Wall clock time and date at job start Wed Apr 1 2020 03:17:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35992 * 116.99609 * 2 1 4 4 C 1.38564 * 120.07572 * 0.02562 * 3 2 1 5 5 C 1.38245 * 119.99842 * 179.97438 * 4 3 2 6 6 C 1.50703 * 119.92576 * 179.97438 * 5 4 3 7 7 C 1.50696 * 109.47049 * 89.99919 * 6 5 4 8 8 O 1.21286 * 120.00480 * 359.97438 * 7 6 5 9 9 N 1.34786 * 119.99869 * 180.02562 * 7 6 5 10 10 C 1.39475 * 119.99947 * 180.02562 * 9 7 6 11 11 C 1.36106 * 126.21402 * 359.40627 * 10 9 7 12 12 C 1.39762 * 107.82715 * 179.90618 * 11 10 9 13 13 C 1.50693 * 125.84098 * 180.12546 * 12 11 10 14 14 N 1.30851 * 108.32050 * 0.36647 * 12 11 10 15 15 N 1.35254 * 126.21627 * 179.72384 * 10 9 7 16 16 C 1.46501 * 126.04479 * 359.92219 * 15 10 9 17 17 C 1.50706 * 109.46740 * 90.00563 * 16 15 10 18 18 H 1.07997 * 120.00333 * 359.97438 * 17 16 15 19 19 C 1.37883 * 119.99387 * 179.97438 * 17 16 15 20 20 N 1.31511 * 120.00228 * 0.02562 * 19 17 16 21 21 Si 1.86805 * 119.99520 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.47247 * 59.99970 * 21 19 17 23 23 H 1.48493 * 109.47134 * 180.02562 * 21 19 17 24 24 H 1.48505 * 109.47126 * 300.00173 * 21 19 17 25 25 C 1.38250 * 120.14711 * 0.26778 * 5 4 3 26 26 C 1.38243 * 120.14494 * 359.45767 * 25 5 4 27 27 C 1.38558 * 119.99957 * 0.54274 * 26 25 5 28 28 O 1.35999 * 120.07281 * 179.70694 * 27 26 25 29 29 H 1.09000 * 109.46700 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47303 * 299.99847 * 1 2 3 31 31 H 1.08997 * 109.47186 * 59.99787 * 1 2 3 32 32 H 1.08001 * 120.00331 * 359.97438 * 4 3 2 33 33 H 1.09004 * 109.47228 * 330.00106 * 6 5 4 34 34 H 1.08993 * 109.47092 * 209.99953 * 6 5 4 35 35 H 0.96996 * 119.99695 * 359.72075 * 9 7 6 36 36 H 1.07996 * 126.09059 * 0.02562 * 11 10 9 37 37 H 1.09001 * 109.47655 * 270.26026 * 13 12 11 38 38 H 1.09005 * 109.46993 * 30.25920 * 13 12 11 39 39 H 1.08998 * 109.47545 * 150.25609 * 13 12 11 40 40 H 1.09005 * 109.47343 * 210.00038 * 16 15 10 41 41 H 1.08996 * 109.47725 * 330.00546 * 16 15 10 42 42 H 0.97002 * 119.99597 * 179.97438 * 20 19 17 43 43 H 1.07997 * 119.92455 * 179.70506 * 25 5 4 44 44 H 1.07999 * 119.99878 * 180.24531 * 26 25 5 45 45 H 0.96702 * 113.99938 * 270.02030 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2931 2.3748 0.0005 5 6 1.9223 3.6057 0.0011 6 6 1.1015 4.8696 0.0011 7 6 0.8274 5.2905 1.4219 8 8 1.2559 4.6291 2.3438 9 7 0.1051 6.4016 1.6681 10 6 -0.1482 6.7914 2.9831 11 6 0.2606 6.1421 4.1073 12 6 -0.2011 6.8649 5.2107 13 6 0.0248 6.5073 6.6571 14 7 -0.8676 7.9025 4.7732 15 7 -0.8497 7.8802 3.3728 16 6 -1.4787 8.8629 2.4869 17 6 -2.8895 8.4312 2.1793 18 1 -3.2785 7.5163 2.6011 19 6 -3.6837 9.2045 1.3592 20 7 -3.2099 10.3184 0.8451 21 14 -5.4322 8.6692 0.9774 22 1 -6.2073 8.5727 2.2403 23 1 -6.0699 9.6652 0.0795 24 1 -5.4090 7.3436 0.3083 25 6 3.3028 3.6799 -0.0045 26 6 4.0602 2.5234 0.0007 27 6 3.4359 1.2864 0.0001 28 8 4.1796 0.1478 -0.0008 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 0.2145 2.3197 0.0005 33 1 0.1574 4.6897 -0.5132 34 1 1.6502 5.6592 -0.5123 35 1 -0.2348 6.9324 0.9309 36 1 0.8404 5.2315 4.1407 37 1 -0.7851 5.8653 7.0035 38 1 0.9740 5.9808 6.7572 39 1 0.0491 7.4171 7.2569 40 1 -1.4954 9.8362 2.9773 41 1 -0.9100 8.9329 1.5597 42 1 -3.7685 10.8622 0.2679 43 1 3.7906 4.6434 -0.0089 44 1 5.1385 2.5841 0.0003 45 1 4.3946 -0.1808 -0.8845 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001411663902.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:17:38 Heat of formation + Delta-G solvation = -13.300221 kcal Electronic energy + Delta-G solvation = -29445.321716 eV Core-core repulsion = 25237.376579 eV Total energy + Delta-G solvation = -4207.945137 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.97342 -40.56287 -39.23514 -37.97630 -36.87250 -34.72228 -33.77652 -32.30789 -32.02888 -30.40350 -29.25466 -28.66055 -27.81957 -26.56108 -26.03808 -23.04267 -22.59885 -22.40378 -21.10455 -19.73915 -19.29395 -18.78957 -17.54637 -17.01160 -16.74568 -16.71690 -16.37626 -16.09303 -15.44450 -15.30554 -14.99441 -14.53430 -14.44134 -14.28765 -14.02093 -13.99787 -13.86638 -12.87844 -12.81653 -12.69125 -12.51285 -12.41279 -12.36008 -12.08315 -11.84929 -11.75441 -11.59047 -11.51595 -11.24550 -11.12252 -10.90716 -10.76950 -10.40867 -10.35490 -9.93992 -9.85946 -9.51153 -8.95719 -8.75402 -8.27254 -7.93087 -7.44815 -6.36826 -4.45496 0.95602 1.20320 2.24546 2.79497 3.02023 3.09534 3.14479 3.19774 3.24293 3.43057 3.59664 3.81547 3.99732 4.21090 4.36659 4.59529 4.77877 4.84155 4.90357 4.95703 4.96464 5.07536 5.24771 5.27643 5.30906 5.35987 5.39624 5.61218 5.67143 5.92425 6.03569 6.07385 6.15497 6.18349 6.26327 6.33279 6.41734 6.47653 6.66361 6.81336 6.99253 7.02232 7.50356 7.54247 7.55725 7.61494 7.76605 7.90206 8.29295 8.59535 8.68997 9.22126 10.70228 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.010710 B = 0.002782 C = 0.002483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2613.859309 B =10061.175766 C =11276.103297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.310 6.310 3 C 0.104 3.896 4 C -0.177 4.177 5 C -0.030 4.030 6 C -0.100 4.100 7 C 0.519 3.481 8 O -0.505 6.505 9 N -0.641 5.641 10 C 0.302 3.698 11 C -0.296 4.296 12 C 0.050 3.950 13 C -0.062 4.062 14 N -0.286 5.286 15 N -0.345 5.345 16 C 0.257 3.743 17 C -0.541 4.541 18 H 0.064 0.936 19 C 0.067 3.933 20 N -0.890 5.890 21 Si 0.906 3.094 22 H -0.273 1.273 23 H -0.283 1.283 24 H -0.275 1.275 25 C -0.124 4.124 26 C -0.105 4.105 27 C 0.071 3.929 28 O -0.487 6.487 29 H 0.100 0.900 30 H 0.058 0.942 31 H 0.055 0.945 32 H 0.132 0.868 33 H 0.110 0.890 34 H 0.112 0.888 35 H 0.416 0.584 36 H 0.161 0.839 37 H 0.068 0.932 38 H 0.070 0.930 39 H 0.065 0.935 40 H 0.056 0.944 41 H 0.044 0.956 42 H 0.269 0.731 43 H 0.129 0.871 44 H 0.136 0.864 45 H 0.383 0.617 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.401 -15.531 -6.755 20.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.223 6.223 3 C 0.058 3.942 4 C -0.196 4.196 5 C -0.031 4.031 6 C -0.140 4.140 7 C 0.305 3.695 8 O -0.378 6.378 9 N -0.288 5.288 10 C 0.079 3.921 11 C -0.327 4.327 12 C -0.114 4.114 13 C -0.121 4.121 14 N -0.111 5.111 15 N -0.130 5.130 16 C 0.139 3.861 17 C -0.580 4.580 18 H 0.082 0.918 19 C -0.136 4.136 20 N -0.527 5.527 21 Si 0.733 3.267 22 H -0.199 1.199 23 H -0.209 1.209 24 H -0.200 1.200 25 C -0.142 4.142 26 C -0.123 4.123 27 C 0.026 3.974 28 O -0.296 6.296 29 H 0.118 0.882 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.150 0.850 33 H 0.128 0.872 34 H 0.130 0.870 35 H 0.253 0.747 36 H 0.178 0.822 37 H 0.087 0.913 38 H 0.088 0.912 39 H 0.084 0.916 40 H 0.074 0.926 41 H 0.062 0.938 42 H 0.079 0.921 43 H 0.147 0.853 44 H 0.154 0.846 45 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges 10.985 -14.867 -5.421 19.264 hybrid contribution -1.149 -0.348 -1.530 1.944 sum 9.836 -15.215 -6.951 19.406 Atomic orbital electron populations 1.23112 0.78325 1.04027 1.01662 1.86128 1.21333 1.26162 1.88657 1.19364 0.91697 0.84799 0.98328 1.21000 1.00150 0.91293 1.07174 1.19033 0.93478 0.92856 0.97744 1.20651 1.02297 0.96849 0.94192 1.20423 0.77884 0.79711 0.91482 1.90676 1.49311 1.52343 1.45465 1.42812 1.53106 1.27078 1.05829 1.17929 0.97829 0.91219 0.85103 1.21271 1.16129 1.06635 0.88709 1.22030 0.98482 0.94344 0.96567 1.20018 1.01752 1.01362 0.88975 1.77355 1.23560 1.22376 0.87839 1.49346 1.39695 1.19541 1.04458 1.19608 0.92871 0.86921 0.86674 1.21308 0.96924 1.09254 1.30492 0.91789 1.24934 0.99062 0.94500 0.95152 1.69906 1.37479 1.13245 1.32120 0.86410 0.83380 0.78359 0.78528 1.19858 1.20879 1.20013 1.20805 0.92775 0.98407 1.02256 1.21171 1.00489 0.90726 0.99938 1.17734 0.86105 0.86574 1.06995 1.84911 1.71776 1.39865 1.33026 0.88163 0.92302 0.92597 0.84996 0.87209 0.87020 0.74701 0.82188 0.91340 0.91153 0.91552 0.92574 0.93818 0.92083 0.85296 0.84632 0.76201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.81 101.05 0.99 1.19 16 2 O -0.31 -3.60 10.28 -34.22 -0.35 -3.95 16 3 C 0.10 1.26 6.70 -39.12 -0.26 1.00 16 4 C -0.18 -2.03 8.69 -39.46 -0.34 -2.38 16 5 C -0.03 -0.34 4.37 -104.61 -0.46 -0.80 16 6 C -0.10 -1.02 5.83 -29.04 -0.17 -1.18 16 7 C 0.52 7.74 7.79 -10.98 -0.09 7.66 16 8 O -0.50 -9.12 13.16 5.55 0.07 -9.05 16 9 N -0.64 -10.73 5.42 -11.46 -0.06 -10.79 16 10 C 0.30 6.29 7.66 -153.16 -1.17 5.12 16 11 C -0.30 -6.10 9.58 -39.78 -0.38 -6.48 16 12 C 0.05 1.03 7.21 -82.44 -0.59 0.43 16 13 C -0.06 -0.95 10.44 36.00 0.38 -0.57 16 14 N -0.29 -6.69 12.56 33.65 0.42 -6.26 16 15 N -0.34 -8.04 3.60 -61.57 -0.22 -8.26 16 16 C 0.26 6.34 6.01 -5.19 -0.03 6.30 16 17 C -0.54 -14.34 9.39 -34.44 -0.32 -14.66 16 18 H 0.06 1.77 7.81 -52.49 -0.41 1.36 16 19 C 0.07 1.76 5.46 -17.82 -0.10 1.66 16 20 N -0.89 -23.95 13.29 55.43 0.74 -23.21 16 21 Si 0.91 20.33 29.54 -169.99 -5.02 15.31 16 22 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 23 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 24 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 25 C -0.12 -1.30 9.69 -39.58 -0.38 -1.69 16 26 C -0.10 -1.08 9.98 -39.46 -0.39 -1.48 16 27 C 0.07 0.83 6.72 -39.12 -0.26 0.56 16 28 O -0.49 -5.16 13.29 -34.24 -0.46 -5.62 16 29 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.50 7.66 -51.93 -0.40 0.10 16 31 H 0.06 0.38 7.66 -51.93 -0.40 -0.02 16 32 H 0.13 1.34 6.30 -52.49 -0.33 1.01 16 33 H 0.11 0.91 8.08 -51.93 -0.42 0.49 16 34 H 0.11 0.84 8.08 -51.93 -0.42 0.42 16 35 H 0.42 6.29 7.97 -40.82 -0.33 5.97 16 36 H 0.16 3.25 5.83 -52.49 -0.31 2.95 16 37 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.06 1.50 8.14 -51.93 -0.42 1.08 16 41 H 0.04 1.03 7.50 -51.93 -0.39 0.64 16 42 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 43 H 0.13 1.13 8.06 -52.49 -0.42 0.70 16 44 H 0.14 1.10 8.06 -52.49 -0.42 0.68 16 45 H 0.38 2.14 9.06 45.56 0.41 2.56 16 LS Contribution 388.88 15.07 5.86 5.86 Total: -1.00 -34.69 388.88 -7.69 -42.38 By element: Atomic # 1 Polarization: 13.99 SS G_CDS: -5.08 Total: 8.91 kcal Atomic # 6 Polarization: -1.72 SS G_CDS: -3.59 Total: -5.31 kcal Atomic # 7 Polarization: -49.40 SS G_CDS: 0.88 Total: -48.53 kcal Atomic # 8 Polarization: -17.89 SS G_CDS: -0.73 Total: -18.62 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.02 Total: 15.31 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -34.69 -7.69 -42.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001411663902.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.076 kcal (2) G-P(sol) polarization free energy of solvation -34.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds