Wall clock time and date at job start Wed Apr 1 2020 04:15:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47437 * 2 1 4 4 N 1.46499 * 109.45951 * 303.92450 * 3 2 1 5 5 C 1.36932 * 120.00314 * 297.81992 * 4 3 2 6 6 H 1.08006 * 119.99833 * 356.63710 * 5 4 3 7 7 C 1.38810 * 120.00330 * 176.63874 * 5 4 3 8 8 N 1.31617 * 119.99838 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 120.00278 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.46891 * 359.97438 * 9 7 5 11 11 H 1.48493 * 109.47404 * 120.00134 * 9 7 5 12 12 H 1.48497 * 109.46969 * 240.00267 * 9 7 5 13 13 C 1.53038 * 109.45895 * 63.89892 * 3 2 1 14 14 C 1.53196 * 109.31205 * 181.38898 * 13 3 2 15 15 N 1.46927 * 108.77114 * 305.36344 * 14 13 3 16 16 C 1.34777 * 120.62910 * 233.58615 * 15 14 13 17 17 O 1.21286 * 119.99972 * 0.02562 * 16 15 14 18 18 C 1.50706 * 120.00123 * 180.02562 * 16 15 14 19 19 H 1.08999 * 109.76281 * 40.72285 * 18 16 15 20 20 C 1.53733 * 109.70134 * 280.19724 * 18 16 15 21 21 C 1.54917 * 105.97636 * 194.85802 * 20 18 16 22 22 S 1.83173 * 102.70839 * 25.02189 * 21 20 18 23 23 O 1.42099 * 111.27700 * 248.96756 * 22 21 20 24 24 O 1.42107 * 111.27445 * 109.62379 * 22 21 20 25 25 N 1.47989 * 109.76669 * 161.45314 * 18 16 15 26 26 C 1.46924 * 118.74268 * 53.86208 * 15 14 13 27 27 C 1.53039 * 109.46019 * 183.96738 * 3 2 1 28 28 H 1.09000 * 109.47196 * 294.36803 * 1 2 3 29 29 H 1.09001 * 109.46879 * 54.36593 * 1 2 3 30 30 H 1.09002 * 109.47487 * 174.36627 * 1 2 3 31 31 H 1.09000 * 109.46873 * 239.99810 * 2 1 3 32 32 H 1.09004 * 109.46871 * 119.99962 * 2 1 3 33 33 H 0.97001 * 119.99643 * 117.81312 * 4 3 2 34 34 H 0.97003 * 120.00120 * 180.02562 * 8 7 5 35 35 H 1.09003 * 109.50198 * 61.43519 * 13 3 2 36 36 H 1.09002 * 109.49611 * 301.33813 * 13 3 2 37 37 H 1.09000 * 109.58316 * 185.57921 * 14 13 3 38 38 H 1.08990 * 109.70645 * 65.22062 * 14 13 3 39 39 H 1.09006 * 110.25147 * 75.65842 * 20 18 16 40 40 H 1.09006 * 110.07216 * 313.95935 * 20 18 16 41 41 H 1.09000 * 110.76460 * 266.71998 * 21 20 18 42 42 H 1.08998 * 110.92198 * 143.40405 * 21 20 18 43 43 H 0.97001 * 127.75821 * 343.81672 * 25 18 16 44 44 H 1.09004 * 109.58231 * 65.92322 * 26 15 14 45 45 H 1.08998 * 109.59136 * 186.35226 * 26 15 14 46 46 H 1.08997 * 109.49800 * 298.56404 * 27 3 2 47 47 H 1.08998 * 109.49830 * 58.62934 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 1.4759 2.1596 -1.1462 5 6 1.7618 1.7470 -2.4202 6 1 2.4460 0.9271 -2.5815 7 6 1.1722 2.3825 -3.5043 8 7 0.3388 3.3821 -3.3077 9 14 1.5627 1.8201 -5.2423 10 1 2.5223 0.6879 -5.1923 11 1 0.3128 1.3810 -5.9132 12 1 2.1640 2.9447 -6.0031 13 6 1.6115 2.1348 1.2958 14 6 2.0940 3.5886 1.2770 15 7 3.5433 3.6027 1.0361 16 6 4.3721 4.2581 1.8727 17 8 3.9234 4.8434 2.8356 18 6 5.8564 4.2638 1.6118 19 1 6.0426 4.3851 0.5447 20 6 6.4729 2.9417 2.0968 21 6 8.0031 3.1783 2.1482 22 16 8.1232 4.9936 2.3615 23 8 8.6503 5.6158 1.1978 24 8 8.5815 5.3305 3.6638 25 7 6.4918 5.3715 2.3598 26 6 4.0714 2.8939 -0.1375 27 6 3.5672 1.4432 -0.0998 28 1 -0.3633 0.4240 0.9361 29 1 -0.3633 0.5987 -0.8353 30 1 -0.3634 -1.0227 -0.1009 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 0.8999 2.9267 -1.0025 34 1 -0.0735 3.8260 -4.0653 35 1 2.0513 1.6165 2.1479 36 1 0.5248 2.1131 1.3776 37 1 1.8786 4.0575 2.2371 38 1 1.5861 4.1342 0.4818 39 1 6.2402 2.1381 1.3980 40 1 6.0972 2.6958 3.0901 41 1 8.4738 2.8669 1.2157 42 1 8.4489 2.6591 2.9965 43 1 6.0598 6.1411 2.7622 44 1 3.7211 3.3819 -1.0472 45 1 5.1610 2.9043 -0.1111 46 1 3.9886 0.9315 0.7654 47 1 3.8724 0.9289 -1.0111 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327494076.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:15:22 Heat of formation + Delta-G solvation = -107.167492 kcal Electronic energy + Delta-G solvation = -30325.350376 eV Core-core repulsion = 26248.778800 eV Total energy + Delta-G solvation = -4076.571576 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.156 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.60049 -39.64054 -38.17909 -37.47144 -36.94099 -36.24129 -34.40711 -32.64301 -32.12589 -31.69301 -30.74018 -28.15405 -26.26454 -25.54991 -24.28235 -23.42377 -22.72397 -20.99416 -20.53879 -19.55707 -18.90357 -18.79065 -18.29050 -17.31814 -17.15615 -16.63340 -16.36194 -16.23721 -15.96545 -15.56143 -15.33610 -15.28338 -15.01293 -14.89862 -14.37962 -14.26188 -14.08861 -13.85251 -13.55035 -13.35839 -13.25792 -13.10062 -13.03047 -12.93356 -12.85133 -12.76415 -12.53246 -12.31075 -12.22123 -12.06347 -11.96955 -11.73422 -11.56917 -11.46905 -11.38253 -10.99883 -10.86260 -10.75869 -10.48021 -9.59642 -8.78878 -7.79458 -5.03062 -0.73866 1.37358 1.51360 1.54494 1.59237 1.61087 2.01119 2.66298 2.66581 2.92137 3.35919 3.39644 3.56416 3.65092 3.81614 3.92009 3.99533 4.00863 4.15678 4.24453 4.27123 4.33488 4.47789 4.63749 4.67704 4.73330 4.77349 4.81393 4.83252 4.87442 4.90912 4.98094 5.12798 5.20937 5.26116 5.32608 5.42954 5.46628 5.62248 5.70199 5.73162 5.81756 6.05036 6.42887 6.45897 7.06502 7.50910 8.29087 8.50550 9.44561 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.014764 B = 0.003270 C = 0.002990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1896.093317 B = 8560.966240 C = 9363.832861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.118 4.118 3 C 0.191 3.809 4 N -0.718 5.718 5 C -0.195 4.195 6 H 0.081 0.919 7 C -0.076 4.076 8 N -0.971 5.971 9 Si 0.948 3.052 10 H -0.263 1.263 11 H -0.309 1.309 12 H -0.306 1.306 13 C -0.119 4.119 14 C 0.119 3.881 15 N -0.590 5.590 16 C 0.521 3.479 17 O -0.573 6.573 18 C 0.079 3.921 19 H 0.129 0.871 20 C -0.118 4.118 21 C -0.558 4.558 22 S 2.573 3.427 23 O -0.991 6.991 24 O -1.001 7.001 25 N -1.090 6.090 26 C 0.108 3.892 27 C -0.131 4.131 28 H 0.052 0.948 29 H 0.035 0.965 30 H 0.045 0.955 31 H 0.045 0.955 32 H 0.073 0.927 33 H 0.369 0.631 34 H 0.242 0.758 35 H 0.087 0.913 36 H 0.071 0.929 37 H 0.080 0.920 38 H 0.050 0.950 39 H 0.146 0.854 40 H 0.104 0.896 41 H 0.178 0.822 42 H 0.175 0.825 43 H 0.436 0.564 44 H 0.057 0.943 45 H 0.112 0.888 46 H 0.088 0.912 47 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.720 -7.156 12.268 19.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.158 4.158 3 C 0.101 3.899 4 N -0.358 5.358 5 C -0.328 4.328 6 H 0.098 0.902 7 C -0.267 4.267 8 N -0.624 5.624 9 Si 0.781 3.219 10 H -0.187 1.187 11 H -0.238 1.238 12 H -0.234 1.234 13 C -0.157 4.157 14 C -0.004 4.004 15 N -0.322 5.322 16 C 0.308 3.692 17 O -0.452 6.452 18 C -0.033 4.033 19 H 0.146 0.854 20 C -0.158 4.158 21 C -0.693 4.693 22 S 2.672 3.328 23 O -0.981 6.981 24 O -0.991 6.991 25 N -0.856 5.856 26 C -0.014 4.014 27 C -0.171 4.171 28 H 0.071 0.929 29 H 0.054 0.946 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.091 0.909 33 H 0.202 0.798 34 H 0.051 0.949 35 H 0.105 0.895 36 H 0.090 0.910 37 H 0.098 0.902 38 H 0.068 0.932 39 H 0.164 0.836 40 H 0.122 0.878 41 H 0.196 0.804 42 H 0.193 0.807 43 H 0.277 0.723 44 H 0.076 0.924 45 H 0.130 0.870 46 H 0.107 0.893 47 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 14.395 -6.321 12.711 20.217 hybrid contribution -1.433 0.465 -1.426 2.074 sum 12.962 -5.856 11.285 18.156 Atomic orbital electron populations 1.21598 0.96852 1.00164 1.00936 1.21859 0.95719 0.97432 1.00775 1.19891 0.92332 0.91188 0.86445 1.42644 1.57826 1.34500 1.00785 1.19422 1.18271 1.11087 0.83982 0.90152 1.25238 1.01178 0.99975 1.00352 1.69795 1.36115 1.27026 1.29453 0.85422 0.76623 0.77292 0.82592 1.18676 1.23771 1.23423 1.22027 1.01379 0.94363 0.97941 1.21448 0.79809 0.97937 1.01199 1.48121 1.07103 1.50920 1.26052 1.20407 0.88473 0.78279 0.82044 1.90678 1.77932 1.45773 1.30831 1.22238 0.92314 0.89224 0.99552 0.85380 1.22554 0.90736 0.95510 1.07007 1.30571 1.03444 1.19283 1.15972 1.06147 0.72439 0.80956 0.73272 1.93618 1.77860 1.75239 1.51358 1.93559 1.80240 1.84263 1.40998 1.55384 1.27029 1.32468 1.70736 1.22021 0.99495 0.93050 0.86809 1.22335 0.96696 0.95235 1.02787 0.92906 0.94612 0.93560 0.93573 0.90893 0.79807 0.94941 0.89494 0.91043 0.90174 0.93188 0.83630 0.87770 0.80378 0.80693 0.72335 0.92417 0.86999 0.89339 0.90963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.22 9.39 71.98 0.68 -3.54 16 2 C -0.12 -3.30 4.78 30.59 0.15 -3.15 16 3 C 0.19 5.57 0.43 3.63 0.00 5.57 16 4 N -0.72 -28.83 3.06 -303.23 -0.93 -29.76 16 5 C -0.20 -8.98 8.72 84.03 0.73 -8.25 16 6 H 0.08 3.51 6.74 -2.91 -0.02 3.49 16 7 C -0.08 -3.93 5.50 84.86 0.47 -3.46 16 8 N -0.97 -55.48 13.06 21.65 0.28 -55.19 16 9 Si 0.95 43.07 29.55 68.60 2.03 45.09 16 10 H -0.26 -10.92 7.11 99.48 0.71 -10.21 16 11 H -0.31 -14.69 7.11 99.48 0.71 -13.98 16 12 H -0.31 -14.37 7.11 99.48 0.71 -13.66 16 13 C -0.12 -3.10 4.72 30.67 0.14 -2.95 16 14 C 0.12 3.46 6.15 86.36 0.53 3.99 16 15 N -0.59 -15.00 2.97 -818.05 -2.43 -17.43 16 16 C 0.52 13.08 6.95 87.66 0.61 13.69 16 17 O -0.57 -18.45 15.70 -3.05 -0.05 -18.50 16 18 C 0.08 1.36 2.38 44.21 0.11 1.47 16 19 H 0.13 1.84 6.85 -2.39 -0.02 1.83 16 20 C -0.12 -1.05 5.85 31.50 0.18 -0.86 16 21 C -0.56 -3.19 7.49 72.64 0.54 -2.65 16 22 S 2.57 45.15 6.41 -56.49 -0.36 44.79 16 23 O -0.99 -24.66 18.14 -127.78 -2.32 -26.98 16 24 O -1.00 -25.32 18.14 -127.78 -2.32 -27.63 16 25 N -1.09 -21.76 6.62 -168.77 -1.12 -22.87 16 26 C 0.11 2.52 5.81 86.51 0.50 3.03 16 27 C -0.13 -3.03 4.69 30.82 0.14 -2.88 16 28 H 0.05 1.44 6.79 -2.39 -0.02 1.43 16 29 H 0.03 1.39 7.31 -2.39 -0.02 1.37 16 30 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.05 1.42 7.60 -2.39 -0.02 1.40 16 32 H 0.07 1.60 8.14 -2.38 -0.02 1.58 16 33 H 0.37 17.12 6.54 -92.71 -0.61 16.52 16 34 H 0.24 13.85 8.31 -92.71 -0.77 13.08 16 35 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 36 H 0.07 1.96 6.60 -2.39 -0.02 1.95 16 37 H 0.08 2.38 7.01 -2.39 -0.02 2.36 16 38 H 0.05 1.75 6.99 -2.39 -0.02 1.73 16 39 H 0.15 0.54 6.99 -2.38 -0.02 0.52 16 40 H 0.10 0.95 8.09 -2.38 -0.02 0.93 16 41 H 0.18 0.04 8.14 -2.39 -0.02 0.02 16 42 H 0.18 0.19 8.14 -2.39 -0.02 0.17 16 43 H 0.44 9.56 8.53 -92.75 -0.79 8.77 16 44 H 0.06 1.84 7.72 -2.39 -0.02 1.83 16 45 H 0.11 1.62 4.62 -2.39 -0.01 1.61 16 46 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 47 H 0.07 1.81 7.14 -2.39 -0.02 1.79 16 Total: -1.00 -76.61 370.50 -2.80 -79.41 By element: Atomic # 1 Polarization: 29.46 SS G_CDS: -0.38 Total: 29.08 kcal Atomic # 6 Polarization: -4.80 SS G_CDS: 4.79 Total: -0.01 kcal Atomic # 7 Polarization: -121.07 SS G_CDS: -4.19 Total: -125.26 kcal Atomic # 8 Polarization: -68.43 SS G_CDS: -4.68 Total: -73.11 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.09 kcal Atomic # 16 Polarization: 45.15 SS G_CDS: -0.36 Total: 44.79 kcal Total: -76.61 -2.80 -79.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327494076.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.756 kcal (2) G-P(sol) polarization free energy of solvation -76.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds