Wall clock time and date at job start Wed Apr 1 2020 02:50:58
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50698 * 1
3 3 C 1.38780 * 120.06668 * 2 1
4 4 N 1.39922 * 120.03788 * 0.02562 * 3 2 1
5 5 C 1.34782 * 120.00145 * 204.83312 * 4 3 2
6 6 O 1.21283 * 119.99883 * 5.52018 * 5 4 3
7 7 C 1.50696 * 120.00061 * 185.51790 * 5 4 3
8 8 C 1.53001 * 109.47036 * 179.97438 * 7 5 4
9 9 C 1.53001 * 109.47269 * 180.02562 * 8 7 5
10 10 C 1.50699 * 109.47403 * 179.97438 * 9 8 7
11 11 H 1.07997 * 119.99970 * 0.02562 * 10 9 8
12 12 C 1.37878 * 119.99925 * 179.97438 * 10 9 8
13 13 N 1.31506 * 120.00378 * 359.97438 * 12 10 9
14 14 Si 1.86808 * 119.99778 * 180.02562 * 12 10 9
15 15 H 1.48498 * 109.47248 * 59.99545 * 14 12 10
16 16 H 1.48493 * 109.47160 * 179.97438 * 14 12 10
17 17 H 1.48507 * 109.46700 * 299.99892 * 14 12 10
18 18 C 1.38892 * 119.92584 * 179.97438 * 3 2 1
19 19 C 1.38183 * 120.05835 * 359.97438 * 18 3 2
20 20 C 1.38148 * 120.13430 * 359.79037 * 19 18 3
21 21 C 1.38678 * 120.06621 * 179.97438 * 2 1 3
22 22 N 1.40200 * 120.03257 * 359.97438 * 21 2 1
23 23 C 1.34773 * 124.17453 * 270.00355 * 22 21 2
24 24 O 1.21235 * 127.15886 * 359.97438 * 23 22 21
25 25 C 1.51584 * 105.68041 * 180.26130 * 23 22 21
26 26 N 1.47307 * 103.59565 * 359.65710 * 25 23 22
27 27 C 1.33785 * 124.18143 * 90.04148 * 22 21 2
28 28 O 1.21541 * 123.77000 * 359.96755 * 27 22 21
29 29 H 1.09003 * 109.46859 * 270.01613 * 1 2 3
30 30 H 1.08998 * 109.47677 * 30.01926 * 1 2 3
31 31 H 1.09001 * 109.47280 * 150.02565 * 1 2 3
32 32 H 0.97005 * 120.00259 * 24.82714 * 4 3 2
33 33 H 1.08997 * 109.47529 * 300.00028 * 7 5 4
34 34 H 1.09002 * 109.47225 * 60.00070 * 7 5 4
35 35 H 1.09006 * 109.47424 * 299.99932 * 8 7 5
36 36 H 1.09004 * 109.47443 * 60.00108 * 8 7 5
37 37 H 1.09003 * 109.46970 * 299.99764 * 9 8 7
38 38 H 1.09002 * 109.47311 * 60.00028 * 9 8 7
39 39 H 0.97000 * 120.00111 * 180.02562 * 13 12 10
40 40 H 1.07996 * 119.97210 * 179.97438 * 18 3 2
41 41 H 1.08000 * 119.92946 * 180.02562 * 19 18 3
42 42 H 1.08004 * 119.96060 * 180.22881 * 20 19 18
43 43 H 1.08999 * 110.59656 * 118.30011 * 25 23 22
44 44 H 1.08997 * 110.59988 * 241.24201 * 25 23 22
45 45 H 0.97003 * 126.69512 * 180.08492 * 26 25 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.2023 1.2011 0.0000
4 7 1.5049 2.4141 0.0005
5 6 2.0871 3.5264 -0.4896
6 8 3.1748 3.4573 -1.0219
7 6 1.3867 4.8559 -0.3764
8 6 2.2567 5.9459 -1.0059
9 6 1.5459 7.2958 -0.8904
10 6 2.4030 8.3695 -1.5099
11 1 3.3588 8.1144 -1.9430
12 6 1.9663 9.6772 -1.5246
13 7 0.8017 9.9876 -0.9985
14 14 3.0285 11.0080 -2.2931
15 1 3.2602 10.6909 -3.7252
16 1 2.3381 12.3180 -2.1820
17 1 4.3314 11.0727 -1.5834
18 6 3.5912 1.1976 0.0005
19 6 4.2804 0.0000 0.0016
20 6 3.5907 -1.1971 0.0065
21 6 2.2018 -1.2002 0.0005
22 7 1.5029 -2.4156 0.0016
23 6 1.1258 -3.0710 1.1172
24 8 1.3200 -2.7341 2.2655
25 6 0.4148 -4.3209 0.6375
26 7 0.4724 -4.2103 -0.8303
27 6 1.1284 -3.0683 -1.1045
28 8 1.3557 -2.6736 -2.2314
29 1 -0.3633 0.0003 1.0277
30 1 -0.3634 0.8898 -0.5141
31 1 -0.3634 -0.8902 -0.5134
32 1 0.6023 2.4545 0.3536
33 1 0.4302 4.8083 -0.8969
34 1 1.2171 5.0889 0.6748
35 1 3.2130 5.9935 -0.4850
36 1 2.4267 5.7131 -2.0572
37 1 0.5894 7.2485 -1.4111
38 1 1.3762 7.5284 0.1609
39 1 0.4944 10.9075 -1.0092
40 1 4.1330 2.1318 0.0001
41 1 5.3604 -0.0003 0.0024
42 1 4.1322 -2.1315 0.0111
43 1 0.9386 -5.2143 0.9774
44 1 -0.6201 -4.3285 0.9794
45 1 0.1114 -4.8401 -1.4736
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001329016547.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 02:50:58
Heat of formation + Delta-G solvation = -50.435361 kcal
Electronic energy + Delta-G solvation = -29231.048774 eV
Core-core repulsion = 25021.493337 eV
Total energy + Delta-G solvation = -4209.555437 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 345.152 amu
Computer time = 0.88 seconds
Orbital eigenvalues (eV)
-43.04586 -40.70587 -39.03724 -38.77601 -36.55776 -35.58493 -34.56804 -34.25312
-32.40266 -32.05799 -29.82656 -28.31495 -27.86251 -27.08654 -24.44857 -23.75978
-23.28348 -21.93602 -21.39015 -20.22241 -19.84272 -18.69704 -18.03007 -17.61455
-17.16185 -16.70905 -16.23866 -15.95192 -15.85465 -15.77307 -15.48566 -15.05312
-14.67091 -14.57954 -14.44473 -14.17615 -13.88603 -13.77103 -13.62325 -13.38792
-12.86150 -12.39342 -12.30060 -12.00593 -11.90631 -11.82527 -11.44030 -11.42356
-10.87890 -10.80002 -10.67599 -10.57007 -10.55398 -10.42213 -10.07257 -9.74627
-9.70928 -9.32711 -9.07356 -8.94818 -8.32994 -8.19877 -5.98701 -4.00303
0.90876 1.04036 1.12300 1.66154 2.48474 2.58458 2.68370 3.00972
3.36384 3.39885 3.41156 3.43704 3.54795 4.37908 4.38115 4.45391
4.48513 4.59267 4.73189 4.83547 4.92123 4.94574 5.17083 5.23253
5.28834 5.35664 5.37403 5.58837 5.60738 5.61795 5.78764 6.01338
6.06988 6.16277 6.20097 6.21596 6.32203 6.49821 6.66186 6.75778
6.86579 6.92382 7.11262 7.31671 7.65634 7.68145 7.80372 8.01221
8.16404 8.44824 9.06374 9.63736 11.12685
Molecular weight = 345.15amu
Principal moments of inertia in cm(-1)
A = 0.026505 B = 0.001841 C = 0.001816
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1056.152458 B =15208.199892 C =15415.398996
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.114 4.114
2 C -0.101 4.101
3 C 0.168 3.832
4 N -0.677 5.677
5 C 0.513 3.487
6 O -0.511 6.511
7 C -0.137 4.137
8 C -0.096 4.096
9 C 0.021 3.979
10 C -0.519 4.519
11 H 0.056 0.944
12 C 0.056 3.944
13 N -0.897 5.897
14 Si 0.893 3.107
15 H -0.277 1.277
16 H -0.288 1.288
17 H -0.277 1.277
18 C -0.113 4.113
19 C -0.092 4.092
20 C -0.117 4.117
21 C 0.139 3.861
22 N -0.528 5.528
23 C 0.519 3.481
24 O -0.456 6.456
25 C 0.066 3.934
26 N -0.729 5.729
27 C 0.700 3.300
28 O -0.526 6.526
29 H 0.075 0.925
30 H 0.074 0.926
31 H 0.063 0.937
32 H 0.411 0.589
33 H 0.093 0.907
34 H 0.094 0.906
35 H 0.056 0.944
36 H 0.056 0.944
37 H 0.016 0.984
38 H 0.016 0.984
39 H 0.261 0.739
40 H 0.156 0.844
41 H 0.136 0.864
42 H 0.125 0.875
43 H 0.126 0.874
44 H 0.126 0.874
45 H 0.443 0.557
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.646 -33.813 6.284 34.585
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.171 4.171
2 C -0.105 4.105
3 C 0.071 3.929
4 N -0.322 5.322
5 C 0.303 3.697
6 O -0.385 6.385
7 C -0.177 4.177
8 C -0.134 4.134
9 C -0.016 4.016
10 C -0.558 4.558
11 H 0.074 0.926
12 C -0.145 4.145
13 N -0.537 5.537
14 Si 0.721 3.279
15 H -0.202 1.202
16 H -0.213 1.213
17 H -0.202 1.202
18 C -0.133 4.133
19 C -0.112 4.112
20 C -0.138 4.138
21 C 0.050 3.950
22 N -0.272 5.272
23 C 0.307 3.693
24 O -0.324 6.324
25 C -0.062 4.062
26 N -0.395 5.395
27 C 0.400 3.600
28 O -0.397 6.397
29 H 0.093 0.907
30 H 0.092 0.908
31 H 0.082 0.918
32 H 0.248 0.752
33 H 0.111 0.889
34 H 0.113 0.887
35 H 0.075 0.925
36 H 0.075 0.925
37 H 0.034 0.966
38 H 0.035 0.965
39 H 0.070 0.930
40 H 0.173 0.827
41 H 0.153 0.847
42 H 0.143 0.857
43 H 0.144 0.856
44 H 0.144 0.856
45 H 0.288 0.712
Dipole moment (debyes) X Y Z Total
from point charges -2.735 -33.123 5.975 33.768
hybrid contribution -0.205 0.333 -0.496 0.632
sum -2.940 -32.789 5.479 33.374
Atomic orbital electron populations
1.20683 0.90610 1.03323 1.02455 1.19506 0.96285 0.90768 1.03954
1.17424 0.91494 0.84642 0.99305 1.43857 1.19069 1.06985 1.62262
1.21569 0.86335 0.85754 0.76029 1.90650 1.21015 1.86033 1.40814
1.21903 1.01066 0.90686 1.04069 1.21482 0.97909 0.94200 0.99810
1.19126 0.95659 0.89659 0.97195 1.21216 1.04373 0.92408 1.37754
0.92602 1.25019 0.95146 0.98769 0.95570 1.69944 1.19366 1.18844
1.45529 0.86644 0.80533 0.80852 0.79907 1.20225 1.21334 1.20216
1.21646 0.92473 1.00316 0.98880 1.20932 1.00297 0.90961 0.98967
1.21042 0.91989 0.99117 1.01609 1.16700 0.90056 0.81817 1.06397
1.43649 1.53317 1.21663 1.08526 1.21064 0.78225 0.85278 0.84773
1.90855 1.53160 1.70564 1.17774 1.22480 1.04166 0.98203 0.81362
1.45391 1.61666 1.24678 1.07744 1.15889 0.78904 0.81030 0.84137
1.91080 1.58813 1.69706 1.20109 0.90663 0.90759 0.91802 0.75203
0.88912 0.88742 0.92509 0.92508 0.96557 0.96540 0.92990 0.82705
0.84660 0.85730 0.85629 0.85629 0.71213
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.11 -1.06 9.20 36.00 0.33 -0.72 16
2 C -0.10 -1.20 5.91 -104.26 -0.62 -1.82 16
3 C 0.17 2.19 6.41 -83.72 -0.54 1.66 16
4 N -0.68 -8.26 4.97 -9.88 -0.05 -8.31 16
5 C 0.51 7.87 7.63 -10.99 -0.08 7.79 16
6 O -0.51 -9.54 13.14 5.55 0.07 -9.47 16
7 C -0.14 -2.14 5.70 -27.88 -0.16 -2.30 16
8 C -0.10 -2.00 4.44 -26.73 -0.12 -2.12 16
9 C 0.02 0.52 4.97 -27.88 -0.14 0.39 16
10 C -0.52 -14.88 9.11 -34.44 -0.31 -15.20 16
11 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16
12 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16
13 N -0.90 -26.91 13.29 55.43 0.74 -26.17 16
14 Si 0.89 21.97 29.54 -169.99 -5.02 16.95 16
15 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16
16 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16
17 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16
18 C -0.11 -1.53 8.72 -39.36 -0.34 -1.87 16
19 C -0.09 -1.05 10.03 -39.63 -0.40 -1.45 16
20 C -0.12 -1.32 9.96 -39.37 -0.39 -1.71 16
21 C 0.14 1.64 5.02 -83.62 -0.42 1.22 16
22 N -0.53 -5.00 1.75 -64.37 -0.11 -5.11 16
23 C 0.52 3.94 8.28 -10.55 -0.09 3.85 16
24 O -0.46 -4.88 17.82 5.60 0.10 -4.78 16
25 C 0.07 0.16 7.97 -4.32 -0.03 0.12 16
26 N -0.73 -2.99 6.58 -65.74 -0.43 -3.43 16
27 C 0.70 6.52 7.99 -88.03 -0.70 5.82 16
28 O -0.53 -7.23 17.64 5.33 0.09 -7.13 16
29 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16
30 H 0.07 0.63 6.99 -51.93 -0.36 0.27 16
31 H 0.06 0.59 6.96 -51.93 -0.36 0.23 16
32 H 0.41 3.72 7.40 -40.82 -0.30 3.42 16
33 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16
34 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16
35 H 0.06 1.22 8.10 -51.93 -0.42 0.80 16
36 H 0.06 1.24 8.10 -51.93 -0.42 0.82 16
37 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16
38 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16
39 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16
40 H 0.16 2.31 5.78 -52.49 -0.30 2.01 16
41 H 0.14 1.20 8.06 -52.49 -0.42 0.78 16
42 H 0.12 1.15 8.06 -52.48 -0.42 0.73 16
43 H 0.13 -0.01 8.14 -51.93 -0.42 -0.44 16
44 H 0.13 -0.01 8.14 -51.93 -0.42 -0.43 16
45 H 0.44 0.72 8.96 -40.82 -0.37 0.35 16
LS Contribution 384.33 15.07 5.79 5.79
Total: -1.00 -38.14 384.33 -8.81 -46.96
By element:
Atomic # 1 Polarization: 5.42 SS G_CDS: -5.88 Total: -0.46 kcal
Atomic # 6 Polarization: -0.72 SS G_CDS: -4.11 Total: -4.83 kcal
Atomic # 7 Polarization: -43.16 SS G_CDS: 0.14 Total: -43.02 kcal
Atomic # 8 Polarization: -21.65 SS G_CDS: 0.27 Total: -21.39 kcal
Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal
Total LS contribution 5.79 Total: 5.79 kcal
Total: -38.14 -8.81 -46.96 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001329016547.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -3.477 kcal
(2) G-P(sol) polarization free energy of solvation -38.144 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.621 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.815 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.959 kcal
(6) G-S(sol) free energy of system = (1) + (5) -50.435 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.88 seconds