0.11 1.02 6.85 -51.93 -0.36 0.66 16 20 C -0.12 -0.84 5.85 -25.34 -0.15 -0.98 16 21 C -0.60 -3.37 7.49 38.17 0.29 -3.08 16 22 S 2.58 24.81 6.41 -107.50 -0.69 24.12 16 23 O -0.95 -12.23 18.14 -57.41 -1.04 -13.27 16 24 O -0.96 -12.42 18.14 -57.41 -1.04 -13.46 16 25 N -1.08 -11.38 6.62 -4.70 -0.03 -11.42 16 26 C 0.11 1.40 5.81 -3.49 -0.02 1.38 16 27 C -0.14 -1.85 4.69 -26.39 -0.12 -1.98 16 28 H 0.04 0.57 6.79 -51.93 -0.35 0.22 16 29 H 0.08 1.53 7.31 -51.93 -0.38 1.15 16 30 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.06 1.02 7.60 -51.93 -0.39 0.63 16 32 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.38 8.62 6.54 -40.82 -0.27 8.35 16 34 H 0.25 6.92 8.31 -40.82 -0.34 6.58 16 35 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 36 H 0.08 1.12 6.60 -51.93 -0.34 0.78 16 37 H 0.08 1.24 7.01 -51.93 -0.36 0.88 16 38 H 0.08 1.34 6.99 -51.93 -0.36 0.97 16 39 H 0.12 0.66 6.99 -51.93 -0.36 0.30 16 40 H 0.10 0.72 8.09 -51.93 -0.42 0.30 16 41 H 0.14 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.14 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.44 4.76 8.53 -40.75 -0.35 4.41 16 44 H 0.10 1.60 7.72 -51.93 -0.40 1.20 16 45 H 0.07 0.67 4.62 -51.93 -0.24 0.43 16 46 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 47 H 0.08 1.15 7.14 -51.93 -0.37 0.78 16 LS Contribution 370.50 15.07 5.58 5.58 Total: -1.00 -32.95 370.50 -9.53 -42.48 By element: Atomic # 1 Polarization: 17.96 SS G_CDS: -6.99 Total: 10.98 kcal Atomic # 6 Polarization: -3.52 SS G_CDS: -0.46 Total: -3.97 kcal Atomic # 7 Polarization: -59.31 SS G_CDS: 0.04 Total: -59.28 kcal Atomic # 8 Polarization: -33.51 SS G_CDS: -2.00 Total: -35.51 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Atomic # 16 Polarization: 24.81 SS G_CDS: -0.69 Total: 24.12 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -32.95 -9.53 -42.48 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327494076.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.474 kcal (2) G-P(sol) polarization free energy of solvation -32.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.97 seconds