Wall clock time and date at job start Wed Apr 1 2020 04:24:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50707 * 109.46746 * 2 1 4 4 N 1.29949 * 126.28564 * 90.02946 * 3 2 1 5 5 O 1.21300 * 110.25187 * 179.97438 * 4 3 2 6 6 C 1.33647 * 109.80973 * 359.97438 * 5 4 3 7 7 C 1.50696 * 126.55343 * 180.02562 * 6 5 4 8 8 O 1.42903 * 109.47090 * 269.97447 * 7 6 5 9 9 C 1.42895 * 113.99941 * 179.97438 * 8 7 6 10 10 C 1.50704 * 109.46963 * 179.97438 * 9 8 7 11 11 O 1.21278 * 120.00279 * 0.02562 * 10 9 8 12 12 N 1.34776 * 119.99678 * 180.02562 * 10 9 8 13 13 C 1.46502 * 119.99752 * 180.02562 * 12 10 9 14 14 C 1.50696 * 109.47271 * 179.97438 * 13 12 10 15 15 C 1.38633 * 119.74727 * 269.72494 * 14 13 12 16 16 C 1.37625 * 120.24491 * 179.72164 * 15 14 13 17 17 C 1.40714 * 119.74812 * 0.56736 * 16 15 14 18 18 C 1.41387 * 120.24520 * 179.68425 * 17 16 15 19 19 H 1.07999 * 120.00140 * 155.31208 * 18 17 16 20 20 C 1.39950 * 120.00117 * 335.30946 * 18 17 16 21 21 N 1.30816 * 120.00036 * 342.23560 * 20 18 17 22 22 Si 1.86802 * 119.99954 * 162.23461 * 20 18 17 23 23 H 1.48501 * 109.47069 * 94.66496 * 22 20 18 24 24 H 1.48497 * 109.46969 * 214.66777 * 22 20 18 25 25 H 1.48498 * 109.47144 * 334.66623 * 22 20 18 26 26 C 1.40720 * 119.50812 * 359.70460 * 17 16 15 27 27 C 1.37616 * 119.74733 * 0.02562 * 26 17 16 28 28 N 1.31135 * 106.89566 * 359.76212 * 6 5 4 29 29 H 1.08998 * 109.47019 * 60.00291 * 1 2 3 30 30 H 1.09001 * 109.46515 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.47054 * 299.99715 * 1 2 3 32 32 H 1.09004 * 109.47500 * 240.00443 * 2 1 3 33 33 H 1.08996 * 109.47706 * 119.99992 * 2 1 3 34 34 H 1.09002 * 109.47291 * 29.96948 * 7 6 5 35 35 H 1.09000 * 109.47612 * 149.97147 * 7 6 5 36 36 H 1.09000 * 109.47438 * 299.99678 * 9 8 7 37 37 H 1.09002 * 109.47377 * 59.99801 * 9 8 7 38 38 H 0.97003 * 120.00503 * 359.97438 * 12 10 9 39 39 H 1.09004 * 109.46509 * 299.99317 * 13 12 10 40 40 H 1.08992 * 109.47500 * 59.99473 * 13 12 10 41 41 H 1.07993 * 119.88069 * 359.97438 * 15 14 13 42 42 H 1.08002 * 120.12353 * 180.27951 * 16 15 14 43 43 H 0.96995 * 120.00233 * 180.02562 * 21 20 18 44 44 H 1.08000 * 120.12417 * 179.97438 * 26 17 16 45 45 H 1.07995 * 119.87508 * 179.97438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2891 2.1458 1.0475 5 8 2.6779 3.2449 0.7125 6 6 2.7075 3.3278 -0.6211 7 6 3.1307 4.5220 -1.4369 8 8 1.9944 5.3491 -1.6955 9 6 2.2882 6.5159 -2.4663 10 6 1.0245 7.3094 -2.6780 11 8 -0.0242 6.9148 -2.2141 12 7 1.0600 8.4576 -3.3829 13 6 -0.1683 9.2292 -3.5882 14 6 0.1414 10.4597 -4.4011 15 6 0.4939 11.6371 -3.7598 16 6 0.7844 12.7654 -4.4923 17 6 0.7110 12.7240 -5.8969 18 6 1.0007 13.8788 -6.6595 19 1 1.3344 13.7810 -7.6820 20 6 0.8552 15.1486 -6.0895 21 7 0.1389 15.3007 -5.0054 22 14 1.6837 16.6263 -6.8765 23 1 0.7252 17.3057 -7.7848 24 1 2.1179 17.5725 -5.8176 25 1 2.8666 16.1754 -7.6528 26 6 0.3466 11.5249 -6.5369 27 6 0.0658 10.4074 -5.7845 28 7 2.3033 2.1693 -1.0840 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3632 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 3.8775 5.0929 -0.8851 35 1 3.5568 4.1843 -2.3817 36 1 3.0173 7.1280 -1.9354 37 1 2.6970 6.2199 -3.4324 38 1 1.8988 8.7735 -3.7536 39 1 -0.8975 8.6169 -4.1188 40 1 -0.5769 9.5257 -2.6223 41 1 0.5446 11.6680 -2.6815 42 1 1.0631 13.6804 -3.9908 43 1 0.0377 16.1808 -4.6105 44 1 0.2867 11.4821 -7.6144 45 1 -0.2144 9.4861 -6.2735 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001361893239.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:24:01 Heat of formation + Delta-G solvation = -22.049910 kcal Electronic energy + Delta-G solvation = -27595.982333 eV Core-core repulsion = 23387.657781 eV Total energy + Delta-G solvation = -4208.324552 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -46.74512 -40.84293 -39.51671 -38.76051 -37.46622 -36.29436 -35.06904 -34.93377 -32.75797 -32.22936 -31.17317 -30.19000 -28.68260 -27.36085 -26.16179 -25.13131 -24.27703 -22.88453 -22.23243 -21.83734 -21.59814 -19.36688 -19.22561 -18.88916 -18.25623 -17.87717 -17.37155 -17.16416 -16.66187 -16.37256 -16.07554 -15.83691 -15.66240 -15.43185 -15.22563 -15.04855 -14.49812 -14.23359 -14.09791 -13.92279 -13.81253 -13.58597 -13.32735 -13.20729 -13.02198 -12.91026 -12.71903 -12.69567 -12.52205 -12.38396 -12.36035 -12.15725 -12.03373 -11.48519 -11.28742 -11.19165 -11.04926 -10.89163 -10.85574 -10.03410 -9.37932 -9.26787 -8.66062 -6.35762 -0.12276 0.83808 1.00155 1.15336 1.40096 1.46085 1.54510 1.58518 1.63773 2.09679 2.20961 2.51356 2.73340 2.92142 3.22364 3.69754 3.77144 3.86674 4.09312 4.13986 4.18581 4.20737 4.26447 4.29436 4.31366 4.39853 4.41256 4.54377 4.67658 4.69934 4.82822 4.83019 4.88326 4.97428 5.06543 5.15975 5.19738 5.36531 5.43603 5.47866 5.70065 5.80703 5.93236 6.10092 6.21583 6.37709 6.66251 6.69416 6.93143 7.00237 7.02031 7.29511 8.30581 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.032525 B = 0.001420 C = 0.001403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.664245 B =19717.424928 C =19952.185161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.033 4.033 3 C 0.165 3.835 4 N -0.403 5.403 5 O 0.077 5.923 6 C 0.186 3.814 7 C 0.153 3.847 8 O -0.396 6.396 9 C 0.052 3.948 10 C 0.502 3.498 11 O -0.586 6.586 12 N -0.706 5.706 13 C 0.194 3.806 14 C -0.227 4.227 15 C -0.081 4.081 16 C -0.191 4.191 17 C 0.086 3.914 18 C -0.497 4.497 19 H 0.077 0.923 20 C 0.037 3.963 21 N -0.822 5.822 22 Si 0.980 3.020 23 H -0.265 1.265 24 H -0.267 1.267 25 H -0.257 1.257 26 C -0.242 4.242 27 C -0.067 4.067 28 N -0.485 5.485 29 H 0.047 0.953 30 H 0.098 0.902 31 H 0.046 0.954 32 H 0.112 0.888 33 H 0.107 0.893 34 H 0.133 0.867 35 H 0.130 0.870 36 H 0.127 0.873 37 H 0.125 0.875 38 H 0.415 0.585 39 H 0.057 0.943 40 H 0.053 0.947 41 H 0.105 0.895 42 H 0.100 0.900 43 H 0.289 0.711 44 H 0.098 0.902 45 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.189 -21.336 6.706 24.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.072 4.072 3 C -0.108 4.108 4 N -0.111 5.111 5 O 0.019 5.981 6 C -0.035 4.035 7 C 0.076 3.924 8 O -0.314 6.314 9 C -0.026 4.026 10 C 0.290 3.710 11 O -0.466 6.466 12 N -0.359 5.359 13 C 0.072 3.928 14 C -0.228 4.228 15 C -0.100 4.100 16 C -0.210 4.210 17 C 0.083 3.917 18 C -0.526 4.526 19 H 0.095 0.905 20 C -0.179 4.179 21 N -0.447 5.447 22 Si 0.801 3.199 23 H -0.189 1.189 24 H -0.191 1.191 25 H -0.180 1.180 26 C -0.262 4.262 27 C -0.086 4.086 28 N -0.220 5.220 29 H 0.067 0.933 30 H 0.117 0.883 31 H 0.065 0.935 32 H 0.130 0.870 33 H 0.126 0.874 34 H 0.150 0.850 35 H 0.148 0.852 36 H 0.145 0.855 37 H 0.142 0.858 38 H 0.252 0.748 39 H 0.076 0.924 40 H 0.071 0.929 41 H 0.123 0.877 42 H 0.118 0.882 43 H 0.100 0.900 44 H 0.116 0.884 45 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 8.960 -22.054 7.774 25.042 hybrid contribution 0.349 1.444 -0.481 1.562 sum 9.309 -20.610 7.293 23.761 Atomic orbital electron populations 1.21732 0.92927 1.04155 1.01540 1.20183 0.97029 0.83748 1.06226 1.26613 0.99541 1.01715 0.82940 1.74633 1.18326 0.93413 1.24767 1.85271 1.60484 1.27062 1.25244 1.28929 0.95679 0.96892 0.81986 1.21052 0.87999 0.84565 0.98779 1.87984 1.33034 1.36059 1.74370 1.22435 0.94171 0.86674 0.99325 1.21031 0.91071 0.81297 0.77644 1.90713 1.34503 1.70281 1.51125 1.46138 1.12777 1.22709 1.54283 1.19688 0.86115 0.89283 0.97748 1.19168 1.15912 0.94482 0.93271 1.20753 0.98408 0.92731 0.98119 1.21252 1.07768 0.97658 0.94347 1.18010 0.87884 0.92887 0.92894 1.19902 1.41378 0.91289 0.99994 0.90456 1.26753 0.92915 1.03386 0.94817 1.69866 1.28853 1.26679 1.19336 0.85224 0.79393 0.76479 0.78847 1.18947 1.19115 1.18031 1.21156 1.11755 0.94934 0.98353 1.20683 0.97691 0.97003 0.93190 1.71909 1.17089 1.02986 1.30042 0.93339 0.88320 0.93502 0.86955 0.87438 0.84969 0.85206 0.85542 0.85780 0.74813 0.92420 0.92891 0.87699 0.88234 0.90047 0.88390 0.86570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.91 9.89 71.98 0.71 -1.20 16 2 C -0.03 -0.45 6.56 29.85 0.20 -0.25 16 3 C 0.16 3.51 7.47 138.47 1.03 4.55 16 4 N -0.40 -9.63 12.16 -60.30 -0.73 -10.37 16 5 O 0.08 1.72 11.31 74.80 0.85 2.57 16 6 C 0.19 3.65 8.14 88.38 0.72 4.37 16 7 C 0.15 1.75 6.56 71.23 0.47 2.22 16 8 O -0.40 -8.06 9.86 -129.94 -1.28 -9.34 16 9 C 0.05 0.77 6.42 71.24 0.46 1.23 16 10 C 0.50 13.36 7.91 87.66 0.69 14.05 16 11 O -0.59 -22.30 16.50 16.01 0.26 -22.04 16 12 N -0.71 -18.11 5.55 -466.79 -2.59 -20.70 16 13 C 0.19 6.35 5.79 85.63 0.50 6.85 16 14 C -0.23 -8.60 5.27 -19.67 -0.10 -8.71 16 15 C -0.08 -3.43 9.67 22.22 0.21 -3.22 16 16 C -0.19 -9.40 8.70 22.73 0.20 -9.20 16 17 C 0.09 4.37 5.57 -21.29 -0.12 4.25 16 18 C -0.50 -25.55 9.05 23.46 0.21 -25.33 16 19 H 0.08 3.83 7.91 -2.91 -0.02 3.80 16 20 C 0.04 1.78 5.14 85.26 0.44 2.22 16 21 N -0.82 -41.52 10.97 21.83 0.24 -41.28 16 22 Si 0.98 36.43 29.60 68.60 2.03 38.46 16 23 H -0.26 -9.55 7.11 99.48 0.71 -8.85 16 24 H -0.27 -9.47 7.11 99.48 0.71 -8.76 16 25 H -0.26 -9.31 7.11 99.48 0.71 -8.60 16 26 C -0.24 -11.04 9.80 22.73 0.22 -10.82 16 27 C -0.07 -2.64 9.67 22.22 0.21 -2.43 16 28 N -0.48 -10.91 11.55 -303.17 -3.50 -14.41 16 29 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.13 0.47 8.14 -2.39 -0.02 0.45 16 35 H 0.13 0.75 8.14 -2.39 -0.02 0.73 16 36 H 0.13 0.91 8.14 -2.39 -0.02 0.89 16 37 H 0.12 0.94 8.14 -2.39 -0.02 0.92 16 38 H 0.42 8.54 8.46 -92.71 -0.78 7.75 16 39 H 0.06 1.93 8.08 -2.38 -0.02 1.91 16 40 H 0.05 1.83 8.08 -2.39 -0.02 1.81 16 41 H 0.10 4.01 8.06 -2.91 -0.02 3.99 16 42 H 0.10 5.20 6.18 -2.91 -0.02 5.18 16 43 H 0.29 13.19 8.30 -92.71 -0.77 12.42 16 44 H 0.10 4.25 8.06 -2.91 -0.02 4.22 16 45 H 0.12 3.92 8.06 -2.91 -0.02 3.89 16 Total: -1.00 -73.92 394.86 1.57 -72.35 By element: Atomic # 1 Polarization: 25.93 SS G_CDS: 0.24 Total: 26.18 kcal Atomic # 6 Polarization: -27.47 SS G_CDS: 6.05 Total: -21.42 kcal Atomic # 7 Polarization: -80.17 SS G_CDS: -6.59 Total: -86.76 kcal Atomic # 8 Polarization: -28.64 SS G_CDS: -0.17 Total: -28.81 kcal Atomic # 14 Polarization: 36.43 SS G_CDS: 2.03 Total: 38.46 kcal Total: -73.92 1.57 -72.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361893239.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.303 kcal (2) G-P(sol) polarization free energy of solvation -73.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds