Wall clock time and date at job start Wed Apr 1 2020 03:02:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34233 * 116.99902 * 2 1 4 4 O 1.20834 * 119.99574 * 0.02562 * 3 2 1 5 5 C 1.50698 * 120.00170 * 180.02562 * 3 2 1 6 6 C 1.53003 * 109.47241 * 180.02562 * 5 3 2 7 7 N 1.46494 * 109.47196 * 184.74911 * 6 5 3 8 8 C 1.36968 * 120.00141 * 93.54469 * 7 6 5 9 9 H 1.08002 * 120.00245 * 233.30819 * 8 7 6 10 10 C 1.38915 * 119.99828 * 53.03226 * 8 7 6 11 11 N 1.31463 * 120.00053 * 195.73189 * 10 8 7 12 12 Si 1.86800 * 120.00100 * 15.73340 * 10 8 7 13 13 H 1.48494 * 109.47275 * 93.96333 * 12 10 8 14 14 H 1.48501 * 109.47010 * 213.96043 * 12 10 8 15 15 H 1.48496 * 109.47233 * 333.95999 * 12 10 8 16 16 C 1.34783 * 120.00016 * 273.54280 * 7 6 5 17 17 O 1.21812 * 119.99668 * 357.47513 * 16 7 6 18 18 C 1.46127 * 120.00098 * 177.47875 * 16 7 6 19 19 C 1.41851 * 126.75895 * 7.37895 * 18 16 7 20 20 C 1.34451 * 107.77714 * 180.02562 * 19 18 16 21 21 N 1.36967 * 109.52392 * 0.02562 * 20 19 18 22 22 C 1.36973 * 108.92739 * 359.72930 * 21 20 19 23 23 N 1.33519 * 120.74161 * 179.64212 * 22 21 20 24 24 C 1.31448 * 120.92415 * 0.65093 * 23 22 21 25 25 C 1.50694 * 119.92913 * 179.66982 * 24 23 22 26 26 C 1.40070 * 120.14333 * 359.65456 * 24 23 22 27 27 C 1.35613 * 119.41858 * 0.02562 * 26 24 23 28 28 C 1.50698 * 120.40078 * 180.02562 * 27 26 24 29 29 H 1.08999 * 109.47083 * 299.99445 * 1 2 3 30 30 H 1.08994 * 109.47472 * 59.99550 * 1 2 3 31 31 H 1.08997 * 109.46666 * 180.02562 * 1 2 3 32 32 H 1.08993 * 109.47303 * 59.99942 * 5 3 2 33 33 H 1.08995 * 109.46746 * 299.99570 * 5 3 2 34 34 H 1.09008 * 109.47145 * 64.74656 * 6 5 3 35 35 H 1.09007 * 109.46935 * 304.75256 * 6 5 3 36 36 H 0.97003 * 119.99839 * 180.02562 * 11 10 8 37 37 H 1.07999 * 126.10741 * 359.97438 * 19 18 16 38 38 H 1.08004 * 125.23654 * 180.02562 * 20 19 18 39 39 H 1.08992 * 109.47325 * 269.98007 * 25 24 23 40 40 H 1.09003 * 109.47151 * 29.98404 * 25 24 23 41 41 H 1.08996 * 109.47099 * 149.97940 * 25 24 23 42 42 H 1.08000 * 120.28985 * 179.97438 * 26 24 23 43 43 H 1.08998 * 109.47246 * 269.97818 * 28 27 26 44 44 H 1.09003 * 109.46854 * 29.97873 * 28 27 26 45 45 H 1.09007 * 109.47200 * 149.97732 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2094 0.0005 5 6 3.5663 1.2750 -0.0006 6 6 4.0001 2.7422 0.0002 7 7 5.4584 2.8204 -0.1147 8 6 6.0419 2.9587 -1.3461 9 1 6.8116 2.2689 -1.6596 10 6 5.6397 3.9827 -2.1943 11 7 5.9574 3.9432 -3.4693 12 14 4.6475 5.4160 -1.5230 13 1 5.5645 6.5261 -1.1602 14 1 3.6901 5.8830 -2.5577 15 1 3.8988 4.9783 -0.3175 16 6 6.2260 2.7562 0.9913 17 8 5.7057 2.6796 2.0901 18 6 7.6822 2.7787 0.8724 19 6 8.4341 3.0093 -0.3081 20 6 9.7373 2.9445 0.0160 21 7 9.8637 2.6816 1.3543 22 6 8.6145 2.5803 1.9070 23 7 8.4628 2.3190 3.2076 24 6 9.5064 2.1651 3.9919 25 6 9.3092 1.8781 5.4580 26 6 10.8013 2.2670 3.4677 27 6 10.9668 2.5258 2.1468 28 6 12.3500 2.6394 1.5595 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3632 -1.0277 0.0005 32 1 3.9557 0.7811 -0.8907 33 1 3.9563 0.7808 0.8892 34 1 3.6830 3.2144 0.9301 35 1 3.5409 3.2573 -0.8437 36 1 5.6768 4.6585 -4.0614 37 1 8.0315 3.2016 -1.2917 38 1 10.5582 3.0792 -0.6728 39 1 9.2623 2.8173 6.0090 40 1 8.3790 1.3275 5.5986 41 1 10.1436 1.2817 5.8269 42 1 11.6604 2.1414 4.1101 43 1 12.6844 3.6753 1.6152 44 1 13.0363 2.0053 2.1208 45 1 12.3297 2.3197 0.5175 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001336033788.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:02:44 Heat of formation + Delta-G solvation = -35.105876 kcal Electronic energy + Delta-G solvation = -30421.221716 eV Core-core repulsion = 26212.331015 eV Total energy + Delta-G solvation = -4208.890701 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -43.44748 -41.62492 -40.44250 -38.59181 -37.69626 -36.80205 -35.83859 -34.21859 -32.92828 -32.20850 -30.90338 -28.96862 -28.67412 -28.10285 -26.78931 -25.96783 -23.67501 -22.83693 -22.10273 -21.88768 -20.60576 -19.54126 -18.93257 -18.35857 -17.94493 -17.79657 -17.58249 -17.09251 -17.00130 -16.43580 -16.05306 -15.67053 -15.31583 -15.21242 -14.88739 -14.55163 -14.53495 -14.47860 -14.13859 -14.03271 -13.94856 -13.79819 -13.77173 -13.44504 -13.28271 -13.10521 -12.96548 -12.92214 -12.90238 -12.39986 -12.35021 -11.97370 -11.84833 -11.68951 -11.63773 -11.36105 -11.06446 -10.74139 -10.48119 -9.59078 -9.51358 -8.46387 -8.39998 -6.19661 -0.31104 0.11670 1.06744 1.22683 1.30723 1.44389 1.51641 1.56511 1.68899 2.24093 2.36698 2.73359 2.83283 3.05817 3.12747 3.38183 3.67173 3.75888 3.92811 3.94781 4.12749 4.25726 4.29195 4.30349 4.39115 4.44690 4.48173 4.58969 4.64605 4.66641 4.67652 4.72796 4.78262 4.87032 4.90365 4.93464 5.01131 5.17247 5.26417 5.27320 5.45726 5.55216 5.67713 5.87479 6.16427 6.25808 6.29901 6.63415 7.02043 7.05362 7.49062 7.88282 8.64675 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.011115 B = 0.003720 C = 0.003040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2518.511429 B = 7525.063080 C = 9208.312377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.361 6.361 3 C 0.476 3.524 4 O -0.539 6.539 5 C -0.117 4.117 6 C 0.131 3.869 7 N -0.477 5.477 8 C -0.327 4.327 9 H 0.101 0.899 10 C 0.052 3.948 11 N -0.888 5.888 12 Si 0.891 3.109 13 H -0.281 1.281 14 H -0.277 1.277 15 H -0.259 1.259 16 C 0.557 3.443 17 O -0.614 6.614 18 C -0.242 4.242 19 C -0.093 4.093 20 C -0.071 4.071 21 N -0.379 5.379 22 C 0.241 3.759 23 N -0.494 5.494 24 C 0.159 3.841 25 C -0.097 4.097 26 C -0.212 4.212 27 C 0.127 3.873 28 C -0.112 4.112 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.138 0.862 32 H 0.122 0.878 33 H 0.106 0.894 34 H 0.052 0.948 35 H 0.068 0.932 36 H 0.278 0.722 37 H 0.181 0.819 38 H 0.211 0.789 39 H 0.094 0.906 40 H 0.063 0.937 41 H 0.119 0.881 42 H 0.207 0.793 43 H 0.105 0.895 44 H 0.125 0.875 45 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.930 -6.765 9.649 16.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.277 6.277 3 C 0.321 3.679 4 O -0.429 6.429 5 C -0.155 4.155 6 C 0.008 3.992 7 N -0.199 5.199 8 C -0.455 4.455 9 H 0.119 0.881 10 C -0.153 4.153 11 N -0.524 5.524 12 Si 0.717 3.283 13 H -0.207 1.207 14 H -0.202 1.202 15 H -0.183 1.183 16 C 0.350 3.650 17 O -0.500 6.500 18 C -0.253 4.253 19 C -0.114 4.114 20 C -0.195 4.195 21 N -0.049 5.049 22 C 0.021 3.979 23 N -0.206 5.206 24 C -0.002 4.002 25 C -0.154 4.154 26 C -0.233 4.233 27 C 0.016 3.984 28 C -0.168 4.168 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.156 0.844 32 H 0.140 0.860 33 H 0.124 0.876 34 H 0.071 0.929 35 H 0.086 0.914 36 H 0.088 0.912 37 H 0.198 0.802 38 H 0.228 0.772 39 H 0.113 0.887 40 H 0.082 0.918 41 H 0.138 0.862 42 H 0.224 0.776 43 H 0.123 0.877 44 H 0.143 0.857 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 10.690 -6.470 10.129 16.085 hybrid contribution -0.658 1.184 -0.526 1.454 sum 10.032 -5.286 9.603 14.859 Atomic orbital electron populations 1.23606 0.74589 1.05952 1.02565 1.86513 1.25302 1.32196 1.83697 1.23735 0.91894 0.81375 0.70923 1.90628 1.67818 1.37413 1.47030 1.21674 0.87130 1.00149 1.06597 1.21338 0.82801 0.94102 1.00987 1.43437 1.03521 1.66962 1.05975 1.18988 1.22907 1.13413 0.90146 0.88148 1.25707 0.96678 0.98110 0.94853 1.69753 1.45919 1.33533 1.03199 0.86700 0.79931 0.81855 0.79786 1.20702 1.20196 1.18303 1.17720 0.86661 0.77297 0.83281 1.90656 1.75751 1.56027 1.27572 1.19170 0.91960 1.21087 0.93070 1.22407 0.91690 0.97573 0.99741 1.22258 0.99387 1.15723 0.82138 1.42783 1.06537 1.45848 1.09748 1.19739 0.84197 1.04310 0.89698 1.68039 1.34774 1.16439 1.01369 1.22632 0.88532 0.90810 0.98227 1.20847 1.04637 1.03823 0.86127 1.21861 0.99730 1.07787 0.93952 1.21871 0.89984 0.95231 0.91357 1.21149 0.86962 1.05907 1.02806 0.92005 0.91933 0.84415 0.86039 0.87595 0.92933 0.91395 0.91157 0.80229 0.77245 0.88734 0.91765 0.86216 0.77645 0.87691 0.85663 0.89726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.60 10.56 113.37 1.20 1.79 16 2 O -0.36 -11.52 10.57 -51.45 -0.54 -12.07 16 3 C 0.48 18.44 7.96 71.24 0.57 19.01 16 4 O -0.54 -23.55 15.67 21.94 0.34 -23.21 16 5 C -0.12 -4.80 6.12 29.85 0.18 -4.62 16 6 C 0.13 6.44 2.71 86.38 0.23 6.67 16 7 N -0.48 -24.72 1.87 -640.58 -1.20 -25.92 16 8 C -0.33 -17.04 6.69 84.05 0.56 -16.48 16 9 H 0.10 5.38 6.06 -2.91 -0.02 5.36 16 10 C 0.05 2.75 5.30 84.91 0.45 3.20 16 11 N -0.89 -47.81 13.96 21.66 0.30 -47.51 16 12 Si 0.89 44.29 26.52 68.60 1.82 46.11 16 13 H -0.28 -14.01 7.11 99.48 0.71 -13.30 16 14 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16 15 H -0.26 -13.34 5.13 99.48 0.51 -12.83 16 16 C 0.56 30.06 7.58 86.29 0.65 30.71 16 17 O -0.61 -35.79 16.36 -4.71 -0.08 -35.86 16 18 C -0.24 -11.78 6.08 -19.74 -0.12 -11.90 16 19 C -0.09 -3.94 8.97 22.30 0.20 -3.74 16 20 C -0.07 -2.33 10.91 83.02 0.91 -1.42 16 21 N -0.38 -12.50 2.93 -338.14 -0.99 -13.49 16 22 C 0.24 10.42 7.68 133.78 1.03 11.45 16 23 N -0.49 -20.31 10.17 -179.69 -1.83 -22.14 16 24 C 0.16 4.42 6.83 43.06 0.29 4.71 16 25 C -0.10 -1.80 10.19 71.23 0.73 -1.08 16 26 C -0.21 -4.12 9.37 22.11 0.21 -3.91 16 27 C 0.13 2.81 6.81 41.19 0.28 3.09 16 28 C -0.11 -1.16 9.87 71.24 0.70 -0.45 16 29 H 0.06 1.43 8.13 -2.39 -0.02 1.41 16 30 H 0.06 1.45 8.13 -2.39 -0.02 1.43 16 31 H 0.14 2.05 8.14 -2.39 -0.02 2.03 16 32 H 0.12 4.74 8.14 -2.39 -0.02 4.72 16 33 H 0.11 4.32 8.14 -2.39 -0.02 4.30 16 34 H 0.05 2.75 7.38 -2.38 -0.02 2.73 16 35 H 0.07 3.42 4.91 -2.38 -0.01 3.40 16 36 H 0.28 14.22 8.31 -92.71 -0.77 13.45 16 37 H 0.18 8.28 4.85 -2.91 -0.01 8.26 16 38 H 0.21 4.76 7.70 -2.91 -0.02 4.73 16 39 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 40 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 41 H 0.12 1.16 8.09 -2.39 -0.02 1.14 16 42 H 0.21 1.63 8.06 -2.91 -0.02 1.60 16 43 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 44 H 0.12 0.49 8.09 -2.39 -0.02 0.47 16 45 H 0.08 0.89 7.43 -2.38 -0.02 0.87 16 Total: -1.00 -82.88 377.01 6.73 -76.14 By element: Atomic # 1 Polarization: 20.07 SS G_CDS: 0.83 Total: 20.91 kcal Atomic # 6 Polarization: 28.96 SS G_CDS: 8.07 Total: 37.03 kcal Atomic # 7 Polarization: -105.34 SS G_CDS: -3.71 Total: -109.06 kcal Atomic # 8 Polarization: -70.86 SS G_CDS: -0.28 Total: -71.14 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 1.82 Total: 46.11 kcal Total: -82.88 6.73 -76.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001336033788.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.039 kcal (2) G-P(sol) polarization free energy of solvation -82.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds