Wall clock time and date at job start Wed Apr 1 2020 04:24:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50707 * 109.46746 * 2 1 4 4 N 1.29949 * 126.28564 * 90.02946 * 3 2 1 5 5 O 1.21300 * 110.25187 * 179.97438 * 4 3 2 6 6 C 1.33647 * 109.80973 * 359.97438 * 5 4 3 7 7 C 1.50696 * 126.55343 * 180.02562 * 6 5 4 8 8 O 1.42903 * 109.47090 * 269.97447 * 7 6 5 9 9 C 1.42895 * 113.99941 * 179.97438 * 8 7 6 10 10 C 1.50704 * 109.46963 * 179.97438 * 9 8 7 11 11 O 1.21278 * 120.00279 * 0.02562 * 10 9 8 12 12 N 1.34776 * 119.99678 * 180.02562 * 10 9 8 13 13 C 1.46502 * 119.99752 * 180.02562 * 12 10 9 14 14 C 1.50696 * 109.47271 * 179.97438 * 13 12 10 15 15 C 1.38633 * 119.74727 * 269.72494 * 14 13 12 16 16 C 1.37625 * 120.24491 * 179.72164 * 15 14 13 17 17 C 1.40714 * 119.74812 * 0.56736 * 16 15 14 18 18 C 1.41387 * 120.24520 * 179.68425 * 17 16 15 19 19 H 1.07999 * 120.00140 * 155.31208 * 18 17 16 20 20 C 1.39950 * 120.00117 * 335.30946 * 18 17 16 21 21 N 1.30816 * 120.00036 * 342.23560 * 20 18 17 22 22 Si 1.86802 * 119.99954 * 162.23461 * 20 18 17 23 23 H 1.48501 * 109.47069 * 94.66496 * 22 20 18 24 24 H 1.48497 * 109.46969 * 214.66777 * 22 20 18 25 25 H 1.48498 * 109.47144 * 334.66623 * 22 20 18 26 26 C 1.40720 * 119.50812 * 359.70460 * 17 16 15 27 27 C 1.37616 * 119.74733 * 0.02562 * 26 17 16 28 28 N 1.31135 * 106.89566 * 359.76212 * 6 5 4 29 29 H 1.08998 * 109.47019 * 60.00291 * 1 2 3 30 30 H 1.09001 * 109.46515 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.47054 * 299.99715 * 1 2 3 32 32 H 1.09004 * 109.47500 * 240.00443 * 2 1 3 33 33 H 1.08996 * 109.47706 * 119.99992 * 2 1 3 34 34 H 1.09002 * 109.47291 * 29.96948 * 7 6 5 35 35 H 1.09000 * 109.47612 * 149.97147 * 7 6 5 36 36 H 1.09000 * 109.47438 * 299.99678 * 9 8 7 37 37 H 1.09002 * 109.47377 * 59.99801 * 9 8 7 38 38 H 0.97003 * 120.00503 * 359.97438 * 12 10 9 39 39 H 1.09004 * 109.46509 * 299.99317 * 13 12 10 40 40 H 1.08992 * 109.47500 * 59.99473 * 13 12 10 41 41 H 1.07993 * 119.88069 * 359.97438 * 15 14 13 42 42 H 1.08002 * 120.12353 * 180.27951 * 16 15 14 43 43 H 0.96995 * 120.00233 * 180.02562 * 21 20 18 44 44 H 1.08000 * 120.12417 * 179.97438 * 26 17 16 45 45 H 1.07995 * 119.87508 * 179.97438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2891 2.1458 1.0475 5 8 2.6779 3.2449 0.7125 6 6 2.7075 3.3278 -0.6211 7 6 3.1307 4.5220 -1.4369 8 8 1.9944 5.3491 -1.6955 9 6 2.2882 6.5159 -2.4663 10 6 1.0245 7.3094 -2.6780 11 8 -0.0242 6.9148 -2.2141 12 7 1.0600 8.4576 -3.3829 13 6 -0.1683 9.2292 -3.5882 14 6 0.1414 10.4597 -4.4011 15 6 0.4939 11.6371 -3.7598 16 6 0.7844 12.7654 -4.4923 17 6 0.7110 12.7240 -5.8969 18 6 1.0007 13.8788 -6.6595 19 1 1.3344 13.7810 -7.6820 20 6 0.8552 15.1486 -6.0895 21 7 0.1389 15.3007 -5.0054 22 14 1.6837 16.6263 -6.8765 23 1 0.7252 17.3057 -7.7848 24 1 2.1179 17.5725 -5.8176 25 1 2.8666 16.1754 -7.6528 26 6 0.3466 11.5249 -6.5369 27 6 0.0658 10.4074 -5.7845 28 7 2.3033 2.1693 -1.0840 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3632 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 3.8775 5.0929 -0.8851 35 1 3.5568 4.1843 -2.3817 36 1 3.0173 7.1280 -1.9354 37 1 2.6970 6.2199 -3.4324 38 1 1.8988 8.7735 -3.7536 39 1 -0.8975 8.6169 -4.1188 40 1 -0.5769 9.5257 -2.6223 41 1 0.5446 11.6680 -2.6815 42 1 1.0631 13.6804 -3.9908 43 1 0.0377 16.1808 -4.6105 44 1 0.2867 11.4821 -7.6144 45 1 -0.2144 9.4861 -6.2735 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001361893239.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:24:03 Heat of formation + Delta-G solvation = -0.589300 kcal Electronic energy + Delta-G solvation = -27595.051731 eV Core-core repulsion = 23387.657781 eV Total energy + Delta-G solvation = -4207.393950 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -45.94673 -39.72715 -38.19450 -37.56535 -36.71394 -34.77887 -34.22100 -33.49134 -32.06250 -30.68951 -29.45675 -29.18212 -27.54952 -26.16322 -25.47362 -23.61653 -23.52657 -21.54714 -21.12912 -20.46555 -20.16519 -18.55737 -18.05048 -17.43610 -17.27940 -17.04638 -16.63810 -15.79897 -15.48213 -15.25485 -15.11246 -14.78866 -14.52225 -14.17281 -13.83691 -13.76646 -13.43496 -13.33510 -13.04481 -12.62363 -12.54791 -12.45083 -12.13751 -12.08580 -11.90908 -11.78180 -11.67375 -11.63995 -11.34317 -11.24740 -11.13377 -10.67362 -10.59726 -10.37723 -10.27907 -9.81944 -9.67243 -9.53240 -9.25982 -8.75734 -7.62014 -7.50089 -6.90979 -4.50774 0.65437 1.76611 2.24409 2.50484 2.72767 2.90221 2.94172 2.99371 3.03374 3.10326 3.29269 3.62270 3.82021 4.00989 4.38135 4.49049 4.52165 4.67789 4.73249 4.77253 4.78072 4.92632 4.95095 4.97157 5.34094 5.38339 5.49043 5.54742 5.61988 5.74882 5.75837 5.86130 6.19634 6.23794 6.30408 6.40537 6.73818 6.82412 6.93652 7.13440 7.21757 7.46583 7.62618 7.78827 7.81827 7.91104 7.96546 8.14928 8.39003 8.49449 8.74371 8.81946 10.03101 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.032525 B = 0.001420 C = 0.001403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.664245 B =19717.424928 C =19952.185161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.032 4.032 3 C 0.170 3.830 4 N -0.378 5.378 5 O 0.089 5.911 6 C 0.187 3.813 7 C 0.155 3.845 8 O -0.356 6.356 9 C 0.045 3.955 10 C 0.506 3.494 11 O -0.530 6.530 12 N -0.715 5.715 13 C 0.186 3.814 14 C -0.248 4.248 15 C -0.080 4.080 16 C -0.170 4.170 17 C 0.117 3.883 18 C -0.458 4.458 19 H 0.079 0.921 20 C 0.076 3.924 21 N -0.786 5.786 22 Si 0.908 3.092 23 H -0.269 1.269 24 H -0.274 1.274 25 H -0.259 1.259 26 C -0.230 4.230 27 C -0.069 4.069 28 N -0.460 5.460 29 H 0.063 0.937 30 H 0.072 0.928 31 H 0.059 0.941 32 H 0.097 0.903 33 H 0.091 0.909 34 H 0.094 0.906 35 H 0.103 0.897 36 H 0.088 0.912 37 H 0.087 0.913 38 H 0.401 0.599 39 H 0.059 0.941 40 H 0.060 0.940 41 H 0.088 0.912 42 H 0.118 0.882 43 H 0.283 0.717 44 H 0.093 0.907 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.510 -20.076 7.000 22.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.071 4.071 3 C -0.103 4.103 4 N -0.084 5.084 5 O 0.028 5.972 6 C -0.035 4.035 7 C 0.077 3.923 8 O -0.273 6.273 9 C -0.035 4.035 10 C 0.290 3.710 11 O -0.406 6.406 12 N -0.367 5.367 13 C 0.065 3.935 14 C -0.249 4.249 15 C -0.099 4.099 16 C -0.189 4.189 17 C 0.114 3.886 18 C -0.487 4.487 19 H 0.098 0.902 20 C -0.143 4.143 21 N -0.411 5.411 22 Si 0.732 3.268 23 H -0.195 1.195 24 H -0.199 1.199 25 H -0.183 1.183 26 C -0.249 4.249 27 C -0.088 4.088 28 N -0.196 5.196 29 H 0.083 0.917 30 H 0.091 0.909 31 H 0.078 0.922 32 H 0.115 0.885 33 H 0.110 0.890 34 H 0.112 0.888 35 H 0.120 0.880 36 H 0.106 0.894 37 H 0.105 0.895 38 H 0.236 0.764 39 H 0.077 0.923 40 H 0.078 0.922 41 H 0.106 0.894 42 H 0.136 0.864 43 H 0.094 0.906 44 H 0.111 0.889 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 7.239 -20.800 8.082 23.460 hybrid contribution 0.928 1.234 -0.628 1.667 sum 8.168 -19.566 7.455 22.475 Atomic orbital electron populations 1.21753 0.93067 1.02916 1.03020 1.19962 0.97038 0.85365 1.04716 1.25950 1.00399 1.00599 0.83318 1.74651 1.17002 0.92897 1.23899 1.85311 1.60155 1.27121 1.24564 1.28166 0.96942 0.96178 0.82169 1.20594 0.88786 0.85567 0.97386 1.88066 1.30491 1.35015 1.73684 1.22365 0.97024 0.87147 0.96958 1.20095 0.89852 0.81702 0.79314 1.90732 1.31893 1.69014 1.48981 1.46430 1.13336 1.22765 1.54194 1.19963 0.84723 0.90138 0.98677 1.18960 1.18644 0.94127 0.93213 1.20562 0.99072 0.93011 0.97279 1.21307 1.06037 0.97296 0.94255 1.17677 0.86809 0.91845 0.92256 1.19664 1.39295 0.90107 0.99631 0.90250 1.25957 0.92943 1.00982 0.94417 1.69815 1.27680 1.25664 1.17897 0.86295 0.80561 0.80182 0.79737 1.19453 1.19925 1.18324 1.20970 1.11469 0.94731 0.97759 1.20413 0.98753 0.96669 0.92941 1.71890 1.16079 1.02130 1.29461 0.91746 0.90914 0.92230 0.88462 0.89008 0.88788 0.87962 0.89436 0.89486 0.76445 0.92267 0.92187 0.89352 0.86424 0.90630 0.88878 0.89344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 9.89 37.16 0.37 -0.67 16 2 C -0.03 -0.23 6.56 -27.88 -0.18 -0.41 16 3 C 0.17 1.86 7.47 -156.37 -1.17 0.69 16 4 N -0.38 -4.56 12.16 30.90 0.38 -4.18 16 5 O 0.09 1.02 11.31 18.09 0.20 1.22 16 6 C 0.19 1.96 8.14 -13.06 -0.11 1.85 16 7 C 0.16 1.14 6.56 36.00 0.24 1.37 16 8 O -0.36 -4.09 9.86 -55.14 -0.54 -4.64 16 9 C 0.04 0.42 6.42 36.01 0.23 0.65 16 10 C 0.51 7.31 7.91 -10.98 -0.09 7.23 16 11 O -0.53 -10.27 16.50 -14.35 -0.24 -10.51 16 12 N -0.71 -10.09 5.55 -61.47 -0.34 -10.43 16 13 C 0.19 3.20 5.79 -5.19 -0.03 3.17 16 14 C -0.25 -4.88 5.27 -104.33 -0.55 -5.43 16 15 C -0.08 -1.71 9.67 -39.66 -0.38 -2.10 16 16 C -0.17 -4.09 8.70 -38.87 -0.34 -4.43 16 17 C 0.12 2.91 5.57 -106.83 -0.60 2.32 16 18 C -0.46 -11.45 9.05 -37.74 -0.34 -11.79 16 19 H 0.08 1.90 7.91 -52.49 -0.41 1.49 16 20 C 0.08 1.80 5.14 -17.34 -0.09 1.72 16 21 N -0.79 -19.33 10.97 55.55 0.61 -18.72 16 22 Si 0.91 17.60 29.60 -169.99 -5.03 12.57 16 23 H -0.27 -5.18 7.11 56.52 0.40 -4.78 16 24 H -0.27 -5.21 7.11 56.52 0.40 -4.81 16 25 H -0.26 -4.98 7.11 56.52 0.40 -4.58 16 26 C -0.23 -5.23 9.80 -38.87 -0.38 -5.62 16 27 C -0.07 -1.41 9.67 -39.66 -0.38 -1.79 16 28 N -0.46 -5.38 11.55 -9.86 -0.11 -5.49 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.10 0.51 8.14 -51.93 -0.42 0.08 16 36 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 37 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.40 4.80 8.46 -40.82 -0.35 4.45 16 39 H 0.06 1.04 8.08 -51.93 -0.42 0.62 16 40 H 0.06 1.07 8.08 -51.93 -0.42 0.65 16 41 H 0.09 1.73 8.06 -52.49 -0.42 1.30 16 42 H 0.12 2.96 6.18 -52.49 -0.32 2.63 16 43 H 0.28 6.31 8.30 -40.82 -0.34 5.97 16 44 H 0.09 2.01 8.06 -52.49 -0.42 1.59 16 45 H 0.09 1.61 8.06 -52.49 -0.42 1.19 16 LS Contribution 394.86 15.07 5.95 5.95 Total: -1.00 -32.06 394.86 -9.06 -41.12 By element: Atomic # 1 Polarization: 12.50 SS G_CDS: -6.13 Total: 6.36 kcal Atomic # 6 Polarization: -9.45 SS G_CDS: -3.80 Total: -13.25 kcal Atomic # 7 Polarization: -39.36 SS G_CDS: 0.53 Total: -38.83 kcal Atomic # 8 Polarization: -13.34 SS G_CDS: -0.58 Total: -13.92 kcal Atomic # 14 Polarization: 17.60 SS G_CDS: -5.03 Total: 12.57 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -32.06 -9.06 -41.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361893239.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.527 kcal (2) G-P(sol) polarization free energy of solvation -32.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds