Wall clock time and date at job start Wed Apr 1 2020 03:02:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34233 * 116.99902 * 2 1 4 4 O 1.20834 * 119.99574 * 0.02562 * 3 2 1 5 5 C 1.50698 * 120.00170 * 180.02562 * 3 2 1 6 6 C 1.53003 * 109.47241 * 180.02562 * 5 3 2 7 7 N 1.46494 * 109.47196 * 184.74911 * 6 5 3 8 8 C 1.36968 * 120.00141 * 93.54469 * 7 6 5 9 9 H 1.08002 * 120.00245 * 233.30819 * 8 7 6 10 10 C 1.38915 * 119.99828 * 53.03226 * 8 7 6 11 11 N 1.31463 * 120.00053 * 195.73189 * 10 8 7 12 12 Si 1.86800 * 120.00100 * 15.73340 * 10 8 7 13 13 H 1.48494 * 109.47275 * 93.96333 * 12 10 8 14 14 H 1.48501 * 109.47010 * 213.96043 * 12 10 8 15 15 H 1.48496 * 109.47233 * 333.95999 * 12 10 8 16 16 C 1.34783 * 120.00016 * 273.54280 * 7 6 5 17 17 O 1.21812 * 119.99668 * 357.47513 * 16 7 6 18 18 C 1.46127 * 120.00098 * 177.47875 * 16 7 6 19 19 C 1.41851 * 126.75895 * 7.37895 * 18 16 7 20 20 C 1.34451 * 107.77714 * 180.02562 * 19 18 16 21 21 N 1.36967 * 109.52392 * 0.02562 * 20 19 18 22 22 C 1.36973 * 108.92739 * 359.72930 * 21 20 19 23 23 N 1.33519 * 120.74161 * 179.64212 * 22 21 20 24 24 C 1.31448 * 120.92415 * 0.65093 * 23 22 21 25 25 C 1.50694 * 119.92913 * 179.66982 * 24 23 22 26 26 C 1.40070 * 120.14333 * 359.65456 * 24 23 22 27 27 C 1.35613 * 119.41858 * 0.02562 * 26 24 23 28 28 C 1.50698 * 120.40078 * 180.02562 * 27 26 24 29 29 H 1.08999 * 109.47083 * 299.99445 * 1 2 3 30 30 H 1.08994 * 109.47472 * 59.99550 * 1 2 3 31 31 H 1.08997 * 109.46666 * 180.02562 * 1 2 3 32 32 H 1.08993 * 109.47303 * 59.99942 * 5 3 2 33 33 H 1.08995 * 109.46746 * 299.99570 * 5 3 2 34 34 H 1.09008 * 109.47145 * 64.74656 * 6 5 3 35 35 H 1.09007 * 109.46935 * 304.75256 * 6 5 3 36 36 H 0.97003 * 119.99839 * 180.02562 * 11 10 8 37 37 H 1.07999 * 126.10741 * 359.97438 * 19 18 16 38 38 H 1.08004 * 125.23654 * 180.02562 * 20 19 18 39 39 H 1.08992 * 109.47325 * 269.98007 * 25 24 23 40 40 H 1.09003 * 109.47151 * 29.98404 * 25 24 23 41 41 H 1.08996 * 109.47099 * 149.97940 * 25 24 23 42 42 H 1.08000 * 120.28985 * 179.97438 * 26 24 23 43 43 H 1.08998 * 109.47246 * 269.97818 * 28 27 26 44 44 H 1.09003 * 109.46854 * 29.97873 * 28 27 26 45 45 H 1.09007 * 109.47200 * 149.97732 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2094 0.0005 5 6 3.5663 1.2750 -0.0006 6 6 4.0001 2.7422 0.0002 7 7 5.4584 2.8204 -0.1147 8 6 6.0419 2.9587 -1.3461 9 1 6.8116 2.2689 -1.6596 10 6 5.6397 3.9827 -2.1943 11 7 5.9574 3.9432 -3.4693 12 14 4.6475 5.4160 -1.5230 13 1 5.5645 6.5261 -1.1602 14 1 3.6901 5.8830 -2.5577 15 1 3.8988 4.9783 -0.3175 16 6 6.2260 2.7562 0.9913 17 8 5.7057 2.6796 2.0901 18 6 7.6822 2.7787 0.8724 19 6 8.4341 3.0093 -0.3081 20 6 9.7373 2.9445 0.0160 21 7 9.8637 2.6816 1.3543 22 6 8.6145 2.5803 1.9070 23 7 8.4628 2.3190 3.2076 24 6 9.5064 2.1651 3.9919 25 6 9.3092 1.8781 5.4580 26 6 10.8013 2.2670 3.4677 27 6 10.9668 2.5258 2.1468 28 6 12.3500 2.6394 1.5595 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3632 -1.0277 0.0005 32 1 3.9557 0.7811 -0.8907 33 1 3.9563 0.7808 0.8892 34 1 3.6830 3.2144 0.9301 35 1 3.5409 3.2573 -0.8437 36 1 5.6768 4.6585 -4.0614 37 1 8.0315 3.2016 -1.2917 38 1 10.5582 3.0792 -0.6728 39 1 9.2623 2.8173 6.0090 40 1 8.3790 1.3275 5.5986 41 1 10.1436 1.2817 5.8269 42 1 11.6604 2.1414 4.1101 43 1 12.6844 3.6753 1.6152 44 1 13.0363 2.0053 2.1208 45 1 12.3297 2.3197 0.5175 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001336033788.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:02:45 Heat of formation + Delta-G solvation = -14.149623 kcal Electronic energy + Delta-G solvation = -30420.312985 eV Core-core repulsion = 26212.331015 eV Total energy + Delta-G solvation = -4207.981970 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.13965 -40.12138 -38.66725 -37.28265 -36.23250 -34.95786 -34.61633 -32.33057 -31.43196 -30.78212 -29.69086 -27.94364 -27.52661 -26.85427 -24.90143 -24.39219 -22.32516 -21.51254 -20.75287 -20.35708 -18.80661 -18.13437 -17.44048 -16.78283 -16.43346 -16.31033 -16.20709 -15.76875 -15.46709 -14.76210 -14.55732 -14.06605 -13.89867 -13.75463 -13.63396 -13.42068 -13.28415 -13.08859 -13.06137 -12.81792 -12.49880 -12.39139 -12.26386 -12.13651 -12.04984 -11.81880 -11.66932 -11.52607 -11.19364 -10.96083 -10.60897 -10.54720 -10.20899 -10.15677 -9.98874 -9.72626 -9.52297 -9.08639 -8.55082 -8.24633 -7.56887 -6.99708 -6.44676 -4.21111 0.86630 1.35288 2.59801 2.80158 2.98511 3.10911 3.23123 3.32938 3.43426 3.68349 4.21118 4.22157 4.29363 4.51446 4.58152 4.76752 4.93149 4.98315 5.14798 5.15858 5.21845 5.25164 5.28544 5.30704 5.51963 5.57186 5.59764 5.61095 5.69836 5.71496 5.80082 5.81545 5.99560 6.09929 6.19048 6.24357 6.47655 6.61278 6.69357 6.81066 6.85496 7.02524 7.33361 7.46549 7.58160 8.09309 8.15038 8.24436 8.29046 9.02638 9.41733 9.79454 10.61963 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.011115 B = 0.003720 C = 0.003040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2518.511429 B = 7525.063080 C = 9208.312377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.363 6.363 3 C 0.468 3.532 4 O -0.512 6.512 5 C -0.126 4.126 6 C 0.129 3.871 7 N -0.470 5.470 8 C -0.346 4.346 9 H 0.110 0.890 10 C 0.074 3.926 11 N -0.864 5.864 12 Si 0.860 3.140 13 H -0.276 1.276 14 H -0.283 1.283 15 H -0.245 1.245 16 C 0.563 3.437 17 O -0.579 6.579 18 C -0.174 4.174 19 C -0.072 4.072 20 C -0.089 4.089 21 N -0.378 5.378 22 C 0.244 3.756 23 N -0.421 5.421 24 C 0.147 3.853 25 C -0.096 4.096 26 C -0.215 4.215 27 C 0.128 3.872 28 C -0.115 4.115 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.096 0.904 32 H 0.113 0.887 33 H 0.105 0.895 34 H 0.073 0.927 35 H 0.078 0.922 36 H 0.275 0.725 37 H 0.203 0.797 38 H 0.167 0.833 39 H 0.079 0.921 40 H 0.080 0.920 41 H 0.074 0.926 42 H 0.150 0.850 43 H 0.086 0.914 44 H 0.089 0.911 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.462 -5.618 8.105 12.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.280 6.280 3 C 0.311 3.689 4 O -0.399 6.399 5 C -0.165 4.165 6 C 0.006 3.994 7 N -0.192 5.192 8 C -0.473 4.473 9 H 0.127 0.873 10 C -0.134 4.134 11 N -0.498 5.498 12 Si 0.686 3.314 13 H -0.202 1.202 14 H -0.209 1.209 15 H -0.169 1.169 16 C 0.355 3.645 17 O -0.462 6.462 18 C -0.185 4.185 19 C -0.094 4.094 20 C -0.213 4.213 21 N -0.049 5.049 22 C 0.026 3.974 23 N -0.131 5.131 24 C -0.015 4.015 25 C -0.154 4.154 26 C -0.238 4.238 27 C 0.015 3.985 28 C -0.172 4.172 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.115 0.885 32 H 0.131 0.869 33 H 0.123 0.877 34 H 0.091 0.909 35 H 0.096 0.904 36 H 0.085 0.915 37 H 0.219 0.781 38 H 0.185 0.815 39 H 0.097 0.903 40 H 0.099 0.901 41 H 0.093 0.907 42 H 0.167 0.833 43 H 0.105 0.895 44 H 0.108 0.892 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 7.206 -5.306 8.607 12.416 hybrid contribution 0.228 0.938 -0.342 1.024 sum 7.433 -4.368 8.266 11.944 Atomic orbital electron populations 1.23183 0.77260 1.03133 1.02344 1.86545 1.22818 1.34194 1.84482 1.24088 0.92386 0.80927 0.71478 1.90640 1.67380 1.36335 1.45554 1.21908 0.85870 1.02565 1.06119 1.21480 0.83299 0.91996 1.02652 1.43362 1.03143 1.66566 1.06153 1.19101 1.23672 1.14066 0.90508 0.87340 1.25491 0.95922 0.97309 0.94694 1.69741 1.44482 1.32790 1.02816 0.87164 0.80673 0.83021 0.80562 1.20232 1.20876 1.16906 1.17241 0.85264 0.78236 0.83785 1.90722 1.74790 1.54171 1.26557 1.19229 0.92834 1.15751 0.90724 1.22782 0.89966 0.95375 1.01236 1.21922 0.99796 1.17914 0.81696 1.42602 1.06331 1.46445 1.09501 1.19783 0.83012 1.05262 0.89312 1.67981 1.31993 1.12060 1.01087 1.21624 0.87951 0.95056 0.96918 1.20628 1.03525 1.02568 0.88636 1.21222 0.99392 1.09581 0.93621 1.20746 0.89122 0.97575 0.91034 1.20909 0.90023 1.03961 1.02271 0.92178 0.92094 0.88534 0.86920 0.87731 0.90854 0.90387 0.91476 0.78089 0.81544 0.90266 0.90089 0.90704 0.83266 0.89507 0.89243 0.90170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 10.56 101.05 1.07 1.49 16 2 O -0.36 -5.89 10.57 -39.27 -0.41 -6.30 16 3 C 0.47 8.84 7.96 36.00 0.29 9.12 16 4 O -0.51 -10.85 15.67 -18.76 -0.29 -11.14 16 5 C -0.13 -2.46 6.12 -27.88 -0.17 -2.63 16 6 C 0.13 2.98 2.71 -4.04 -0.01 2.97 16 7 N -0.47 -11.43 1.87 -116.47 -0.22 -11.65 16 8 C -0.35 -8.55 6.69 -15.01 -0.10 -8.65 16 9 H 0.11 2.74 6.06 -52.49 -0.32 2.42 16 10 C 0.07 1.88 5.30 -17.46 -0.09 1.79 16 11 N -0.86 -22.64 13.96 55.49 0.77 -21.86 16 12 Si 0.86 20.70 26.52 -169.99 -4.51 16.19 16 13 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 14 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 15 H -0.25 -6.00 5.13 56.52 0.29 -5.71 16 16 C 0.56 14.19 7.58 -13.09 -0.10 14.09 16 17 O -0.58 -15.72 16.36 5.09 0.08 -15.64 16 18 C -0.17 -4.01 6.08 -104.43 -0.64 -4.65 16 19 C -0.07 -1.46 8.97 -39.54 -0.35 -1.82 16 20 C -0.09 -1.49 10.91 -16.60 -0.18 -1.67 16 21 N -0.38 -6.51 2.93 -58.23 -0.17 -6.68 16 22 C 0.24 5.17 7.68 -155.41 -1.19 3.98 16 23 N -0.42 -8.55 10.17 -8.15 -0.08 -8.63 16 24 C 0.15 2.22 6.83 -82.07 -0.56 1.66 16 25 C -0.10 -1.04 10.19 36.00 0.37 -0.67 16 26 C -0.22 -2.61 9.37 -39.83 -0.37 -2.99 16 27 C 0.13 1.67 6.81 -81.35 -0.55 1.12 16 28 C -0.11 -0.93 9.87 36.00 0.36 -0.58 16 29 H 0.06 0.72 8.13 -51.93 -0.42 0.30 16 30 H 0.06 0.74 8.13 -51.93 -0.42 0.31 16 31 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.11 2.11 8.14 -51.93 -0.42 1.69 16 33 H 0.10 2.01 8.14 -51.93 -0.42 1.59 16 34 H 0.07 1.78 7.38 -51.92 -0.38 1.40 16 35 H 0.08 1.85 4.91 -51.93 -0.26 1.60 16 36 H 0.28 6.87 8.31 -40.82 -0.34 6.54 16 37 H 0.20 4.36 4.85 -52.49 -0.25 4.10 16 38 H 0.17 2.14 7.70 -52.48 -0.40 1.73 16 39 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 41 H 0.07 0.56 8.09 -51.93 -0.42 0.14 16 42 H 0.15 1.17 8.06 -52.49 -0.42 0.75 16 43 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.09 0.51 8.09 -51.93 -0.42 0.09 16 45 H 0.08 0.64 7.43 -51.92 -0.39 0.25 16 LS Contribution 377.01 15.07 5.68 5.68 Total: -1.00 -34.19 377.01 -7.29 -41.48 By element: Atomic # 1 Polarization: 11.89 SS G_CDS: -5.89 Total: 6.00 kcal Atomic # 6 Polarization: 14.81 SS G_CDS: -2.25 Total: 12.56 kcal Atomic # 7 Polarization: -49.13 SS G_CDS: 0.30 Total: -48.83 kcal Atomic # 8 Polarization: -32.45 SS G_CDS: -0.63 Total: -33.08 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -4.51 Total: 16.19 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -34.19 -7.29 -41.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001336033788.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.332 kcal (2) G-P(sol) polarization free energy of solvation -34.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds