Wall clock time and date at job start Wed Apr 1 2020 03:16:13
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42895 * 1
3 3 C 1.35995 * 117.00064 * 2 1
4 4 C 1.38558 * 120.07405 * 0.02562 * 3 2 1
5 5 C 1.38247 * 119.99917 * 179.97438 * 4 3 2
6 6 C 1.38245 * 120.14442 * 0.02562 * 5 4 3
7 7 C 1.50705 * 119.92645 * 179.97438 * 6 5 4
8 8 N 1.46500 * 109.46905 * 89.99714 * 7 6 5
9 9 C 1.34779 * 120.00319 * 180.02562 * 8 7 6
10 10 O 1.21612 * 119.99366 * 359.97438 * 9 8 7
11 11 C 1.47423 * 120.00616 * 180.02562 * 9 8 7
12 12 C 1.41288 * 126.41236 * 359.68343 * 11 9 8
13 13 N 1.30451 * 108.02604 * 179.87847 * 12 11 9
14 14 N 1.39937 * 108.89056 * 0.38759 * 13 12 11
15 15 C 1.46501 * 125.74851 * 179.77083 * 14 13 12
16 16 C 1.50698 * 109.47063 * 269.97329 * 15 14 13
17 17 H 1.08000 * 120.00661 * 0.02562 * 16 15 14
18 18 C 1.37880 * 119.99876 * 180.02562 * 16 15 14
19 19 N 1.31516 * 120.00000 * 179.97438 * 18 16 15
20 20 Si 1.86804 * 119.99958 * 0.02562 * 18 16 15
21 21 H 1.48497 * 109.47155 * 90.00055 * 20 18 16
22 22 H 1.48502 * 109.46929 * 209.99623 * 20 18 16
23 23 H 1.48499 * 109.47190 * 329.99739 * 20 18 16
24 24 C 1.34256 * 108.49423 * 359.74817 * 14 13 12
25 25 C 1.50698 * 126.28976 * 179.97438 * 24 14 13
26 26 C 1.38237 * 120.15353 * 359.95521 * 6 5 4
27 27 C 1.38572 * 119.99411 * 0.04545 * 26 6 5
28 28 O 1.35994 * 120.07206 * 180.25617 * 27 26 6
29 29 H 1.08999 * 109.47268 * 300.00538 * 1 2 3
30 30 H 1.09005 * 109.46932 * 60.00506 * 1 2 3
31 31 H 1.09001 * 109.47498 * 180.02562 * 1 2 3
32 32 H 1.07996 * 120.00036 * 359.97438 * 4 3 2
33 33 H 1.08002 * 119.92731 * 179.97438 * 5 4 3
34 34 H 1.09001 * 109.47427 * 209.99874 * 7 6 5
35 35 H 1.09000 * 109.46995 * 330.00144 * 7 6 5
36 36 H 0.97000 * 120.00186 * 0.02562 * 8 7 6
37 37 H 1.08005 * 125.98996 * 0.02562 * 12 11 9
38 38 H 1.08995 * 109.47336 * 29.97925 * 15 14 13
39 39 H 1.09001 * 109.46694 * 149.97429 * 15 14 13
40 40 H 0.96999 * 120.00012 * 179.97438 * 19 18 16
41 41 H 1.09003 * 109.47427 * 269.99935 * 25 24 14
42 42 H 1.09000 * 109.47312 * 30.00109 * 25 24 14
43 43 H 1.08999 * 109.47204 * 150.00676 * 25 24 14
44 44 H 1.07998 * 120.00548 * 180.02562 * 26 6 5
45 45 H 0.96696 * 114.00006 * 269.72656 * 28 27 26
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4289 0.0000 0.0000
3 6 2.0464 1.2117 0.0000
4 6 1.2932 2.3748 0.0005
5 6 1.9225 3.6057 0.0011
6 6 3.3030 3.6797 0.0005
7 6 3.9838 5.0242 0.0005
8 7 4.2049 5.4596 1.3818
9 6 4.8031 6.6419 1.6282
10 8 5.1598 7.3471 0.7038
11 6 5.0262 7.0798 3.0181
12 6 4.6639 6.3750 4.1878
13 7 5.0305 7.0867 5.2178
14 7 5.6279 8.2676 4.7630
15 6 6.1685 9.3343 5.6092
16 6 5.0864 10.3421 5.8998
17 1 4.0950 10.2019 5.4951
18 6 5.3620 11.4432 6.6825
19 7 4.4178 12.3230 6.9357
20 14 7.0770 11.6862 7.3821
21 1 7.8955 12.4721 6.4242
22 1 6.9865 12.4171 8.6716
23 1 7.7122 10.3629 7.6065
24 6 5.6225 8.2580 3.4204
25 6 6.1669 9.3356 2.5185
26 6 4.0604 2.5233 0.0004
27 6 3.4359 1.2862 -0.0002
28 8 4.1795 0.1476 0.0050
29 1 -0.3634 0.5139 0.8899
30 1 -0.3633 0.5138 -0.8901
31 1 -0.3634 -1.0276 0.0005
32 1 0.2147 2.3196 0.0005
33 1 1.3343 4.5115 0.0011
34 1 4.9418 4.9464 -0.5137
35 1 3.3537 5.7505 -0.5129
36 1 3.9207 4.8969 2.1190
37 1 4.1721 5.4141 4.2231
38 1 6.5290 8.9080 6.5453
39 1 6.9931 9.8254 5.0924
40 1 4.6116 13.0974 7.4867
41 1 5.3810 10.0590 2.3014
42 1 6.9972 9.8389 3.0138
43 1 6.5161 8.8883 1.5879
44 1 5.1386 2.5839 0.0004
45 1 4.3947 -0.1855 -0.8769
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001362519013.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:16:13
Heat of formation + Delta-G solvation = -18.822604 kcal
Electronic energy + Delta-G solvation = -28657.833708 eV
Core-core repulsion = 24449.649103 eV
Total energy + Delta-G solvation = -4208.184605 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 345.152 amu
Computer time = 1.05 seconds
Orbital eigenvalues (eV)
-40.92458 -40.76895 -38.97215 -38.18696 -37.14342 -34.48454 -33.86444 -32.20073
-31.39484 -30.94442 -30.35571 -28.35633 -27.69624 -26.83230 -25.48138 -23.07406
-23.02231 -22.11557 -21.54471 -19.87662 -19.17700 -18.78956 -17.96142 -17.22614
-17.12472 -16.98334 -16.30478 -15.81925 -15.30837 -15.12011 -15.10062 -14.81362
-14.57342 -14.39601 -14.24717 -13.96752 -13.79118 -13.26681 -12.84220 -12.77842
-12.63353 -12.54853 -12.40270 -12.26385 -12.14144 -12.05078 -11.64772 -11.59309
-11.47525 -11.21448 -10.94118 -10.83902 -10.40172 -10.23088 -9.79415 -9.51068
-9.25334 -8.98815 -8.84774 -8.64226 -8.48726 -7.95358 -6.32764 -4.37331
0.81210 0.84742 2.13713 2.74215 2.78251 2.99682 3.10309 3.16325
3.18785 3.27256 3.66399 3.84240 3.89158 4.15908 4.36598 4.40080
4.56508 4.70382 4.79236 4.92036 4.92840 5.02368 5.07629 5.13078
5.19374 5.23440 5.45058 5.55818 5.60566 5.70927 5.74834 5.81530
5.88460 6.05471 6.17681 6.25017 6.26882 6.44588 6.46525 6.59183
6.61020 6.77336 7.03063 7.18739 7.36782 7.57010 7.72964 8.20219
8.28894 8.58292 8.70504 9.21161 10.79433
Molecular weight = 345.15amu
Principal moments of inertia in cm(-1)
A = 0.021780 B = 0.001901 C = 0.001866
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1285.288969 B =14727.907727 C =15003.718820
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.024 3.976
2 O -0.309 6.309
3 C 0.107 3.893
4 C -0.197 4.197
5 C -0.066 4.066
6 C -0.126 4.126
7 C 0.170 3.830
8 N -0.731 5.731
9 C 0.604 3.396
10 O -0.555 6.555
11 C -0.329 4.329
12 C 0.062 3.938
13 N -0.293 5.293
14 N -0.314 5.314
15 C 0.224 3.776
16 C -0.545 4.545
17 H 0.082 0.918
18 C 0.081 3.919
19 N -0.883 5.883
20 Si 0.873 3.127
21 H -0.270 1.270
22 H -0.278 1.278
23 H -0.263 1.263
24 C 0.168 3.832
25 C -0.094 4.094
26 C -0.086 4.086
27 C 0.071 3.929
28 O -0.485 6.485
29 H 0.057 0.943
30 H 0.056 0.944
31 H 0.101 0.899
32 H 0.134 0.866
33 H 0.133 0.867
34 H 0.074 0.926
35 H 0.076 0.924
36 H 0.399 0.601
37 H 0.177 0.823
38 H 0.055 0.945
39 H 0.048 0.952
40 H 0.270 0.730
41 H 0.087 0.913
42 H 0.070 0.930
43 H 0.095 0.905
44 H 0.139 0.861
45 H 0.386 0.614
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.385 -22.373 -17.180 28.547
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.071 4.071
2 O -0.222 6.222
3 C 0.061 3.939
4 C -0.216 4.216
5 C -0.084 4.084
6 C -0.126 4.126
7 C 0.046 3.954
8 N -0.384 5.384
9 C 0.395 3.605
10 O -0.435 6.435
11 C -0.345 4.345
12 C -0.126 4.126
13 N -0.112 5.112
14 N -0.090 5.090
15 C 0.106 3.894
16 C -0.583 4.583
17 H 0.100 0.900
18 C -0.124 4.124
19 N -0.519 5.519
20 Si 0.698 3.302
21 H -0.195 1.195
22 H -0.204 1.204
23 H -0.188 1.188
24 C 0.032 3.968
25 C -0.152 4.152
26 C -0.105 4.105
27 C 0.026 3.974
28 O -0.294 6.294
29 H 0.076 0.924
30 H 0.075 0.925
31 H 0.119 0.881
32 H 0.152 0.848
33 H 0.151 0.849
34 H 0.093 0.907
35 H 0.094 0.906
36 H 0.234 0.766
37 H 0.194 0.806
38 H 0.073 0.927
39 H 0.066 0.934
40 H 0.080 0.920
41 H 0.105 0.895
42 H 0.089 0.911
43 H 0.114 0.886
44 H 0.157 0.843
45 H 0.241 0.759
Dipole moment (debyes) X Y Z Total
from point charges -4.029 -21.640 -15.711 27.043
hybrid contribution 0.163 -0.088 -0.404 0.444
sum -3.866 -21.728 -16.114 27.326
Atomic orbital electron populations
1.23118 0.78272 1.04172 1.01516 1.86152 1.21389 1.26242 1.88398
1.19538 0.91815 0.84976 0.97547 1.21182 1.00297 0.91748 1.08340
1.20977 0.93862 0.97411 0.96182 1.19724 0.93524 0.94624 1.04765
1.20027 1.00047 0.91060 0.84222 1.45797 1.63345 1.21494 1.07764
1.17284 0.75864 0.79827 0.87535 1.90699 1.52392 1.54509 1.45874
1.19653 1.21601 1.00038 0.93179 1.23752 0.99736 0.99451 0.89626
1.77153 1.16170 0.94709 1.23198 1.48898 1.41192 1.14892 1.04041
1.20151 0.95439 0.83472 0.90373 1.21086 0.97739 1.05527 1.33906
0.90038 1.24797 0.97351 0.95116 0.95140 1.69864 1.32864 1.11943
1.37262 0.86901 0.84434 0.79241 0.79581 1.19504 1.20370 1.18782
1.21470 0.94788 0.95287 0.85288 1.20594 1.01364 0.95338 0.97893
1.21231 1.00796 0.90203 0.98258 1.17704 0.86112 0.86651 1.06953
1.84921 1.71722 1.39505 1.33299 0.92400 0.92545 0.88073 0.84800
0.84948 0.90735 0.90614 0.76640 0.80602 0.92724 0.93417 0.91983
0.89480 0.91144 0.88639 0.84295 0.75906
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.12 9.81 101.05 0.99 1.11 16
2 O -0.31 -2.72 10.28 -34.23 -0.35 -3.07 16
3 C 0.11 0.97 6.70 -39.12 -0.26 0.71 16
4 C -0.20 -1.51 9.04 -39.46 -0.36 -1.86 16
5 C -0.07 -0.52 9.69 -39.58 -0.38 -0.90 16
6 C -0.13 -1.07 5.25 -104.62 -0.55 -1.62 16
7 C 0.17 1.70 5.79 -5.19 -0.03 1.67 16
8 N -0.73 -8.75 5.54 -62.56 -0.35 -9.09 16
9 C 0.60 9.75 7.81 -12.52 -0.10 9.65 16
10 O -0.56 -10.25 14.84 5.27 0.08 -10.17 16
11 C -0.33 -5.92 6.13 -105.07 -0.64 -6.56 16
12 C 0.06 1.06 11.50 -16.98 -0.20 0.87 16
13 N -0.29 -6.22 12.50 30.86 0.39 -5.83 16
14 N -0.31 -6.94 3.56 -57.78 -0.21 -7.14 16
15 C 0.22 5.24 5.03 -5.19 -0.03 5.21 16
16 C -0.54 -14.93 9.94 -34.44 -0.34 -15.27 16
17 H 0.08 2.53 8.06 -52.49 -0.42 2.10 16
18 C 0.08 2.22 5.47 -17.82 -0.10 2.12 16
19 N -0.88 -25.85 13.96 55.43 0.77 -25.07 16
20 Si 0.87 19.79 27.47 -169.99 -4.67 15.12 16
21 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16
22 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16
23 H -0.26 -5.69 6.54 56.52 0.37 -5.32 16
24 C 0.17 3.36 7.01 -81.61 -0.57 2.79 16
25 C -0.09 -1.65 9.57 36.00 0.34 -1.31 16
26 C -0.09 -0.74 9.63 -39.46 -0.38 -1.12 16
27 C 0.07 0.66 6.72 -39.12 -0.26 0.40 16
28 O -0.49 -4.33 13.29 -34.22 -0.45 -4.78 16
29 H 0.06 0.25 7.66 -51.93 -0.40 -0.15 16
30 H 0.06 0.21 7.66 -51.93 -0.40 -0.19 16
31 H 0.10 0.32 8.14 -51.93 -0.42 -0.10 16
32 H 0.13 0.75 6.30 -52.49 -0.33 0.41 16
33 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16
34 H 0.07 0.75 8.08 -51.93 -0.42 0.33 16
35 H 0.08 0.78 8.08 -51.93 -0.42 0.36 16
36 H 0.40 4.12 7.42 -40.82 -0.30 3.81 16
37 H 0.18 2.21 7.50 -52.48 -0.39 1.82 16
38 H 0.05 1.28 7.20 -51.93 -0.37 0.91 16
39 H 0.05 1.03 6.44 -51.93 -0.33 0.69 16
40 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16
41 H 0.09 1.56 8.14 -51.93 -0.42 1.13 16
42 H 0.07 1.16 7.05 -51.93 -0.37 0.79 16
43 H 0.10 1.59 6.50 -51.93 -0.34 1.25 16
44 H 0.14 1.07 8.06 -52.49 -0.42 0.65 16
45 H 0.39 1.64 9.06 45.56 0.41 2.06 16
LS Contribution 385.03 15.07 5.80 5.80
Total: -1.00 -34.98 385.03 -6.79 -41.78
By element:
Atomic # 1 Polarization: 11.53 SS G_CDS: -4.94 Total: 6.59 kcal
Atomic # 6 Polarization: -1.25 SS G_CDS: -2.86 Total: -4.12 kcal
Atomic # 7 Polarization: -47.75 SS G_CDS: 0.61 Total: -47.14 kcal
Atomic # 8 Polarization: -17.30 SS G_CDS: -0.73 Total: -18.03 kcal
Atomic # 14 Polarization: 19.79 SS G_CDS: -4.67 Total: 15.12 kcal
Total LS contribution 5.80 Total: 5.80 kcal
Total: -34.98 -6.79 -41.78 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001362519013.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 22.955 kcal
(2) G-P(sol) polarization free energy of solvation -34.984 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.029 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.793 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.778 kcal
(6) G-S(sol) free energy of system = (1) + (5) -18.823 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.05 seconds