Wall clock time and date at job start Wed Apr 1 2020 03:17:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35992 * 116.99609 * 2 1 4 4 C 1.38564 * 120.07572 * 0.02562 * 3 2 1 5 5 C 1.38245 * 119.99842 * 179.97438 * 4 3 2 6 6 C 1.50703 * 119.92576 * 179.97438 * 5 4 3 7 7 C 1.50696 * 109.47049 * 89.99919 * 6 5 4 8 8 O 1.21286 * 120.00480 * 359.97438 * 7 6 5 9 9 N 1.34786 * 119.99869 * 180.02562 * 7 6 5 10 10 C 1.39475 * 119.99947 * 180.02562 * 9 7 6 11 11 C 1.36106 * 126.21402 * 359.40627 * 10 9 7 12 12 C 1.39762 * 107.82715 * 179.90618 * 11 10 9 13 13 C 1.50693 * 125.84098 * 180.12546 * 12 11 10 14 14 N 1.30851 * 108.32050 * 0.36647 * 12 11 10 15 15 N 1.35254 * 126.21627 * 179.72384 * 10 9 7 16 16 C 1.46501 * 126.04479 * 359.92219 * 15 10 9 17 17 C 1.50706 * 109.46740 * 90.00563 * 16 15 10 18 18 H 1.07997 * 120.00333 * 359.97438 * 17 16 15 19 19 C 1.37883 * 119.99387 * 179.97438 * 17 16 15 20 20 N 1.31511 * 120.00228 * 0.02562 * 19 17 16 21 21 Si 1.86805 * 119.99520 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.47247 * 59.99970 * 21 19 17 23 23 H 1.48493 * 109.47134 * 180.02562 * 21 19 17 24 24 H 1.48505 * 109.47126 * 300.00173 * 21 19 17 25 25 C 1.38250 * 120.14711 * 0.26778 * 5 4 3 26 26 C 1.38243 * 120.14494 * 359.45767 * 25 5 4 27 27 C 1.38558 * 119.99957 * 0.54274 * 26 25 5 28 28 O 1.35999 * 120.07281 * 179.70694 * 27 26 25 29 29 H 1.09000 * 109.46700 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47303 * 299.99847 * 1 2 3 31 31 H 1.08997 * 109.47186 * 59.99787 * 1 2 3 32 32 H 1.08001 * 120.00331 * 359.97438 * 4 3 2 33 33 H 1.09004 * 109.47228 * 330.00106 * 6 5 4 34 34 H 1.08993 * 109.47092 * 209.99953 * 6 5 4 35 35 H 0.96996 * 119.99695 * 359.72075 * 9 7 6 36 36 H 1.07996 * 126.09059 * 0.02562 * 11 10 9 37 37 H 1.09001 * 109.47655 * 270.26026 * 13 12 11 38 38 H 1.09005 * 109.46993 * 30.25920 * 13 12 11 39 39 H 1.08998 * 109.47545 * 150.25609 * 13 12 11 40 40 H 1.09005 * 109.47343 * 210.00038 * 16 15 10 41 41 H 1.08996 * 109.47725 * 330.00546 * 16 15 10 42 42 H 0.97002 * 119.99597 * 179.97438 * 20 19 17 43 43 H 1.07997 * 119.92455 * 179.70506 * 25 5 4 44 44 H 1.07999 * 119.99878 * 180.24531 * 26 25 5 45 45 H 0.96702 * 113.99938 * 270.02030 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2931 2.3748 0.0005 5 6 1.9223 3.6057 0.0011 6 6 1.1015 4.8696 0.0011 7 6 0.8274 5.2905 1.4219 8 8 1.2559 4.6291 2.3438 9 7 0.1051 6.4016 1.6681 10 6 -0.1482 6.7914 2.9831 11 6 0.2606 6.1421 4.1073 12 6 -0.2011 6.8649 5.2107 13 6 0.0248 6.5073 6.6571 14 7 -0.8676 7.9025 4.7732 15 7 -0.8497 7.8802 3.3728 16 6 -1.4787 8.8629 2.4869 17 6 -2.8895 8.4312 2.1793 18 1 -3.2785 7.5163 2.6011 19 6 -3.6837 9.2045 1.3592 20 7 -3.2099 10.3184 0.8451 21 14 -5.4322 8.6692 0.9774 22 1 -6.2073 8.5727 2.2403 23 1 -6.0699 9.6652 0.0795 24 1 -5.4090 7.3436 0.3083 25 6 3.3028 3.6799 -0.0045 26 6 4.0602 2.5234 0.0007 27 6 3.4359 1.2864 0.0001 28 8 4.1796 0.1478 -0.0008 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 0.2145 2.3197 0.0005 33 1 0.1574 4.6897 -0.5132 34 1 1.6502 5.6592 -0.5123 35 1 -0.2348 6.9324 0.9309 36 1 0.8404 5.2315 4.1407 37 1 -0.7851 5.8653 7.0035 38 1 0.9740 5.9808 6.7572 39 1 0.0491 7.4171 7.2569 40 1 -1.4954 9.8362 2.9773 41 1 -0.9100 8.9329 1.5597 42 1 -3.7685 10.8622 0.2679 43 1 3.7906 4.6434 -0.0089 44 1 5.1385 2.5841 0.0003 45 1 4.3946 -0.1808 -0.8845 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001411663902.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:17:36 Heat of formation + Delta-G solvation = -36.676918 kcal Electronic energy + Delta-G solvation = -29446.335406 eV Core-core repulsion = 25237.376579 eV Total energy + Delta-G solvation = -4208.958827 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.43069 -41.48246 -40.49771 -38.76617 -37.71138 -36.23537 -35.56456 -33.83936 -33.12822 -31.20250 -30.79771 -30.01853 -28.75701 -27.82101 -27.42832 -24.79142 -23.62968 -23.32976 -22.23724 -21.23149 -20.70381 -19.59265 -18.88849 -18.49690 -18.16979 -17.77495 -17.54330 -16.89671 -16.68826 -16.59331 -16.17498 -16.03148 -15.67181 -15.37540 -15.12475 -14.99716 -14.77233 -14.53504 -14.40406 -14.04183 -13.70320 -13.44099 -13.38574 -13.17909 -13.14569 -13.05073 -12.89710 -12.70205 -12.60936 -12.28576 -12.26651 -12.00381 -11.91795 -11.68985 -11.53957 -11.44529 -10.91128 -10.75948 -9.76992 -9.63059 -9.08635 -9.05459 -8.36230 -6.53754 0.13308 0.39407 0.81788 1.36182 1.38369 1.41031 1.49063 1.65508 2.07085 2.19651 2.30411 2.36102 2.66528 2.94336 3.24567 3.52341 3.72774 3.83767 3.86144 4.10642 4.24525 4.28460 4.32215 4.33993 4.52984 4.57224 4.63341 4.63502 4.70486 4.73057 4.84424 4.87015 4.87989 4.95327 4.95948 5.13233 5.21366 5.24676 5.29724 5.51004 5.52717 5.72401 5.77268 5.95994 6.17811 6.26557 6.31657 6.57550 6.89557 6.98767 7.06003 7.18475 8.69982 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.010710 B = 0.002782 C = 0.002483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2613.859309 B =10061.175766 C =11276.103297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.327 6.327 3 C 0.084 3.916 4 C -0.185 4.185 5 C -0.044 4.044 6 C -0.089 4.089 7 C 0.521 3.479 8 O -0.536 6.536 9 N -0.639 5.639 10 C 0.303 3.697 11 C -0.310 4.310 12 C 0.057 3.943 13 C -0.061 4.061 14 N -0.333 5.333 15 N -0.367 5.367 16 C 0.272 3.728 17 C -0.557 4.557 18 H 0.047 0.953 19 C 0.029 3.971 20 N -0.913 5.913 21 Si 0.967 3.033 22 H -0.280 1.280 23 H -0.273 1.273 24 H -0.263 1.263 25 C -0.128 4.128 26 C -0.108 4.108 27 C 0.060 3.940 28 O -0.501 6.501 29 H 0.120 0.880 30 H 0.051 0.949 31 H 0.069 0.931 32 H 0.140 0.860 33 H 0.134 0.866 34 H 0.145 0.855 35 H 0.423 0.577 36 H 0.165 0.835 37 H 0.084 0.916 38 H 0.094 0.906 39 H 0.075 0.925 40 H 0.025 0.975 41 H 0.052 0.948 42 H 0.275 0.725 43 H 0.147 0.853 44 H 0.155 0.845 45 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.486 -16.505 -7.830 21.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.241 6.241 3 C 0.039 3.961 4 C -0.204 4.204 5 C -0.045 4.045 6 C -0.128 4.128 7 C 0.309 3.691 8 O -0.411 6.411 9 N -0.288 5.288 10 C 0.080 3.920 11 C -0.342 4.342 12 C -0.108 4.108 13 C -0.119 4.119 14 N -0.158 5.158 15 N -0.152 5.152 16 C 0.154 3.846 17 C -0.595 4.595 18 H 0.065 0.935 19 C -0.173 4.173 20 N -0.551 5.551 21 Si 0.791 3.209 22 H -0.206 1.206 23 H -0.197 1.197 24 H -0.187 1.187 25 C -0.146 4.146 26 C -0.127 4.127 27 C 0.014 3.986 28 O -0.313 6.313 29 H 0.138 0.862 30 H 0.070 0.930 31 H 0.088 0.912 32 H 0.158 0.842 33 H 0.152 0.848 34 H 0.162 0.838 35 H 0.261 0.739 36 H 0.182 0.818 37 H 0.102 0.898 38 H 0.112 0.888 39 H 0.094 0.906 40 H 0.043 0.957 41 H 0.069 0.931 42 H 0.084 0.916 43 H 0.165 0.835 44 H 0.173 0.827 45 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges 11.087 -15.856 -6.532 20.421 hybrid contribution -1.085 -0.139 -1.170 1.602 sum 10.002 -15.995 -7.702 20.377 Atomic orbital electron populations 1.23322 0.76873 1.05517 1.01948 1.86096 1.22948 1.26279 1.88787 1.19603 0.92221 0.85179 0.99128 1.21174 1.00670 0.91418 1.07150 1.19200 0.93984 0.92994 0.98273 1.20728 1.03892 0.97318 0.90860 1.21357 0.76236 0.78288 0.93183 1.90654 1.50340 1.53028 1.47069 1.43040 1.53477 1.27816 1.04427 1.18318 0.96458 0.90164 0.87079 1.21448 1.16807 1.06975 0.88944 1.22858 0.96256 0.92833 0.98831 1.20213 1.03558 1.02357 0.85816 1.77302 1.25917 1.24446 0.88151 1.49167 1.41114 1.20375 1.04581 1.19230 0.92616 0.86017 0.86761 1.21376 0.98087 1.08967 1.31065 0.93508 1.25660 1.02623 0.94336 0.94646 1.69979 1.38913 1.13889 1.32307 0.85466 0.78581 0.78701 0.78107 1.20587 1.19720 1.18748 1.21102 0.92743 0.99295 1.01478 1.21427 1.01586 0.90274 0.99373 1.17998 0.86288 0.87248 1.07030 1.84842 1.71616 1.39797 1.34997 0.86168 0.93018 0.91240 0.84247 0.84842 0.83769 0.73857 0.81785 0.89788 0.88775 0.90625 0.95674 0.93070 0.91605 0.83503 0.82695 0.73910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 9.81 113.37 1.11 1.39 16 2 O -0.33 -7.45 10.28 -79.60 -0.82 -8.27 16 3 C 0.08 1.99 6.70 22.57 0.15 2.14 16 4 C -0.19 -4.04 8.69 22.35 0.19 -3.85 16 5 C -0.04 -0.90 4.37 -19.86 -0.09 -0.99 16 6 C -0.09 -1.58 5.83 29.10 0.17 -1.41 16 7 C 0.52 14.81 7.79 87.65 0.68 15.49 16 8 O -0.54 -18.93 13.16 -3.05 -0.04 -18.97 16 9 N -0.64 -20.93 5.42 -308.56 -1.67 -22.60 16 10 C 0.30 12.68 7.66 131.32 1.01 13.68 16 11 C -0.31 -12.74 9.58 22.14 0.21 -12.53 16 12 C 0.06 2.32 7.21 43.07 0.31 2.63 16 13 C -0.06 -1.76 10.44 71.23 0.74 -1.01 16 14 N -0.33 -15.88 12.56 -47.45 -0.60 -16.48 16 15 N -0.37 -17.46 3.60 -348.71 -1.26 -18.72 16 16 C 0.27 13.80 6.01 85.63 0.51 14.31 16 17 C -0.56 -29.91 9.39 25.60 0.24 -29.67 16 18 H 0.05 2.63 7.81 -2.91 -0.02 2.61 16 19 C 0.03 1.52 5.46 84.66 0.46 1.98 16 20 N -0.91 -49.03 13.29 21.45 0.28 -48.75 16 21 Si 0.97 41.15 29.54 68.60 2.03 43.17 16 22 H -0.28 -12.18 7.11 99.48 0.71 -11.48 16 23 H -0.27 -11.04 7.11 99.48 0.71 -10.34 16 24 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 25 C -0.13 -2.44 9.69 22.27 0.22 -2.22 16 26 C -0.11 -2.07 9.98 22.35 0.22 -1.85 16 27 C 0.06 1.33 6.72 22.57 0.15 1.48 16 28 O -0.50 -10.20 13.29 -79.68 -1.06 -11.26 16 29 H 0.12 1.29 8.14 -2.39 -0.02 1.27 16 30 H 0.05 0.86 7.66 -2.39 -0.02 0.84 16 31 H 0.07 0.86 7.66 -2.39 -0.02 0.84 16 32 H 0.14 2.67 6.30 -2.91 -0.02 2.65 16 33 H 0.13 1.79 8.08 -2.39 -0.02 1.77 16 34 H 0.14 1.66 8.08 -2.39 -0.02 1.64 16 35 H 0.42 12.42 7.97 -92.71 -0.74 11.68 16 36 H 0.16 6.61 5.83 -2.91 -0.02 6.59 16 37 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 38 H 0.09 2.25 8.14 -2.38 -0.02 2.23 16 39 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 40 H 0.03 1.40 8.14 -2.38 -0.02 1.39 16 41 H 0.05 2.46 7.50 -2.39 -0.02 2.44 16 42 H 0.27 13.82 8.31 -92.71 -0.77 13.05 16 43 H 0.15 2.17 8.06 -2.91 -0.02 2.15 16 44 H 0.16 2.22 8.06 -2.91 -0.02 2.20 16 45 H 0.40 4.12 9.06 -74.06 -0.67 3.45 16 Total: -1.00 -75.85 388.88 2.82 -73.03 By element: Atomic # 1 Polarization: 29.60 SS G_CDS: -0.35 Total: 29.25 kcal Atomic # 6 Polarization: -6.72 SS G_CDS: 6.30 Total: -0.42 kcal Atomic # 7 Polarization: -103.31 SS G_CDS: -3.24 Total: -106.54 kcal Atomic # 8 Polarization: -36.58 SS G_CDS: -1.92 Total: -38.49 kcal Atomic # 14 Polarization: 41.15 SS G_CDS: 2.03 Total: 43.17 kcal Total: -75.85 2.82 -73.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001411663902.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.356 kcal (2) G-P(sol) polarization free energy of solvation -75.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds