Wall clock time and date at job start Wed Apr 1 2020 03:16:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35990 * 117.00279 * 2 1 4 4 C 1.38566 * 120.07328 * 0.02562 * 3 2 1 5 5 C 1.38240 * 120.00231 * 179.97438 * 4 3 2 6 6 C 1.50697 * 119.92843 * 179.97438 * 5 4 3 7 7 N 1.46498 * 109.47247 * 89.99859 * 6 5 4 8 8 C 1.34777 * 120.00147 * 180.02562 * 7 6 5 9 9 O 1.21603 * 120.00160 * 0.02562 * 8 7 6 10 10 C 1.47429 * 120.00013 * 179.97438 * 8 7 6 11 11 C 1.41293 * 126.41485 * 0.02562 * 10 8 7 12 12 N 1.30448 * 108.02361 * 179.71995 * 11 10 8 13 13 N 1.39944 * 108.89724 * 0.40720 * 12 11 10 14 14 C 1.46491 * 125.75406 * 179.85047 * 13 12 11 15 15 C 1.50702 * 109.46957 * 269.68786 * 14 13 12 16 16 H 1.08002 * 120.00299 * 0.02562 * 15 14 13 17 17 C 1.37884 * 119.99942 * 179.72213 * 15 14 13 18 18 N 1.31514 * 119.99698 * 0.28408 * 17 15 14 19 19 Si 1.86794 * 119.99837 * 180.27476 * 17 15 14 20 20 H 1.48496 * 109.47341 * 0.02562 * 19 17 15 21 21 H 1.48508 * 109.46983 * 120.00379 * 19 17 15 22 22 H 1.48503 * 109.47491 * 240.00192 * 19 17 15 23 23 C 1.34263 * 108.48668 * 359.58371 * 13 12 11 24 24 C 1.50694 * 126.28562 * 180.22136 * 23 13 12 25 25 C 1.38249 * 120.14503 * 0.26865 * 5 4 3 26 26 C 1.38244 * 120.14480 * 359.45293 * 25 5 4 27 27 C 1.38562 * 120.00078 * 0.54991 * 26 25 5 28 28 O 1.35994 * 120.07395 * 179.70486 * 27 26 25 29 29 H 1.09003 * 109.46464 * 299.99567 * 1 2 3 30 30 H 1.09000 * 109.47336 * 59.99192 * 1 2 3 31 31 H 1.08998 * 109.47131 * 179.97438 * 1 2 3 32 32 H 1.08000 * 119.99807 * 359.97438 * 4 3 2 33 33 H 1.08999 * 109.47421 * 329.99782 * 6 5 4 34 34 H 1.08996 * 109.47445 * 209.99676 * 6 5 4 35 35 H 0.97008 * 120.00191 * 359.97438 * 7 6 5 36 36 H 1.07999 * 125.98923 * 359.95357 * 11 10 8 37 37 H 1.09004 * 109.47166 * 149.69052 * 14 13 12 38 38 H 1.08994 * 109.47507 * 29.68759 * 14 13 12 39 39 H 0.97005 * 119.99651 * 179.97438 * 18 17 15 40 40 H 1.08995 * 109.47253 * 90.00157 * 24 23 13 41 41 H 1.09009 * 109.47074 * 210.00037 * 24 23 13 42 42 H 1.09002 * 109.47486 * 330.00194 * 24 23 13 43 43 H 1.08000 * 119.92623 * 179.70945 * 25 5 4 44 44 H 1.08001 * 120.00023 * 180.25366 * 26 25 5 45 45 H 0.96694 * 113.99925 * 270.01938 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2117 0.0000 4 6 1.2933 2.3748 0.0005 5 6 1.9225 3.6057 0.0011 6 6 1.1018 4.8696 0.0011 7 7 0.8353 5.2788 1.3823 8 6 0.1131 6.3898 1.6285 9 8 -0.3177 7.0523 0.7043 10 6 -0.1556 6.8013 3.0185 11 6 0.2759 6.1366 4.1883 12 7 -0.1561 6.8107 5.2182 13 7 -0.8819 7.9174 4.7634 14 6 -1.5335 8.9201 5.6095 15 6 -2.9485 8.4901 5.8991 16 1 -3.3247 7.5624 5.4937 17 6 -3.7610 9.2780 6.6867 18 7 -3.3028 10.4074 7.1806 19 14 -5.5125 8.7412 7.0518 20 1 -5.7818 7.4426 6.3837 21 1 -5.6878 8.5884 8.5186 22 1 -6.4603 9.7655 6.5441 23 6 -0.8753 7.9084 3.4208 24 6 -1.5333 8.9205 2.5189 25 6 3.3030 3.6798 -0.0045 26 6 4.0603 2.5232 0.0007 27 6 3.4360 1.2862 0.0001 28 8 4.1796 0.1476 -0.0008 29 1 -0.3632 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 0.2147 2.3196 0.0005 33 1 0.1577 4.6898 -0.5132 34 1 1.6505 5.6591 -0.5123 35 1 1.1780 4.7497 2.1196 36 1 0.8638 5.2314 4.2237 37 1 -1.5439 9.8800 5.0931 38 1 -0.9845 9.0174 6.5461 39 1 -3.8746 10.9619 7.7344 40 1 -0.8306 9.7249 2.3019 41 1 -1.8320 8.4380 1.5882 42 1 -2.4134 9.3308 3.0142 43 1 3.7909 4.6433 -0.0088 44 1 5.1386 2.5839 0.0005 45 1 4.3946 -0.1810 -0.8844 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001417674131.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:16:07 Heat of formation + Delta-G solvation = -25.312753 kcal Electronic energy + Delta-G solvation = -28805.348533 eV Core-core repulsion = 24596.882494 eV Total energy + Delta-G solvation = -4208.466039 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.90042 -40.71809 -38.91524 -38.16233 -37.19974 -34.46988 -33.87305 -32.11673 -31.31257 -30.82835 -30.42169 -28.10770 -27.39106 -26.70135 -25.51964 -23.40829 -22.75524 -22.19389 -21.65430 -19.88482 -19.16569 -18.92818 -17.80675 -17.10863 -16.83915 -16.72112 -16.33939 -15.75285 -15.51601 -15.20356 -15.07299 -14.60604 -14.56291 -14.44141 -14.09490 -14.04715 -13.77080 -13.15132 -12.91267 -12.63401 -12.56344 -12.51073 -12.40484 -12.11766 -12.04320 -11.79715 -11.60688 -11.48490 -11.45092 -11.11124 -10.94742 -10.92778 -10.38536 -10.19357 -9.92468 -9.52758 -9.16376 -9.01172 -8.72934 -8.58924 -8.49363 -7.92403 -6.34999 -4.42840 0.70158 0.97570 2.17584 2.78875 2.83430 3.02358 3.15895 3.23831 3.26374 3.34970 3.69353 3.83991 3.90305 4.23214 4.27646 4.45114 4.66959 4.79664 4.81660 4.90317 4.98713 5.09132 5.13345 5.19443 5.24753 5.31307 5.38970 5.51542 5.66386 5.73522 5.77643 5.87833 5.95279 6.09110 6.17215 6.26968 6.42525 6.55924 6.60344 6.78131 6.81166 6.89189 7.15556 7.36033 7.55229 7.70841 7.76005 7.78593 8.37123 8.57725 8.63587 9.24221 10.73198 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.016979 B = 0.002046 C = 0.001966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1648.699622 B =13679.620287 C =14241.769506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.309 6.309 3 C 0.101 3.899 4 C -0.176 4.176 5 C -0.072 4.072 6 C 0.165 3.835 7 N -0.732 5.732 8 C 0.605 3.395 9 O -0.556 6.556 10 C -0.333 4.333 11 C 0.058 3.942 12 N -0.295 5.295 13 N -0.314 5.314 14 C 0.250 3.750 15 C -0.540 4.540 16 H 0.066 0.934 17 C 0.067 3.933 18 N -0.889 5.889 19 Si 0.908 3.092 20 H -0.271 1.271 21 H -0.280 1.280 22 H -0.280 1.280 23 C 0.166 3.834 24 C -0.098 4.098 25 C -0.121 4.121 26 C -0.108 4.108 27 C 0.078 3.922 28 O -0.487 6.487 29 H 0.059 0.941 30 H 0.056 0.944 31 H 0.101 0.899 32 H 0.136 0.864 33 H 0.074 0.926 34 H 0.077 0.923 35 H 0.400 0.600 36 H 0.175 0.825 37 H 0.057 0.943 38 H 0.057 0.943 39 H 0.269 0.731 40 H 0.076 0.924 41 H 0.095 0.905 42 H 0.082 0.918 43 H 0.133 0.867 44 H 0.138 0.862 45 H 0.386 0.614 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.910 -16.413 -17.454 26.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.222 6.222 3 C 0.055 3.945 4 C -0.195 4.195 5 C -0.072 4.072 6 C 0.042 3.958 7 N -0.384 5.384 8 C 0.395 3.605 9 O -0.435 6.435 10 C -0.348 4.348 11 C -0.129 4.129 12 N -0.115 5.115 13 N -0.091 5.091 14 C 0.133 3.867 15 C -0.578 4.578 16 H 0.084 0.916 17 C -0.137 4.137 18 N -0.526 5.526 19 Si 0.735 3.265 20 H -0.195 1.195 21 H -0.206 1.206 22 H -0.205 1.205 23 C 0.029 3.971 24 C -0.156 4.156 25 C -0.140 4.140 26 C -0.126 4.126 27 C 0.032 3.968 28 O -0.296 6.296 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.120 0.880 32 H 0.153 0.847 33 H 0.092 0.908 34 H 0.096 0.904 35 H 0.234 0.766 36 H 0.192 0.808 37 H 0.075 0.925 38 H 0.075 0.925 39 H 0.078 0.922 40 H 0.095 0.905 41 H 0.114 0.886 42 H 0.101 0.899 43 H 0.151 0.849 44 H 0.156 0.844 45 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges 11.478 -15.733 -15.967 25.183 hybrid contribution -0.900 -0.609 -0.580 1.232 sum 10.578 -16.342 -16.547 25.549 Atomic orbital electron populations 1.23136 0.78111 1.04224 1.01692 1.86146 1.21482 1.26042 1.88524 1.19445 0.91746 0.84968 0.98323 1.21141 1.00439 0.91185 1.06735 1.19756 0.93924 0.94052 0.99498 1.20079 0.98696 0.92576 0.84478 1.45760 1.56924 1.28186 1.07554 1.17315 0.76368 0.79131 0.87645 1.90694 1.52599 1.54292 1.45920 1.19652 1.18707 1.03476 0.93015 1.23722 0.99953 0.99548 0.89704 1.77144 1.12712 0.98409 1.23270 1.49379 1.35958 1.19516 1.04212 1.19858 0.92735 0.83845 0.90235 1.21295 0.95574 1.07942 1.33011 0.91606 1.24934 0.99373 0.94586 0.94823 1.69925 1.37107 1.12226 1.33382 0.86269 0.83068 0.78868 0.78317 1.19534 1.20562 1.20533 1.21478 0.94407 0.95690 0.85550 1.20614 1.00444 0.96200 0.98318 1.20949 0.92838 0.98545 1.01636 1.21266 1.00733 0.90706 0.99927 1.17803 0.86160 0.86698 1.06122 1.84898 1.71716 1.39759 1.33245 0.92260 0.92500 0.88029 0.84651 0.90767 0.90434 0.76622 0.80836 0.92538 0.92485 0.92153 0.90501 0.88624 0.89902 0.84917 0.84444 0.75863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.81 101.05 0.99 1.14 16 2 O -0.31 -2.95 10.28 -34.21 -0.35 -3.30 16 3 C 0.10 0.97 6.70 -39.12 -0.26 0.71 16 4 C -0.18 -1.54 8.69 -39.46 -0.34 -1.88 16 5 C -0.07 -0.62 5.25 -104.62 -0.55 -1.17 16 6 C 0.17 1.66 5.80 -5.20 -0.03 1.63 16 7 N -0.73 -8.75 5.54 -62.57 -0.35 -9.10 16 8 C 0.60 9.78 7.81 -12.52 -0.10 9.68 16 9 O -0.56 -10.28 14.84 5.27 0.08 -10.21 16 10 C -0.33 -6.03 6.13 -105.07 -0.64 -6.67 16 11 C 0.06 1.01 11.50 -16.98 -0.20 0.81 16 12 N -0.30 -6.36 12.50 30.86 0.39 -5.98 16 13 N -0.31 -7.08 3.56 -57.78 -0.21 -7.28 16 14 C 0.25 6.22 5.78 -5.20 -0.03 6.19 16 15 C -0.54 -14.49 9.39 -34.44 -0.32 -14.81 16 16 H 0.07 1.82 7.81 -52.49 -0.41 1.41 16 17 C 0.07 1.78 5.46 -17.82 -0.10 1.69 16 18 N -0.89 -24.50 13.29 55.43 0.74 -23.76 16 19 Si 0.91 20.74 29.54 -169.99 -5.02 15.72 16 20 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 21 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 22 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 23 C 0.17 3.36 7.01 -81.60 -0.57 2.79 16 24 C -0.10 -1.75 9.34 36.00 0.34 -1.41 16 25 C -0.12 -0.96 9.69 -39.57 -0.38 -1.34 16 26 C -0.11 -0.85 9.98 -39.46 -0.39 -1.24 16 27 C 0.08 0.71 6.72 -39.12 -0.26 0.45 16 28 O -0.49 -4.22 13.29 -34.22 -0.45 -4.68 16 29 H 0.06 0.36 7.66 -51.93 -0.40 -0.04 16 30 H 0.06 0.29 7.66 -51.93 -0.40 -0.10 16 31 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.14 1.04 6.30 -52.49 -0.33 0.71 16 33 H 0.07 0.77 8.08 -51.93 -0.42 0.35 16 34 H 0.08 0.78 8.08 -51.93 -0.42 0.36 16 35 H 0.40 4.13 7.42 -40.82 -0.30 3.83 16 36 H 0.17 2.21 7.50 -52.49 -0.39 1.82 16 37 H 0.06 1.39 7.62 -51.93 -0.40 0.99 16 38 H 0.06 1.51 8.14 -51.93 -0.42 1.08 16 39 H 0.27 6.96 8.31 -40.82 -0.34 6.63 16 40 H 0.08 1.25 8.14 -51.93 -0.42 0.82 16 41 H 0.10 1.68 6.50 -51.92 -0.34 1.34 16 42 H 0.08 1.54 7.70 -51.93 -0.40 1.14 16 43 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 44 H 0.14 0.82 8.06 -52.49 -0.42 0.40 16 45 H 0.39 1.53 9.06 45.56 0.41 1.95 16 LS Contribution 389.47 15.07 5.87 5.87 Total: -1.00 -33.36 389.47 -7.21 -40.57 By element: Atomic # 1 Polarization: 10.63 SS G_CDS: -5.04 Total: 5.59 kcal Atomic # 6 Polarization: -0.59 SS G_CDS: -2.86 Total: -3.45 kcal Atomic # 7 Polarization: -46.69 SS G_CDS: 0.57 Total: -46.12 kcal Atomic # 8 Polarization: -17.45 SS G_CDS: -0.73 Total: -18.18 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -33.36 -7.21 -40.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001417674131.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.258 kcal (2) G-P(sol) polarization free energy of solvation -33.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds